mRNA_M-pyrifera_M_contig99850.22954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99850.22954.1
Unique NamemRNA_M-pyrifera_M_contig99850.22954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A2E6CM49_9ACTN (PlsC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6CM49_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 6.320e-10
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDW 210
            LL+A P AD+++IGH GFE+ +S  E+  N P  + + L+++ V  +++P +  D++ +LD LW  +D W
Sbjct:  265 LLDATPGADLVLIGHSGFEKFSSFQEIFANVPFTSPIHLTLKRVPHTEIPATDRDKVKFLDDLWHGVDLW 334          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A7C1YDV2_9ACTN (PlsC domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YDV2_9ACTN)

HSP 1 Score: 63.5 bits (153), Expect = 7.030e-10
Identity = 30/71 (42.25%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWV 213
            LLE  PDADV+V+GH GFE+      + R+ PL   VR+ +    R+DVP   ++   WL   W +LD+WV
Sbjct:  338 LLEGRPDADVVVVGHVGFEQLTDPVHIWRSVPLRYPVRIRLWRHSRADVPSGREEFARWLAARWEELDNWV 408          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A176QGL0_9MICO (PlsC domain-containing protein n=4 Tax=Janibacter melonis TaxID=262209 RepID=A0A176QGL0_9MICO)

HSP 1 Score: 59.7 bits (143), Expect = 1.490e-8
Identity = 31/81 (38.27%), Postives = 42/81 (51.85%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVL--RSDVPESTDDRIAWLDRLWTDLDDWVAATNSAGV 237
            +LEA PDADV+V+ H G E   S  ++ R  P   T  L +R       DVP   D+   WLD  WT++D WV +    G+
Sbjct:  256 ILEARPDADVVVVAHTGLELFDSPGDIWRGIPFGPTEGLVVRTTTYPAGDVPRDPDEVATWLDERWTEVDAWVESHRRPGL 336          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A2E4KCZ5_9ACTN (PlsC domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4KCZ5_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 5.100e-8
Identity = 25/71 (35.21%), Postives = 40/71 (56.34%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWV 213
            LL+A PD+D+ +IGH GF+   S  E+ +N P    + + IR +   D P    +R+ ++D  W  LD W+
Sbjct:  241 LLDANPDSDLFLIGHNGFQPFGSFKEILKNIPFKAPIEVFIRQIPICDFPIDKSERLKFIDSEWLALDQWL 311          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A0S8F3H2_9DELT (PlsC domain-containing protein n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8F3H2_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 5.360e-8
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWV 213
            LLEA+PDADVLV+ H+G E  A + ++   + +   V +SI  +  S++P S D R  WL  LW  +DD+V
Sbjct:  280 LLEAVPDADVLVVAHRGLEGLAEVTDLLSGSVVGKNVEVSIWRIPASEIP-SGDARRRWLFDLWKRVDDFV 349          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A661MLA8_9DELT (PlsC domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661MLA8_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 5.370e-8
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWVAA 219
            LL A PDADVL++ H+G E  A + ++   A +   V++ I  +  +D+P+  DDR+ WL   W  +DD+V A
Sbjct:  280 LLNAAPDADVLIVAHRGLEGMAEVTDLLSGAVVGKKVQIRIWRINAADIPKG-DDRLRWLFDWWKRVDDFVHA 351          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A248YS95_9ACTN (Glycerol acyltransferase n=1 Tax=Plantactinospora sp. KBS50 TaxID=2024580 RepID=A0A248YS95_9ACTN)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 23/72 (31.94%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    4 LEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWVAA 219
            L+A P+A V+ + H G +R  ++ ++ R  P+D  + +    V   ++P    +RI WL R W+ +D+WV A
Sbjct:  262 LDAAPEAGVIFVAHTGLDRLTTVADIWRELPMDKRIVMRFWSVPPEEIPAGRQERIDWLFRWWSRIDEWVEA 333          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: UPI001EFB6C44 (hypothetical protein n=1 Tax=Yimella sp. NH-Cas1 TaxID=2917726 RepID=UPI001EFB6C44)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWV 213
            +L+A PD+ VLV GHQG E   S+P++ R  PL   + + +R      +P+   D  AWL   W  LDDW 
Sbjct:   89 ILQARPDSQVLVAGHQGVEDLRSVPDIWRALPLRRQIHIDVRQA--DSLPDEHID--AWLQDEWERLDDWT 155          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A4Q3XG64_9MICO (PlsC domain-containing protein n=2 Tax=Yimella TaxID=908935 RepID=A0A4Q3XG64_9MICO)

HSP 1 Score: 55.5 bits (132), Expect = 4.710e-7
Identity = 29/73 (39.73%), Postives = 40/73 (54.79%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWVAA 219
            +L+A PD+ VLV GHQG E   S+P++ R  PL   + + +R      +P+   D  AWL   W  LDDW  A
Sbjct:  256 ILQARPDSQVLVAGHQGVEDLRSVPDIWRALPLRRQIHIDVRQA--DSLPDEHID--AWLQDEWERLDDWTDA 324          
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Match: A0A6J7PWZ0_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7PWZ0_9ZZZZ)

