mRNA_M-pyrifera_M_contig99800.22950.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99800.22950.1
Unique NamemRNA_M-pyrifera_M_contig99800.22950.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A2E7KIL0_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KIL0_9PLAN)

HSP 1 Score: 451 bits (1159), Expect = 3.780e-155
Identity = 225/228 (98.68%), Postives = 228/228 (100.00%), Query Frame = 1
Query:    1 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHKRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 684
            GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPS+QADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVN+QKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFH+RDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG
Sbjct:  244 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSDQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNDQKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHQRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 471          
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A6I6ADB1_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ADB1_9PLAN)

HSP 1 Score: 204 bits (518), Expect = 8.310e-59
Identity = 110/228 (48.25%), Postives = 153/228 (67.11%), Query Frame = 1
Query:    1 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHKRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 684
            GIELLARQD G AL VWQS FL+ PE+ ++ S+LI+ E+R A P+ A+FVSG    L  L+K     +  D   LL+  DSELWRF + L+LE+ARLR D++LL+L S  LLEQS RLY   +EE  N  NDL  LY+SAF AAQ++N+++LQ +LLSR++ LYP++GE + ++L ++  Q  DW YLF       +WL ++ V+L ++   +G    E G+LWAT G
Sbjct:  260 GIELLARQDEGQALLVWQSSFLDYPEIASNESQLISPESRKASPELAQFVSGVNVCLHQLQKETYKESPEDFKRLLQEPDSELWRFNVLLSLESARLRADQKLLKLVSNSLLEQSERLYSISREEYENSPNDLCYLYFSAFYAAQRLNDRELQRDLLSRLLKLYPQMGEFYTDVLYDQQSQNLDWFYLFSDLRLDREWLPQFEVVLLKDSGPYGYSKAEFGMLWATFG 487          
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A517RA45_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RA45_9PLAN)

HSP 1 Score: 199 bits (505), Expect = 6.080e-57
Identity = 107/227 (47.14%), Postives = 144/227 (63.44%), Query Frame = 1
Query:    1 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHKRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATT 681
            GI+LLA++D  +AL +WQS FL +PE++ + S L+  E+  A P    FV+G  S L LLR      +   LS LL+  +SELWRFC+ L+LETARLR DR+LLQLAS+ LLEQS RLY  ++EE  NM  DL CLYYSAFRAA++VN+ KLQ +LL R++ + P +  ++ N+L   H    DW  L         WL +Y  +     E++  G YE G+LWATT
Sbjct:  256 GIDLLAKKDESMALMLWQSGFLTDPEMVRNSSLLLLPESHKAAPKLHHFVAGVNSCLNLLRTQTYQKSPEALSKLLQEPESELWRFCVLLSLETARLRADRKLLQLASRSLLEQSDRLYSFKREEDENMAEDLRCLYYSAFRAAKRVNDSKLQQKLLERILSIDPDIDGTYHNVLTIHHTDISDWSQLLSDAAIDPKWLKKYEEISLNTFEKYLFGQYEIGMLWATT 482          
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A517VDJ6_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517VDJ6_9PLAN)

HSP 1 Score: 187 bits (475), Expect = 1.560e-52
Identity = 108/230 (46.96%), Postives = 144/230 (62.61%), Query Frame = 1
Query:    1 GIELLARQDA--GLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHKRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 684
            GI LLA++D   GLAL VW+SDFLE PEV    S L++ + R   P  A  VSG  S L  LRK     N    + LL+  DSELWRF + L+LETARLR D  LLQL ++ LLEQS RLY   +EE  N  NDL  LY+SAF AAQ++N++KLQ +LLSR++ LYP++G+ + ++L ++  +  DW YLF  R  A  W  ++  +L ++    G    E G+LWAT G
Sbjct:  258 GIALLAKKDKNEGLALLVWKSDFLEYPEVSAPDSVLLSPDIRKTSPKLAHIVSGVNSCLSQLRKQTYKKNPEVFTRLLQEPDSELWRFQVLLSLETARLRADHNLLQLTARSLLEQSERLYSTSREEYENSPNDLCYLYFSAFYAAQRLNDRKLQDDLLSRLLKLYPQMGDYYTDVLYDQQSKNLDWFYLFSDRALAPVWRQKFEAVLLKDSGPQGFSKSEFGMLWATFG 487          
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A517W3U3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W3U3_9PLAN)

