mRNA_M-pyrifera_M_contig99854.22957.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99854.22957.1
Unique NamemRNA_M-pyrifera_M_contig99854.22957.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: A0A6U1UWS1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1UWS1_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.800e-33
Identity = 79/217 (36.41%), Postives = 118/217 (54.38%), Query Frame = 1
Query:   19 TPGFSVSEINSFDLLAQSGKSSFYSVELATSGAYDDPVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSD--LPK---PLEDATIDLFEWFCDWQWNAWLSKELPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDLVDLRYVFHSELEEYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASDEHEPLGAQCSMFGTWGDR 654
            T G+S S + S++ + +S  S+ Y+V L+    Y+ P+Y  +L G R  MGYDYGV+ G+     Y      +F +  +PK   PL +  I L     DWQWN WLS ++     +EL G+  GGNA+GI+DL   +++ + LANLPSDL DL++VF  E  ++K             ++ + + + + +I  K  A     P G QCSMFG WG R
Sbjct:   23 TVGYSQSNVTSYNQMGKSNNSTLYNVTLSND-PYEYPIYLIDLWGDRTTMGYDYGVLLGAQIVDCYNTFFSSIFKEAGVPKYLVPLLERAIKLL---LDWQWNNWLSVQVTPELLQELDGIEQGGNAIGISDLKSYITQTITLANLPSDLSDLKFVFEDEYNQWKAQNGGN-------DSFDPSDSELLQIIQKAIAK---APAGLQCSMFGVWGSR 225          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: A0A5A8DYA8_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DYA8_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 4.630e-26
Identity = 82/220 (37.27%), Postives = 117/220 (53.18%), Query Frame = 1
Query:   25 GFSVSEINSFDLLAQSGKSSFYSVELATSGAY--DDPVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLP-KPLEDATIDLFEWFCDWQWNAWLSKELPERYFEELQGLADGGNAVGI--ADLDKLMSRVLVLANLPSDLVDLRYVF-----HSELEEYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASDEHEPLGAQCSMFGTWGDR 654
            G++V+  +S +L+A+       S  L   GAY  + P +   L G+RYEMGYDYG++ G   +A + + L  +  D    PLE   ++LF    DWQWN +++ ELPE+Y EEL+G   GG A G+   ++  L++R LVLANLP  L DL YV      H        + A   AVR+L E +     F  R+  K +     +PL   CSM G WG+R
Sbjct:   23 GYTVASPSSVNLVARGAYKGSLST-LQVDGAYTSEAPPFLLQLEGTRYEMGYDYGLLFGIQGKAVFESLLKSILGDSTLAPLEQGALELF---LDWQWNDYMASELPEQYHEELRGATAGGAAAGVPGVEVGTLLTRGLVLANLPGSLEDLVYVLEDEAAHPNATSTPSYQALLGAVRSLGEAS--VAQFARRLVTKGW-----QPLS--CSMIGFWGNR 229          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: D3BA95_POLPP (Uncharacterized protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BA95_POLPP)

HSP 1 Score: 107 bits (267), Expect = 2.120e-23
Identity = 77/226 (34.07%), Postives = 113/226 (50.00%), Query Frame = 1
Query:    7 VIPDTPGFSVSEINSFDLLAQSGKSSFYSVELATSGAYDDPVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLPKPLEDATIDLFEWFCDWQWNAWLSKELPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDLV-DLRYVFHSELE---------EYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASDEHEPLGAQCSMFGTWGDR 654
