mRNA_M-pyrifera_M_contig99856.22958.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99856.22958.1
Unique NamemRNA_M-pyrifera_M_contig99856.22958.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Match: D4S797_9FIRM (Exodeoxyribonuclease III n=20 Tax=Selenomonadaceae TaxID=1843491 RepID=D4S797_9FIRM)

HSP 1 Score: 54.3 bits (129), Expect = 3.790e-6
Identity = 28/54 (51.85%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    1 FVDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLLLIDAALSCRCGALLQVH 162
            FVD FRA +P R+GAYT+W     ARETN G RID  L+ A L  R  A  ++H
Sbjct:  182 FVDTFRALYPDRTGAYTWWSYLRHARETNAGWRIDYFLVSAELRDRIAAA-EIH 234
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BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Match: K9CUQ0_9FIRM (Exodeoxyribonuclease III (Xth) n=1 Tax=Selenomonas sp. F0473 TaxID=999423 RepID=K9CUQ0_9FIRM)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-5
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 FVDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLLLIDAALSCRCGALLQVHA 165
            FVD FRA +P R GAYT+W     ARETN G RID  L+   L  R  A  ++HA
Sbjct:  182 FVDTFRALYPDRRGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRVAAA-EIHA 235
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BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Match: A0A0G1FA55_9BACT (Exodeoxyribonuclease III n=2 Tax=unclassified Parcubacteria group TaxID=1794840 RepID=A0A0G1FA55_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-5
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 VDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLLLI 117
            +D +R  +PH++GAYT+WD  TAARE N G R+D L +
Sbjct:  188 IDTYRHFYPHKTGAYTYWDMKTAARERNVGWRLDYLFV 225
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BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Match: A0A0G1AZ23_9BACT (Exodeoxyribonuclease III n=2 Tax=Patescibacteria group TaxID=1783273 RepID=A0A0G1AZ23_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 7.650e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    4 VDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLL 111
            +D +R  +PH++GAYT+WD  TAARE N G R+D L
Sbjct:  225 IDTYRHFYPHKTGAYTYWDMKTAARERNVGWRLDYL 260
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BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Match: UPI000D7303AA (LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site) lyase 2-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D7303AA)

HSP 1 Score: 50.8 bits (120), Expect = 9.350e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 FVDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLLLIDAALS 132
            FVDAFR   P ++ AYT W TTT+AR+TN G R+D + +D  L+
Sbjct:  244 FVDAFRFFHPDQTEAYTNWSTTTSARQTNYGKRLDYIYVDERLA 287
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99856.22958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D4S797_9FIRM3.790e-651.85Exodeoxyribonuclease III n=20 Tax=Selenomonadaceae... [more]
K9CUQ0_9FIRM1.360e-550.91Exodeoxyribonuclease III (Xth) n=1 Tax=Selenomonas... [more]
A0A0G1FA55_9BACT2.670e-552.63Exodeoxyribonuclease III n=2 Tax=unclassified Parc... [more]
A0A0G1AZ23_9BACT7.650e-555.56Exodeoxyribonuclease III n=2 Tax=Patescibacteria g... [more]
UPI000D7303AA9.350e-552.27LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99856contigM-pyrifera_M_contig99856:142..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score71.2
Seed ortholog evalue3.8e-10
Seed eggNOG ortholog3067.XP_002953383.1
KEGG koko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0003824,GO:0003906,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008296,GO:0008309,GO:0008311,GO:0008408,GO:0009987,GO:0016020,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0140097,GO:1901360
EggNOG free text desc.GRF zinc finger
EggNOG OGs34MNR@3041,37R7N@33090,COG0708@1,KOG1294@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.6898155-CDS-M-pyrifera_M_contig99856:141..5221622816915.6898155-CDS-M-pyrifera_M_contig99856:141..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99856 142..522 -
1692278253.321156-CDS-M-pyrifera_M_contig99856:141..5221692278253.321156-CDS-M-pyrifera_M_contig99856:141..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99856 142..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99856.22958.1prot_M-pyrifera_M_contig99856.22958.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99856 142..522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99856.22958.1