HSP 1 Score: 176 bits (445), Expect = 3.490e-48
Identity = 101/230 (43.91%), Postives = 143/230 (62.17%), Query Frame = 1
Query:    1 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRVG--ESFFNILDERHIQKQDWLYLFHKRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 684
            G++LLA++D  LA+ +WQS FLE   V  + S L++ +     P  +RF+S  KS+L L R          L+ALL+  DSELWRF + LTLETARL  D +LLQLAS+ LLEQS RLY+P+ E+  +M+ DLN LY+S +RAA++VNN+KLQ+EL+ RM+ L+P     +S  NIL +R  +   W YL   R     W+ ++    +E+  E G+  Y  G+  A TG
Sbjct:  260 GLDLLAKRDEPLAILIWQSRFLETFGVEVNNSILLSSDRLKTHPKLSRFISSVKSILNLFRNQTYKKRPEVLTALLQEPDSELWRFYMLLTLETARLCADEKLLQLASRNLLEQSQRLYNPKNEDYKHMLRDLNILYFSTYRAARRVNNKKLQNELMKRMLSLFPAASNEDSHNNILSDRIDEISIWAYLISDRSGDPMWIQKF----EEQAGELGA--YYIGIFCAITG 483          
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Match: A0A2E7K4X4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7K4X4_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 5.830e-43
Identity = 92/231 (39.83%), Postives = 141/231 (61.04%), Query Frame = 1
Query:    1 GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFVSGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQDRQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQKLQHELLSRMVLLYPRV-GESFFNILDERHIQKQDWLYLFH--KRDPASDWLWEYTVMLQEEVEEFGSGIYEAGVLWATTG 684
            G+ELLA++D   A+++WQS +LEN  V  S S +++ +N+   P  + F+S  KS+L++LR          LSALL+  DSE+WRF + LTLETARL  D +LL L +  LLEQS RL++P  ++  NMI DL+ LY+SA+RAA++VN++K Q E++ R++ L+P++  E  F++L     +   W +L      D  S   +E T+    E        +  G++WATTG
Sbjct:  260 GLELLAKKDESSAIQIWQSRYLENYGVEVSNSIILSSKNQINCPKLSHFISSVKSILDILRNQTYKKKPEVLSALLQEPDSEIWRFYVLLTLETARLYADEKLLHLGTCNLLEQSQRLHNPNVDDTENMIQDLSILYFSAYRAAKRVNDKKTQKEMMKRLLSLFPKITDEGIFDVLSTNVDEISIWAFLISDSSHDGVSLHNFEETLFRASEGLVGKLETHCIGIIWATTG 490          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99800.22950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KIL0_9PLAN3.780e-15598.68Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A6I6ADB1_9PLAN8.310e-5948.25Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517RA45_9PLAN6.080e-5747.14Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A0A517VDJ6_9PLAN1.560e-5246.96Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A517W3U3_9PLAN3.490e-4843.91Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A2E7K4X4_9PLAN5.830e-4339.83Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99800contigM-pyrifera_M_contig99800:2..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.3058336-CDS-M-pyrifera_M_contig99800:1..6851622816915.3058336-CDS-M-pyrifera_M_contig99800:1..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99800 2..685 -
1692278253.1087284-CDS-M-pyrifera_M_contig99800:1..6851692278253.1087284-CDS-M-pyrifera_M_contig99800:1..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99800 2..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99800.22950.1prot_M-pyrifera_M_contig99800.22950.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99800 2..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99800.22950.1

>prot_M-pyrifera_M_contig99800.22950.1 ID=prot_M-pyrifera_M_contig99800.22950.1|Name=mRNA_M-pyrifera_M_contig99800.22950.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
GIELLARQDAGLALRVWQSDFLENPEVLTSVSRLIAQENRAAFPDFARFV
SGTKSLLELLRKTPDPSNQADLSALLEHEDSELWRFCLFLTLETARLRQD
RQLLQLASKKLLEQSGRLYDPQQEEAFNMINDLNCLYYSAFRAAQQVNNQ
KLQHELLSRMVLLYPRVGESFFNILDERHIQKQDWLYLFHKRDPASDWLW
EYTVMLQEEVEEFGSGIYEAGVLWATTG
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mRNA from alignment at M-pyrifera_M_contig99800:2..685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99800.22950.1 ID=mRNA_M-pyrifera_M_contig99800.22950.1|Name=mRNA_M-pyrifera_M_contig99800.22950.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig99800:2..685- (Macrocystis pyrifera P11B4 male)
GGAATCGAACTGTTGGCCAGGCAAGATGCAGGACTGGCACTCCGGGTCTG GCAGTCAGATTTTCTTGAAAATCCGGAAGTGCTGACCAGCGTTTCCCGGC TGATCGCGCAGGAGAACCGGGCAGCTTTTCCAGATTTCGCACGTTTTGTC TCAGGGACGAAGTCATTACTGGAGTTGTTACGCAAAACGCCCGACCCTTC AAATCAAGCTGACCTGTCGGCTCTGCTGGAGCACGAAGACAGCGAGCTCT GGCGGTTCTGTCTATTCCTCACGCTGGAAACGGCCCGGCTTCGTCAAGAT CGACAACTGTTGCAGCTGGCTTCAAAGAAACTGCTGGAACAGAGCGGGCG ACTTTATGATCCCCAGCAAGAAGAGGCTTTTAATATGATCAACGATCTGA ACTGCCTCTACTATTCCGCATTTCGTGCGGCTCAACAGGTCAATAATCAA AAACTCCAGCACGAGCTCCTGTCTCGAATGGTCCTGCTCTATCCCCGGGT TGGTGAGTCTTTCTTTAATATTCTGGATGAGCGACACATTCAGAAGCAGG ATTGGTTGTATCTGTTCCACAAGCGTGATCCTGCTTCGGACTGGCTTTGG GAATATACCGTAATGCTGCAGGAAGAAGTGGAAGAATTTGGTTCCGGAAT TTATGAAGCCGGTGTGCTCTGGGCGACGACCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99800:2..685-

