mRNA_M-pyrifera_M_contig99861.22960.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99861.22960.1
Unique NamemRNA_M-pyrifera_M_contig99861.22960.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A661NVI3_9DELT (Peptidase S1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NVI3_9DELT)

HSP 1 Score: 75.1 bits (183), Expect = 2.260e-13
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    1 PCTDDFCDTGIGCFSVP-ASGSSCTTSSICMLRDGFCVVGECVGE-PINCDDLNPCTEDSCSPSLGCQHRQL 210
            PCT+D C+   GC   P A G+SC    +C   +  C  G CV + P +CDD NPCTEDSC P  GCQHRQL
Sbjct:  343 PCTEDVCNAASGCIFRPVADGTSCDDGDLCNGEE-ICQQGSCVMQAPADCDDGNPCTEDSCEPGSGCQHRQL 413          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A7V6B7C3_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V6B7C3_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 7.000e-13
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 PCTDDFCDTGIGCFSVPASGSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQH 201
            PCT D CD   GC +VP  G  C+ ++ C   D  C  G CVG+P+NCDD N CT D+C  + GC H
Sbjct:  156 PCTQDSCDPQHGCINVPLDGVLCSANNACTQND-VCKAGVCVGQPVNCDDNNICTTDTCDRTKGCLH 221          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A2E4FCX5_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E4FCX5_9DELT)

HSP 1 Score: 68.2 bits (165), Expect = 6.200e-11
Identity = 33/68 (48.53%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 PCTDDFCDTGIGCFSVPASGSSCTTSSICMLRDGFCVVGECV-GEPINCDDLNPCTEDSCSPSLGCQH 201
            PCT+D C    GC  +P +G SC+   +C L D  CV G C  G   +CDD NPCT+DSC P   CQH
Sbjct:  402 PCTEDLCLPDEGCSHLPTTGPSCSDGDLCTLGDS-CVAGVCSSGVDQDCDDSNPCTDDSCGPDGLCQH 468          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A3M1D3V6_9DELT (Peptidase S1 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1D3V6_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 7.330e-10
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 PCTDDFCDTGIGCFSVPAS-GSSCTTSSICMLRDGFCVVGECVG-EPINCDDLNPCTEDSCSPSLGCQHRQL 210
            PCT D C+   GCF      G+SC+       ++  C  G+CV  EP++CDD N CTED+C P++GC H +L
Sbjct:  411 PCTSDECNPATGCFHRSVEDGTSCSXXXXXXGQE-VCQAGQCVSSEPLDCDDANACTEDTCDPAVGCSHTEL 481          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A3A8JYV2_9DELT (Uncharacterized protein n=2 Tax=Corallococcus TaxID=83461 RepID=A0A3A8JYV2_9DELT)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-9
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   37 CFSVP-ASGSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQHRQLDC-EPQAP 231
            C   P   G++C  SS C  +DG C  G CVG+P  CDD NPCT DSCSP+ GC    + C EP+ P
Sbjct:  149 CIETPQGDGAACIPSSRCQ-QDGHCQAGVCVGQPRTCDDDNPCTVDSCSPTQGCVRADVVCPEPRDP 214          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A7Y5GYB1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y5GYB1_9DELT)

HSP 1 Score: 63.5 bits (153), Expect = 2.760e-9
Identity = 33/67 (49.25%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    4 CTDDFCDTGIGCFSVPASGSSCTTSSICMLRDGFCVVGECVG-EPINCDDLNPCTEDSCSPSLGCQH 201
            CT D C   +GC      G+ C  +S+C   D  C  G CVG  PI+CDD +PCT DSC P LGCQH
Sbjct: 1263 CTLDKCVANVGCQYTSLPGT-CNDNSVCTQVDA-CSAGVCVGASPIDCDDSDPCTTDSCDPILGCQH 1327          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: UPI001A8FF724 (hypothetical protein n=1 Tax=Corallococcus macrosporus TaxID=35 RepID=UPI001A8FF724)

HSP 1 Score: 62.8 bits (151), Expect = 4.890e-9
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    4 CTDDFCDTGIG-CFSVP-ASGSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQHRQLDC 216
            C D   D   G C   P A G+SC   S C   +G C  G CVG+P  CDD NPCT DSCSP+ GC   ++ C
Sbjct:  138 CRDSRFDLASGQCIESPQADGASCIPGSRCQ-ENGRCQAGVCVGQPRTCDDDNPCTVDSCSPTQGCVTERVTC 209          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: UPI001CBE2BBD (hypothetical protein n=1 Tax=Corallococcus sp. EGB TaxID=1521117 RepID=UPI001CBE2BBD)

HSP 1 Score: 62.8 bits (151), Expect = 4.920e-9
Identity = 34/73 (46.58%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    4 CTDDFCDTGIG-CFSVP-ASGSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQHRQLDC 216
            C D   D   G C   P A G+SC  SS C   +G C  G C+G+P  CDD NPCT DSCSP+ GC    + C
Sbjct:  138 CHDSRFDVDSGQCIETPQADGASCIPSSRCQ-ENGRCQAGACLGQPRTCDDDNPCTVDSCSPTQGCVTEAVAC 209          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A3A8PEW0_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Corallococcus llansteffanensis TaxID=2316731 RepID=A0A3A8PEW0_9DELT)