            V   TP F +    +  L+ Q  +S  Y +   +S  Y  P+Y ANL G+ YEMGY YG     +AEA   +    L + LP   ++A  D+ E F DWQ+  +LSK+LP++YF+EL+GL+DG N  G+ D+  L  R + +AN P D+  ++ Y+  +E E         EYK    S + VR L +        ++  +G             QCS F  WGDR
Sbjct:   18 VYTTTPSFQIDNQATVTLIKQYNQSQLYEI---SSFGYAQPIYVANLTGTSYEMGYAYGYF---FAEAIVESYHSLLDNVLPN--QEAQ-DVLELFLDWQFKDFLSKQLPQQYFDELRGLSDGANEAGMPDVSVLAIRTMTIANFPGDIQSNIEYLLENEAESLVSYLFTEEYKNIIESGKFVRVLEQ------LALSGFKGW------------QCSHFSVWGDR 216          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: A0A152A2G0_9MYCE (DUSP domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2G0_9MYCE)

HSP 1 Score: 101 bits (251), Expect = 4.070e-21
Identity = 70/221 (31.67%), Postives = 111/221 (50.23%), Query Frame = 1
Query:   19 TPGFSVSEINSFDLLAQSGKSSFYSVELATSGAYDDPVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLPKPLEDATIDLFEWFCDWQWNAWLSKELPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDLVD-LRYVFHSELE--EYKEHTASKR------AVRALTENTEKTMTFMNRIRGKIFASDEHEPLGAQCSMFGTWGDR 654
            TP F +    +  L+ +  +S  YS+   +S  Y DP+Y ANL GS YE+GY  G     + EA Y   L  + + LP+  E    DL + F +WQWN +LSK+ P+ Y +E+QG+ DG  + G     K ++  +VL + P    + + Y+   E+E  E+ E+ +S+       ++  +  N ++ +   N   G     D  +  G QCS F  WGDR
Sbjct:  175 TPSFKIDYNPTLSLIKEYNQSQLYSL---SSDGYQDPIYVANLTGSHYEIGYAIGYF---FNEAFYENYLAIIDTVLPEWYER---DLLDIFMNWQWNDFLSKQFPQEYMDEIQGIYDGSASAGFTIPPKTITNAVVLTSFPGWAQENIEYLLIGEMESLEFTEYLSSQGHEKYADSIEEILLNLKEQVMIRN---GGETPFDSDKIRGMQCSHFSVWGDR 383          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: UPI00064497FF (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI00064497FF)

HSP 1 Score: 92.4 bits (228), Expect = 3.140e-18
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   70 SGKSSFYSVELATSGAYDDPVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLPKPLEDATIDLFEWFCDWQWNAWLSKELPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDL 453
            S +SS Y  E+A+ G Y  P Y AN+ GS YEMGY YG     +AEA        ++S LP   ED  ID  E F DWQ+  +LSK++P+ + +E+QG+ DG  +VG+ DL  ++ R + LAN P D+
Sbjct:    2 SNQSSLY--EVASFG-YQIPFYVANMTGSHYEMGYAYGTF---FAEAILEVYNNLMYSILPNT-ED--IDAMELFIDWQYQDFLSKQMPKDFVDEMQGVVDGATSVGMPDLGPILHRAITLANFPGDI 120          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: A0A812R3Y8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R3Y8_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 3.100e-16
Identity = 68/198 (34.34%), Postives = 84/198 (42.42%), Query Frame = 1
Query:  127 PVYFANLAGSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLPKPLEDATIDLFEWFCDWQWNAWLSKELPER---YFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDLVDLRYVFHSELE----------EYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASDEHEP----LGA-----QCSMFGTWGDR 654
            P   A+L GS YE GYD+G + G  A+    A    +      PL     D    F DWQW  +LSK +  +     EE+QG ADG  AVG++D   L+SR  VLAN P  L DL YV   E                H A+  AVRA             R+   + A    +P    LG      QCSM   WG R