>mRNA_M-pyrifera_M_contig99800.22950.1 ID=mRNA_M-pyrifera_M_contig99800.22950.1|Name=mRNA_M-pyrifera_M_contig99800.22950.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig99800:2..685- (Macrocystis pyrifera P11B4 male)
GGAATCGAACTGTTGGCCAGGCAAGATGCAGGACTGGCACTCCGGGTCTG
GCAGTCAGATTTTCTTGAAAATCCGGAAGTGCTGACCAGCGTTTCCCGGC
TGATCGCGCAGGAGAACCGGGCAGCTTTTCCAGATTTCGCACGTTTTGTC
TCAGGGACGAAGTCATTACTGGAGTTGTTACGCAAAACGCCCGACCCTTC
AAATCAAGCTGACCTGTCGGCTCTGCTGGAGCACGAAGACAGCGAGCTCT
GGCGGTTCTGTCTATTCCTCACGCTGGAAACGGCCCGGCTTCGTCAAGAT
CGACAACTGTTGCAGCTGGCTTCAAAGAAACTGCTGGAACAGAGCGGGCG
ACTTTATGATCCCCAGCAAGAAGAGGCTTTTAATATGATCAACGATCTGA
ACTGCCTCTACTATTCCGCATTTCGTGCGGCTCAACAGGTCAATAATCAA
AAACTCCAGCACGAGCTCCTGTCTCGAATGGTCCTGCTCTATCCCCGGGT
TGGTGAGTCTTTCTTTAATATTCTGGATGAGCGACACATTCAGAAGCAGG
ATTGGTTGTATCTGTTCCACAAGCGTGATCCTGCTTCGGACTGGCTTTGG
GAATATACCGTAATGCTGCAGGAAGAAGTGGAAGAATTTGGTTCCGGAAT
TTATGAAGCCGGTGTGCTCTGGGCGACGACCGGCGGAATCGAACTGTTGG
CCAGGCAAGATGCAGGACTGGCACTCCGGGTCTGGCAGTCAGATTTTCTT
GAAAATCCGGAAGTGCTGACCAGCGTTTCCCGGCTGATCGCGCAGGAGAA
CCGGGCAGCTTTTCCAGATTTCGCACGTTTTGTCTCAGGGACGAAGTCAT
TACTGGAGTTGTTACGCAAAACGCCCGACCCTTCAAATCAAGCTGACCTG
TCGGCTCTGCTGGAGCACGAAGACAGCGAGCTCTGGCGGTTCTGTCTATT
CCTCACGCTGGAAACGGCCCGGCTTCGTCAAGATCGACAACTGTTGCAGC
TGGCTTCAAAGAAACTGCTGGAACAGAGCGGGCGACTTTATGATCCCCAG
CAAGAAGAGGCTTTTAATATGATCAACGATCTGAACTGCCTCTACTATTC
CGCATTTCGTGCGGCTCAACAGGTCAATAATCAAAAACTCCAGCACGAGC
TCCTGTCTCGAATGGTCCTGCTCTATCCCCGGGTTGGTGAGTCTTTCTTT
AATATTCTGGATGAGCGACACATTCAGAAGCAGGATTGGTTGTATCTGTT
CCACAAGCGTGATCCTGCTTCGGACTGGCTTTGGGAATATACCGTAATGC
TGCAGGAAGAAGTGGAAGAATTTGGTTCCGGAATTTATGAAGCCGGTGTG
CTCTGGGCGACGACCGGC
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