mRNA_M-pyrifera_M_contig99845.22952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99845.22952.1
Unique NamemRNA_M-pyrifera_M_contig99845.22952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99845.22952.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 7.740e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QADAGDIRRACKGLGTNDSRLVAIVCGRTKPHLARVDEYYHSLFG 135
            QAD GDIR ACKGLGTNDSRLV+I+CGRTK HLARVD+YYHSL+G
Sbjct:  357 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYG 401
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BLAST of mRNA_M-pyrifera_M_contig99845.22952.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 7.740e-19
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QADAGDIRRACKGLGTNDSRLVAIVCGRTKPHLARVDEYYHSLFG 135
            QAD GDIR ACKGLGTNDSRLV+I+CGRTK HLARVD+YYHSL+G
Sbjct:  378 QADCGDIREACKGLGTNDSRLVSIICGRTKKHLARVDQYYHSLYG 422
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BLAST of mRNA_M-pyrifera_M_contig99845.22952.1 vs. uniprot
Match: D8LG01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG01_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 QADAGDIRRACKGLGTNDSRLVAIVCGRTKPHLARVDEYYHSLFG 135
            + DA  I RACKG+GTN+ R++ I+C RTK  + R+DE Y +++G
Sbjct:  289 KVDAEQIWRACKGMGTNEGRVIGIICTRTKSQVERIDEMYRTMYG 333
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BLAST of mRNA_M-pyrifera_M_contig99845.22952.1 vs. uniprot
Match: A0A177BBV0_9BILA (Annexin n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177BBV0_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 8.020e-6
Identity = 18/44 (40.91%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 ADAGDIRRACKGLGTNDSRLVAIVCGRTKPHLARVDEYYHSLFG 135
            AD+  I  AC+GLGTN++++++I+C R K H+ ++ + Y S++G
Sbjct:   20 ADSAKIYEACQGLGTNEAKIISILCNRPKDHIIKIVKTYESVYG 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99845.22952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L407_9PHAE7.740e-1984.44Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FJE4_ECTSI7.740e-1984.44Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LG01_ECTSI3.980e-848.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A177BBV0_9BILA8.020e-640.91Annexin n=1 Tax=Intoshia linei TaxID=1819745 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99845contigM-pyrifera_M_contig99845:404..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog2880.D7FJE4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.4881802-CDS-M-pyrifera_M_contig99845:403..5381622816915.4881802-CDS-M-pyrifera_M_contig99845:403..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99845 404..538 -
1692278253.2324007-CDS-M-pyrifera_M_contig99845:403..5381692278253.2324007-CDS-M-pyrifera_M_contig99845:403..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99845 404..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99845.22952.1prot_M-pyrifera_M_contig99845.22952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99845 404..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99845.22952.1

>prot_M-pyrifera_M_contig99845.22952.1 ID=prot_M-pyrifera_M_contig99845.22952.1|Name=mRNA_M-pyrifera_M_contig99845.22952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
QADAGDIRRACKGLGTNDSRLVAIVCGRTKPHLARVDEYYHSLFG
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mRNA from alignment at M-pyrifera_M_contig99845:404..538-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99845.22952.1 ID=mRNA_M-pyrifera_M_contig99845.22952.1|Name=mRNA_M-pyrifera_M_contig99845.22952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig99845:404..538- (Macrocystis pyrifera P11B4 male)
CAGGCTGACGCCGGAGATATCCGCAGGGCGTGCAAAGGTCTCGGCACGAA
CGACTCCCGTCTGGTTGCCATCGTCTGCGGGCGCACGAAGCCTCACCTGG
CTAGGGTGGACGAGTACTACCACTCCCTCTTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99845:404..538-

>mRNA_M-pyrifera_M_contig99845.22952.1 ID=mRNA_M-pyrifera_M_contig99845.22952.1|Name=mRNA_M-pyrifera_M_contig99845.22952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig99845:404..538- (Macrocystis pyrifera P11B4 male)
CAGGCTGACGCCGGAGATATCCGCAGGGCGTGCAAAGGTCTCGGCACGAA
CGACTCCCGTCTGGTTGCCATCGTCTGCGGGCGCACGAAGCCTCACCTGG
CTAGGGTGGACGAGTACTACCACTCCCTCTTCGGCCAGGCTGACGCCGGA
GATATCCGCAGGGCGTGCAAAGGTCTCGGCACGAACGACTCCCGTCTGGT
TGCCATCGTCTGCGGGCGCACGAAGCCTCACCTGGCTAGGGTGGACGAGT
ACTACCACTCCCTCTTCGGC
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