>prot_M-pyrifera_M_contig99856.22958.1 ID=prot_M-pyrifera_M_contig99856.22958.1|Name=mRNA_M-pyrifera_M_contig99856.22958.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
FVDAFRACFPHRSGAYTFWDTTTAARETNCGSRIDLLLIDAALSCRCGAL
LQVHAVAPAGAGGVRSPASPVVETTHRDHYAREHEAARVCSCPASLVASD
LRPDVMGSDHCPAWATLRLPASALAWP
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mRNA from alignment at M-pyrifera_M_contig99856:142..522-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99856.22958.1 ID=mRNA_M-pyrifera_M_contig99856.22958.1|Name=mRNA_M-pyrifera_M_contig99856.22958.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig99856:142..522- (Macrocystis pyrifera P11B4 male)
TTCGTGGACGCGTTCCGCGCCTGCTTTCCGCATCGCTCCGGTGCGTACAC
GTTCTGGGACACCACAACCGCGGCGCGTGAGACCAACTGCGGCTCCCGGA
TTGACCTGCTGTTGATCGACGCCGCGCTGTCCTGCCGATGTGGTGCGCTG
CTGCAAGTACACGCAGTTGCACCAGCAGGTGCTGGCGGTGTCCGTTCACC
GGCCTCACCAGTGGTCGAGACCACTCATCGTGATCACTACGCGAGGGAGC
ACGAGGCTGCGCGGGTGTGCAGCTGCCCAGCCTCGCTCGTCGCAAGCGAC
CTGCGACCAGATGTGATGGGATCGGATCATTGCCCCGCGTGGGCCACGCT
GCGCCTCCCCGCTTCCGCGCTCGCCTGGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99856:142..522-

>mRNA_M-pyrifera_M_contig99856.22958.1 ID=mRNA_M-pyrifera_M_contig99856.22958.1|Name=mRNA_M-pyrifera_M_contig99856.22958.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig99856:142..522- (Macrocystis pyrifera P11B4 male)
TTCGTGGACGCGTTCCGCGCCTGCTTTCCGCATCGCTCCGGTGCGTACAC
GTTCTGGGACACCACAACCGCGGCGCGTGAGACCAACTGCGGCTCCCGGA
TTGACCTGCTGTTGATCGACGCCGCGCTGTCCTGCCGATGTGGTGCGCTG
CTGCAAGTACACGCAGTTGCACCAGCAGGTGCTGGCGGTGTCCGTTCACC
GGCCTCACCAGTGGTCGAGACCACTCATCGTGATCACTACGCGAGGGAGC
ACGAGGCTGCGCGGGTGTGCAGCTGCCCAGCCTCGCTCGTCGCAAGCGAC
CTGCGACCAGATGTGATGGGATCGGATCATTGCCCCGCGTGGGCCACGCT
GCGCCTCCCCGCTTCCGCGCTCGCCTGGCCGTTCGTGGACGCGTTCCGCG
CCTGCTTTCCGCATCGCTCCGGTGCGTACACGTTCTGGGACACCACAACC
GCGGCGCGTGAGACCAACTGCGGCTCCCGGATTGACCTGCTGTTGATCGA
CGCCGCGCTGTCCTGCCGATGTGGTGCGCTGCTGCAAGTACACGCAGTTG
CACCAGCAGGTGCTGGCGGTGTCCGTTCACCGGCCTCACCAGTGGTCGAG
ACCACTCATCGTGATCACTACGCGAGGGAGCACGAGGCTGCGCGGGTGTG
CAGCTGCCCAGCCTCGCTCGTCGCAAGCGACCTGCGACCAGATGTGATGG
GATCGGATCATTGCCCCGCGTGGGCCACGCTGCGCCTCCCCGCTTCCGCG
CTCGCCTGGCCG
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