Sbjct:   63 PPMVADLHGSSYEQGYDFGYLTGVGAQHNLDALFAKILGT--GPLSGLAKDALNVFMDWQWKDYLSKAVEVQAPWLMEEIQGFADGAAAVGVSDGGLLLSRATVLANFPGTLTDLIYVLADEFGIPVSATARHVAAPGHAAAAAAVRAAVVRALNAHPVSQRMAAVLPAPHAADPAAWLLGLAWPTMQCSMMAFWGGR 258          
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Match: A0A812TTJ1_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TTJ1_SYMMI)

HSP 1 Score: 62.8 bits (151), Expect = 5.300e-8
Identity = 42/108 (38.89%), Postives = 51/108 (47.22%), Query Frame = 1
Query:  331 LPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSDLVDLRYVFHSELEEYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASDEHEPLGAQCSMFGTWGDR 654
            +P+ Y +E  GL  GG    IADLDK+ +R + LANLP D  D+ YV   E +       +K A R   E  E           KIF        G QCSMFG WG R
Sbjct:    1 VPQEYMDEFAGLKAGGLFHNIADLDKMATRGVTLANLPGDGEDIVYVLMDEFQ-------NKNAARLSQEQKEMLPDV-----AKIFVKYN----GHQCSMFGVWGQR 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99854.22957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6U1UWS1_9EUKA1.800e-3336.41Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A5A8DYA8_CAFRO4.630e-2637.27Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
D3BA95_POLPP2.120e-2334.07Uncharacterized protein n=1 Tax=Polysphondylium pa... [more]
A0A152A2G0_9MYCE4.070e-2131.67DUSP domain-containing protein n=1 Tax=Tieghemoste... [more]
UPI00064497FF3.140e-1842.97hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A812R3Y8_9DINO3.100e-1634.34Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A812TTJ1_SYMMI5.300e-838.89Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99854contigM-pyrifera_M_contig99854:30..683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue6.3e-21
Seed eggNOG ortholog5786.XP_003287059.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
EggNOG OGs2CY39@1,2S1P1@2759,3X9YF@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.6523817-CDS-M-pyrifera_M_contig99854:29..6831622816915.6523817-CDS-M-pyrifera_M_contig99854:29..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99854 30..683 +
1692278253.3025768-CDS-M-pyrifera_M_contig99854:29..6831692278253.3025768-CDS-M-pyrifera_M_contig99854:29..683Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99854 30..683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99854.22957.1prot_M-pyrifera_M_contig99854.22957.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99854 30..683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99854.22957.1

>prot_M-pyrifera_M_contig99854.22957.1 ID=prot_M-pyrifera_M_contig99854.22957.1|Name=mRNA_M-pyrifera_M_contig99854.22957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
AEVIPDTPGFSVSEINSFDLLAQSGKSSFYSVELATSGAYDDPVYFANLA
GSRYEMGYDYGVMAGSYAEAAYTAALGGLFSDLPKPLEDATIDLFEWFCD
