mRNA_M-pyrifera_M_contig99858.22959.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99858.22959.1
Unique NamemRNA_M-pyrifera_M_contig99858.22959.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99858.22959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99858contigM-pyrifera_M_contig99858:26..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size660
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.7229137-CDS-M-pyrifera_M_contig99858:25..6851622816915.7229137-CDS-M-pyrifera_M_contig99858:25..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99858 26..685 +
1692278253.3414245-CDS-M-pyrifera_M_contig99858:25..6851692278253.3414245-CDS-M-pyrifera_M_contig99858:25..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99858 26..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99858.22959.1prot_M-pyrifera_M_contig99858.22959.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99858 26..685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99858.22959.1

>prot_M-pyrifera_M_contig99858.22959.1 ID=prot_M-pyrifera_M_contig99858.22959.1|Name=mRNA_M-pyrifera_M_contig99858.22959.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
LGTNHGIIAKVGLETDIHTDIGDLDVVRADTSLSYLLQPFSGFNAPWFAL
SAGFQLAEYAASDIRDGSEARLGVELGQRFTDRISARVGYTARDRDASKA
EVYELRTGTLHAIAEYRFNSRLGAYLKYDFTHGGVVTGSPRTAKLLAVRR
VVARDRVFGPNNVAWRLNGVVHGLRLGSKIRLSKLTAVDVSAQHSVTEAD
GDNQWNVWNLSVALNHRFD*
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mRNA from alignment at M-pyrifera_M_contig99858:26..685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99858.22959.1 ID=mRNA_M-pyrifera_M_contig99858.22959.1|Name=mRNA_M-pyrifera_M_contig99858.22959.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig99858:26..685+ (Macrocystis pyrifera P11B4 male)
CTCGGGACGAACCACGGCATTATCGCCAAGGTCGGGCTCGAAACGGACAT
CCATACGGATATCGGCGACCTCGACGTCGTGCGGGCCGACACCTCCCTGA
GCTATCTGCTCCAGCCGTTCAGTGGCTTCAATGCACCCTGGTTCGCGCTC
AGCGCCGGTTTCCAGCTGGCCGAGTACGCCGCGAGCGATATTCGCGATGG
CTCGGAGGCGCGCCTCGGCGTCGAACTGGGTCAACGGTTTACCGACCGCA
TCTCTGCACGGGTCGGCTACACCGCGCGTGATCGTGATGCGTCCAAGGCG
GAAGTTTACGAACTGCGCACGGGGACCCTGCACGCCATCGCGGAATACAG
GTTCAACAGCCGGCTTGGCGCCTACCTGAAATACGATTTCACGCACGGCG
GGGTCGTCACCGGCTCCCCGCGCACCGCGAAGCTGCTGGCGGTGCGACGG
GTCGTGGCCCGCGATCGCGTCTTTGGACCGAACAACGTCGCCTGGCGGCT
GAACGGGGTGGTCCACGGCTTGCGTCTCGGGTCGAAAATCCGCCTCTCGA
AGCTCACCGCTGTCGATGTCTCCGCTCAGCATTCCGTCACCGAAGCCGAT
GGTGACAATCAATGGAATGTCTGGAACCTCTCCGTTGCGCTGAATCACCG
TTTCGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99858:26..685+

>mRNA_M-pyrifera_M_contig99858.22959.1 ID=mRNA_M-pyrifera_M_contig99858.22959.1|Name=mRNA_M-pyrifera_M_contig99858.22959.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig99858:26..685+ (Macrocystis pyrifera P11B4 male)
CTCGGGACGAACCACGGCATTATCGCCAAGGTCGGGCTCGAAACGGACAT
CCATACGGATATCGGCGACCTCGACGTCGTGCGGGCCGACACCTCCCTGA
GCTATCTGCTCCAGCCGTTCAGTGGCTTCAATGCACCCTGGTTCGCGCTC
AGCGCCGGTTTCCAGCTGGCCGAGTACGCCGCGAGCGATATTCGCGATGG
CTCGGAGGCGCGCCTCGGCGTCGAACTGGGTCAACGGTTTACCGACCGCA
TCTCTGCACGGGTCGGCTACACCGCGCGTGATCGTGATGCGTCCAAGGCG
GAAGTTTACGAACTGCGCACGGGGACCCTGCACGCCATCGCGGAATACAG
GTTCAACAGCCGGCTTGGCGCCTACCTGAAATACGATTTCACGCACGGCG
GGGTCGTCACCGGCTCCCCGCGCACCGCGAAGCTGCTGGCGGTGCGACGG
GTCGTGGCCCGCGATCGCGTCTTTGGACCGAACAACGTCGCCTGGCGGCT
GAACGGGGTGGTCCACGGCTTGCGTCTCGGGTCGAAAATCCGCCTCTCGA
AGCTCACCGCTGTCGATGTCTCCGCTCAGCATTCCGTCACCGAAGCCGAT
GGTGACAATCAATGGAATGTCTGGAACCTCTCCGTTGCGCTGAATCACCG
TTTCGACTGACTCGGGACGAACCACGGCATTATCGCCAAGGTCGGGCTCG
AAACGGACATCCATACGGATATCGGCGACCTCGACGTCGTGCGGGCCGAC
ACCTCCCTGAGCTATCTGCTCCAGCCGTTCAGTGGCTTCAATGCACCCTG
GTTCGCGCTCAGCGCCGGTTTCCAGCTGGCCGAGTACGCCGCGAGCGATA
TTCGCGATGGCTCGGAGGCGCGCCTCGGCGTCGAACTGGGTCAACGGTTT
ACCGACCGCATCTCTGCACGGGTCGGCTACACCGCGCGTGATCGTGATGC
GTCCAAGGCGGAAGTTTACGAACTGCGCACGGGGACCCTGCACGCCATCG
CGGAATACAGGTTCAACAGCCGGCTTGGCGCCTACCTGAAATACGATTTC
ACGCACGGCGGGGTCGTCACCGGCTCCCCGCGCACCGCGAAGCTGCTGGC
GGTGCGACGGGTCGTGGCCCGCGATCGCGTCTTTGGACCGAACAACGTCG
CCTGGCGGCTGAACGGGGTGGTCCACGGCTTGCGTCTCGGGTCGAAAATC
CGCCTCTCGAAGCTCACCGCTGTCGATGTCTCCGCTCAGCATTCCGTCAC
CGAAGCCGATGGTGACAATCAATGGAATGTCTGGAACCTCTCCGTTGCGC
TGAATCACCGTTTCGACTGA
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