mRNA_M-pyrifera_M_contig9980.22948.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9980.22948.1
Unique NamemRNA_M-pyrifera_M_contig9980.22948.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9980.22948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9980contigM-pyrifera_M_contig9980:1392..1715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.2228317-CDS-M-pyrifera_M_contig9980:1391..17151622816915.2228317-CDS-M-pyrifera_M_contig9980:1391..1715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9980 1392..1715 +
1692278253.0781722-CDS-M-pyrifera_M_contig9980:1391..17151692278253.0781722-CDS-M-pyrifera_M_contig9980:1391..1715Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9980 1392..1715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9980.22948.1prot_M-pyrifera_M_contig9980.22948.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9980 1392..1715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9980.22948.1

>prot_M-pyrifera_M_contig9980.22948.1 ID=prot_M-pyrifera_M_contig9980.22948.1|Name=mRNA_M-pyrifera_M_contig9980.22948.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
AFLTCFSFFPIMLSIFLGPSVSVLFVSSPTYQLDIGLFVSCCSLLIVTLF
LTRCLPSGLSWASSCRSNSWTNHTTDRTSKQQPCPRDSACASSASVPHFS
SYCFLFPS
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mRNA from alignment at M-pyrifera_M_contig9980:1392..1715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9980.22948.1 ID=mRNA_M-pyrifera_M_contig9980.22948.1|Name=mRNA_M-pyrifera_M_contig9980.22948.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig9980:1392..1715+ (Macrocystis pyrifera P11B4 male)
GCATTCCTTACCTGTTTTTCCTTTTTTCCGATTATGTTGTCAATTTTCCT
TGGTCCGTCTGTCTCTGTCCTCTTTGTGTCGTCCCCGACCTACCAACTGG
ACATAGGGCTGTTCGTTTCGTGTTGTTCGCTCCTTATCGTTACCCTCTTC
TTGACGCGTTGCCTTCCGTCTGGTCTTTCTTGGGCGTCCTCATGTAGGTC
CAACAGCTGGACAAACCATACGACTGATCGTACCAGCAAACAGCAACCTT
GTCCTCGTGACTCAGCCTGCGCCTCGAGCGCAAGTGTGCCTCATTTCTCT
TCCTACTGTTTTCTTTTTCCTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9980:1392..1715+

>mRNA_M-pyrifera_M_contig9980.22948.1 ID=mRNA_M-pyrifera_M_contig9980.22948.1|Name=mRNA_M-pyrifera_M_contig9980.22948.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig9980:1392..1715+ (Macrocystis pyrifera P11B4 male)
GCATTCCTTACCTGTTTTTCCTTTTTTCCGATTATGTTGTCAATTTTCCT
TGGTCCGTCTGTCTCTGTCCTCTTTGTGTCGTCCCCGACCTACCAACTGG
ACATAGGGCTGTTCGTTTCGTGTTGTTCGCTCCTTATCGTTACCCTCTTC
TTGACGCGTTGCCTTCCGTCTGGTCTTTCTTGGGCGTCCTCATGTAGGTC
CAACAGCTGGACAAACCATACGACTGATCGTACCAGCAAACAGCAACCTT
GTCCTCGTGACTCAGCCTGCGCCTCGAGCGCAAGTGTGCCTCATTTCTCT
TCCTACTGTTTTCTTTTTCCTTCCGCATTCCTTACCTGTTTTTCCTTTTT
TCCGATTATGTTGTCAATTTTCCTTGGTCCGTCTGTCTCTGTCCTCTTTG
TGTCGTCCCCGACCTACCAACTGGACATAGGGCTGTTCGTTTCGTGTTGT
TCGCTCCTTATCGTTACCCTCTTCTTGACGCGTTGCCTTCCGTCTGGTCT
TTCTTGGGCGTCCTCATGTAGGTCCAACAGCTGGACAAACCATACGACTG
ATCGTACCAGCAAACAGCAACCTTGTCCTCGTGACTCAGCCTGCGCCTCG
AGCGCAAGTGTGCCTCATTTCTCTTCCTACTGTTTTCTTTTTCCTTCC
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