WQWNAWLSKELPERYFEELQGLADGGNAVGIADLDKLMSRVLVLANLPSD
LVDLRYVFHSELEEYKEHTASKRAVRALTENTEKTMTFMNRIRGKIFASD
EHEPLGAQCSMFGTWGDR
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mRNA from alignment at M-pyrifera_M_contig99854:30..683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99854.22957.1 ID=mRNA_M-pyrifera_M_contig99854.22957.1|Name=mRNA_M-pyrifera_M_contig99854.22957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig99854:30..683+ (Macrocystis pyrifera P11B4 male)
GCAGAAGTGATTCCAGACACGCCCGGCTTCTCGGTGAGCGAGATTAACTC TTTCGACCTCCTCGCTCAGAGCGGCAAGTCGTCCTTCTACTCGGTAGAGC TCGCCACCTCGGGCGCCTACGACGACCCAGTGTACTTTGCAAACCTCGCT GGCTCTCGCTACGAGATGGGATACGACTACGGCGTCATGGCTGGCTCCTA CGCCGAGGCGGCCTACACGGCGGCCCTCGGTGGCCTCTTCTCGGACCTCC CCAAGCCGCTCGAAGACGCAACCATCGACCTCTTCGAGTGGTTCTGCGAC TGGCAGTGGAACGCCTGGCTCTCGAAGGAGCTGCCGGAGCGCTACTTCGA GGAGCTCCAGGGCCTGGCTGACGGCGGCAACGCCGTGGGCATTGCCGACC TCGACAAGTTGATGAGCCGCGTGCTGGTGCTGGCCAACCTTCCCAGCGAC CTCGTGGACCTCCGCTACGTCTTCCACTCGGAGCTGGAGGAGTACAAGGA GCACACCGCCAGCAAGAGGGCGGTGCGCGCGCTCACCGAGAACACCGAGA AGACCATGACCTTCATGAACCGCATCCGCGGAAAGATCTTTGCTTCGGAC GAGCATGAGCCCCTGGGAGCGCAGTGCAGCATGTTCGGCACCTGGGGAGA CCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99854:30..683+

>mRNA_M-pyrifera_M_contig99854.22957.1 ID=mRNA_M-pyrifera_M_contig99854.22957.1|Name=mRNA_M-pyrifera_M_contig99854.22957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig99854:30..683+ (Macrocystis pyrifera P11B4 male)
GCAGAAGTGATTCCAGACACGCCCGGCTTCTCGGTGAGCGAGATTAACTC
TTTCGACCTCCTCGCTCAGAGCGGCAAGTCGTCCTTCTACTCGGTAGAGC
TCGCCACCTCGGGCGCCTACGACGACCCAGTGTACTTTGCAAACCTCGCT
GGCTCTCGCTACGAGATGGGATACGACTACGGCGTCATGGCTGGCTCCTA
CGCCGAGGCGGCCTACACGGCGGCCCTCGGTGGCCTCTTCTCGGACCTCC
CCAAGCCGCTCGAAGACGCAACCATCGACCTCTTCGAGTGGTTCTGCGAC
TGGCAGTGGAACGCCTGGCTCTCGAAGGAGCTGCCGGAGCGCTACTTCGA
GGAGCTCCAGGGCCTGGCTGACGGCGGCAACGCCGTGGGCATTGCCGACC
TCGACAAGTTGATGAGCCGCGTGCTGGTGCTGGCCAACCTTCCCAGCGAC
CTCGTGGACCTCCGCTACGTCTTCCACTCGGAGCTGGAGGAGTACAAGGA
GCACACCGCCAGCAAGAGGGCGGTGCGCGCGCTCACCGAGAACACCGAGA
AGACCATGACCTTCATGAACCGCATCCGCGGAAAGATCTTTGCTTCGGAC
GAGCATGAGCCCCTGGGAGCGCAGTGCAGCATGTTCGGCACCTGGGGAGA
CCGCGCAGAAGTGATTCCAGACACGCCCGGCTTCTCGGTGAGCGAGATTA
ACTCTTTCGACCTCCTCGCTCAGAGCGGCAAGTCGTCCTTCTACTCGGTA
GAGCTCGCCACCTCGGGCGCCTACGACGACCCAGTGTACTTTGCAAACCT
CGCTGGCTCTCGCTACGAGATGGGATACGACTACGGCGTCATGGCTGGCT
CCTACGCCGAGGCGGCCTACACGGCGGCCCTCGGTGGCCTCTTCTCGGAC
CTCCCCAAGCCGCTCGAAGACGCAACCATCGACCTCTTCGAGTGGTTCTG
CGACTGGCAGTGGAACGCCTGGCTCTCGAAGGAGCTGCCGGAGCGCTACT
TCGAGGAGCTCCAGGGCCTGGCTGACGGCGGCAACGCCGTGGGCATTGCC
GACCTCGACAAGTTGATGAGCCGCGTGCTGGTGCTGGCCAACCTTCCCAG
CGACCTCGTGGACCTCCGCTACGTCTTCCACTCGGAGCTGGAGGAGTACA
AGGAGCACACCGCCAGCAAGAGGGCGGTGCGCGCGCTCACCGAGAACACC
GAGAAGACCATGACCTTCATGAACCGCATCCGCGGAAAGATCTTTGCTTC
GGACGAGCATGAGCCCCTGGGAGCGCAGTGCAGCATGTTCGGCACCTGGG
GAGACCGC
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