HSP 1 Score: 62.4 bits (150), Expect = 6.090e-9
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   58 GSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQHRQLDC 216
            G+SC  SS C  +DG C  G CVG+P  CDD NPCT DSCSP+ GC    + C
Sbjct:  157 GASCIPSSRCQ-QDGRCQAGVCVGQPRTCDDDNPCTVDSCSPTQGCVKADVVC 208          
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Match: A0A554GCQ8_9DELT (Uncharacterized protein n=2 Tax=Corallococcus TaxID=83461 RepID=A0A554GCQ8_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 9.080e-9
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   22 DTGIGCFSVPASGSSCTTSSICMLRDGFCVVGECVGEPINCDDLNPCTEDSCSPSLGCQHRQLDCEP 222
            ++G+   S  A G+SC  SS C   +G C  G CVG P  C+D NPCT DSCSP+ GC   ++ C P
Sbjct:  145 ESGLCIESPQADGASCIPSSRCQ-ENGTCQAGVCVGRPRTCNDDNPCTVDSCSPTQGCVTEKVVCPP 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99861.22960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A661NVI3_9DELT2.260e-1351.39Peptidase S1 domain-containing protein n=1 Tax=Del... [more]
A0A7V6B7C3_9DELT7.000e-1347.76Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2E4FCX5_9DELT6.200e-1148.53Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A3M1D3V6_9DELT7.330e-1043.06Peptidase S1 domain-containing protein n=1 Tax=Del... [more]
A0A3A8JYV2_9DELT1.930e-949.25Uncharacterized protein n=2 Tax=Corallococcus TaxI... [more]
A0A7Y5GYB1_9DELT2.760e-949.25Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
UPI001A8FF7244.890e-946.58hypothetical protein n=1 Tax=Corallococcus macrosp... [more]
UPI001CBE2BBD4.920e-946.58hypothetical protein n=1 Tax=Corallococcus sp. EGB... [more]
A0A3A8PEW0_9DELT6.090e-954.72Uncharacterized protein (Fragment) n=1 Tax=Corallo... [more]
A0A554GCQ8_9DELT9.080e-946.27Uncharacterized protein n=2 Tax=Corallococcus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99861contigM-pyrifera_M_contig99861:2..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.754141-CDS-M-pyrifera_M_contig99861:1..3581622816915.754141-CDS-M-pyrifera_M_contig99861:1..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99861 2..358 +
1692278253.3517554-CDS-M-pyrifera_M_contig99861:1..3581692278253.3517554-CDS-M-pyrifera_M_contig99861:1..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99861 2..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99861.22960.1prot_M-pyrifera_M_contig99861.22960.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99861 2..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99861.22960.1

>prot_M-pyrifera_M_contig99861.22960.1 ID=prot_M-pyrifera_M_contig99861.22960.1|Name=mRNA_M-pyrifera_M_contig99861.22960.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
PCTDDFCDTGIGCFSVPASGSSCTTSSICMLRDGFCVVGECVGEPINCDD
LNPCTEDSCSPSLGCQHRQLDCEPQAPHGPTDQPRPGSSPSVTPTVTQSN
LLNLLSPYIDPLGPIPYNP
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mRNA from alignment at M-pyrifera_M_contig99861:2..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99861.22960.1 ID=mRNA_M-pyrifera_M_contig99861.22960.1|Name=mRNA_M-pyrifera_M_contig99861.22960.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig99861:2..358+ (Macrocystis pyrifera P11B4 male)
CCCTGCACCGACGACTTTTGCGACACAGGCATCGGATGCTTCAGCGTGCC TGCCTCGGGCAGCTCCTGTACTACCAGCAGCATTTGCATGCTGCGAGACG GCTTCTGTGTTGTGGGCGAGTGCGTTGGCGAGCCCATCAATTGCGACGAT CTCAACCCTTGCACTGAAGACTCGTGCAGCCCGAGTCTAGGCTGCCAGCA CAGGCAGTTGGACTGTGAGCCACAGGCGCCTCATGGCCCTACCGATCAGC CCCGGCCTGGCTCCTCGCCTTCTGTCACTCCCACAGTAACCCAGAGCAAC CTCTTGAACTTGCTCTCGCCCTACATCGACCCACTTGGCCCCATTCCTTA CAACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99861:2..358+

>mRNA_M-pyrifera_M_contig99861.22960.1 ID=mRNA_M-pyrifera_M_contig99861.22960.1|Name=mRNA_M-pyrifera_M_contig99861.22960.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig99861:2..358+ (Macrocystis pyrifera P11B4 male)
CCCTGCACCGACGACTTTTGCGACACAGGCATCGGATGCTTCAGCGTGCC
TGCCTCGGGCAGCTCCTGTACTACCAGCAGCATTTGCATGCTGCGAGACG
GCTTCTGTGTTGTGGGCGAGTGCGTTGGCGAGCCCATCAATTGCGACGAT
CTCAACCCTTGCACTGAAGACTCGTGCAGCCCGAGTCTAGGCTGCCAGCA
CAGGCAGTTGGACTGTGAGCCACAGGCGCCTCATGGCCCTACCGATCAGC
CCCGGCCTGGCTCCTCGCCTTCTGTCACTCCCACAGTAACCCAGAGCAAC
CTCTTGAACTTGCTCTCGCCCTACATCGACCCACTTGGCCCCATTCCTTA
CAACCCCCCCTGCACCGACGACTTTTGCGACACAGGCATCGGATGCTTCA
GCGTGCCTGCCTCGGGCAGCTCCTGTACTACCAGCAGCATTTGCATGCTG
CGAGACGGCTTCTGTGTTGTGGGCGAGTGCGTTGGCGAGCCCATCAATTG
CGACGATCTCAACCCTTGCACTGAAGACTCGTGCAGCCCGAGTCTAGGCT
GCCAGCACAGGCAGTTGGACTGTGAGCCACAGGCGCCTCATGGCCCTACC
GATCAGCCCCGGCCTGGCTCCTCGCCTTCTGTCACTCCCACAGTAACCCA
GAGCAACCTCTTGAACTTGCTCTCGCCCTACATCGACCCACTTGGCCCCA
TTCCTTACAACCCC
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