HSP 1 Score: 54.7 bits (130), Expect = 8.970e-7
Identity = 27/73 (36.99%), Postives = 41/73 (56.16%), Query Frame = 1
Query:    1 LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVPESTDDRIAWLDRLWTDLDDWVAA 219
            LL+  P ADV+V+GH GFE+  S+  + R+ P    + + +  V R +VP   + R+ WL   W  LD  +AA
Sbjct:  262 LLDGAPHADVVVLGHLGFEQCNSLKAIHRSVPFRRPICVWMWRVPRDEVPAGREQRVDWLYGQWLKLDRSIAA 334          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99850.22954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2E6CM49_9ACTN6.320e-1037.14PlsC domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A7C1YDV2_9ACTN7.030e-1042.25PlsC domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A176QGL0_9MICO1.490e-838.27PlsC domain-containing protein n=4 Tax=Janibacter ... [more]
A0A2E4KCZ5_9ACTN5.100e-835.21PlsC domain-containing protein n=1 Tax=Acidimicrob... [more]
A0A0S8F3H2_9DELT5.360e-842.25PlsC domain-containing protein n=1 Tax=Myxococcale... [more]
A0A661MLA8_9DELT5.370e-838.36PlsC domain-containing protein n=1 Tax=Deltaproteo... [more]
A0A248YS95_9ACTN1.350e-731.94Glycerol acyltransferase n=1 Tax=Plantactinospora ... [more]
UPI001EFB6C442.710e-739.44hypothetical protein n=1 Tax=Yimella sp. NH-Cas1 T... [more]
A0A4Q3XG64_9MICO4.710e-739.73PlsC domain-containing protein n=2 Tax=Yimella Tax... [more]
A0A6J7PWZ0_9ZZZZ8.970e-736.99Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99850contigM-pyrifera_M_contig99850:433..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog479433.Caci_4152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Phospholipid glycerol acyltransferase
EggNOG OGs2I8I4@201174,COG0204@1,COG0204@2
COG Functional cat.I
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.5527296-CDS-M-pyrifera_M_contig99850:432..6841622816915.5527296-CDS-M-pyrifera_M_contig99850:432..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99850 433..684 -
1692278253.265523-CDS-M-pyrifera_M_contig99850:432..6841692278253.265523-CDS-M-pyrifera_M_contig99850:432..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99850 433..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99850.22954.1prot_M-pyrifera_M_contig99850.22954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99850 433..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99850.22954.1

>prot_M-pyrifera_M_contig99850.22954.1 ID=prot_M-pyrifera_M_contig99850.22954.1|Name=mRNA_M-pyrifera_M_contig99850.22954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
LLEALPDADVLVIGHQGFERAASIPEMARNAPLDTTVRLSIRHVLRSDVP
ESTDDRIAWLDRLWTDLDDWVAATNSAGVPTYG*
back to top

mRNA from alignment at M-pyrifera_M_contig99850:433..684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99850.22954.1 ID=mRNA_M-pyrifera_M_contig99850.22954.1|Name=mRNA_M-pyrifera_M_contig99850.22954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig99850:433..684- (Macrocystis pyrifera P11B4 male)
CTCCTCGAGGCCCTTCCCGACGCCGATGTGCTCGTGATCGGTCACCAGGG TTTCGAGCGGGCAGCGTCGATCCCCGAGATGGCGAGAAATGCCCCTCTGG ACACCACGGTGCGGCTGTCGATCCGTCACGTGCTGCGCTCGGACGTCCCC GAGTCGACCGACGATCGGATCGCCTGGCTCGATCGCCTCTGGACCGACCT CGACGATTGGGTCGCTGCCACCAATTCGGCCGGGGTTCCGACGTACGGTT GA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99850:433..684-

>mRNA_M-pyrifera_M_contig99850.22954.1 ID=mRNA_M-pyrifera_M_contig99850.22954.1|Name=mRNA_M-pyrifera_M_contig99850.22954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig99850:433..684- (Macrocystis pyrifera P11B4 male)
CTCCTCGAGGCCCTTCCCGACGCCGATGTGCTCGTGATCGGTCACCAGGG
TTTCGAGCGGGCAGCGTCGATCCCCGAGATGGCGAGAAATGCCCCTCTGG
ACACCACGGTGCGGCTGTCGATCCGTCACGTGCTGCGCTCGGACGTCCCC
GAGTCGACCGACGATCGGATCGCCTGGCTCGATCGCCTCTGGACCGACCT
CGACGATTGGGTCGCTGCCACCAATTCGGCCGGGGTTCCGACGTACGGTT
GACTCCTCGAGGCCCTTCCCGACGCCGATGTGCTCGTGATCGGTCACCAG
GGTTTCGAGCGGGCAGCGTCGATCCCCGAGATGGCGAGAAATGCCCCTCT
GGACACCACGGTGCGGCTGTCGATCCGTCACGTGCTGCGCTCGGACGTCC
CCGAGTCGACCGACGATCGGATCGCCTGGCTCGATCGCCTCTGGACCGAC
CTCGACGATTGGGTCGCTGCCACCAATTCGGCCGGGGTTCCGACGTACGG
TTGA
back to top