mRNA_M-pyrifera_M_contig99795.22945.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99795.22945.1
Unique NamemRNA_M-pyrifera_M_contig99795.22945.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A2P5BZQ0_PARAD (GPCR kinase n=3 Tax=rosids TaxID=71275 RepID=A0A2P5BZQ0_PARAD)

HSP 1 Score: 156 bits (395), Expect = 8.280e-46
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MSRARVYADVNV RP EYWDYESL+V WGDQ++YEVVRK+GRGKYSEVFEGINV N +KC+IKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSRARVYADVNVHRPREYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVTNNEKCIIKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A7J0GH90_9ERIC (Casein kinase II, alpha chain 2 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GH90_9ERIC)

HSP 1 Score: 150 bits (380), Expect = 1.990e-45
Identity = 69/86 (80.23%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MS++RVYADVNV RP +YWDYESL+V WGDQ++YEVVRK+GRGKYSEVFEGINV N ++C+IKILKPVKKKKIKREIKILQN+ GG
Sbjct:    1 MSQSRVYADVNVHRPRDYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVTNNERCIIKILKPVKKKKIKREIKILQNICGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A7S2Y1K0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1K0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 3.360e-45
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MSRARVYAD+NV RP EYWDYESL V+WGDQE+YEV+RKIGRGKYSEVFEG+NVVN  KCVIKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSRARVYADINVHRPREYWDYESLVVNWGDQEDYEVIRKIGRGKYSEVFEGVNVVNNTKCVIKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A067GPI4_CITSI (Protein kinase domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A067GPI4_CITSI)

HSP 1 Score: 156 bits (395), Expect = 3.490e-45
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MSRARVYADVNV RP +YWDYESL+V WGDQE+YEVVRK+GRGKYSEVFEGINV N +KC+IKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSRARVYADVNVHRPRDYWDYESLTVQWGDQEDYEVVRKVGRGKYSEVFEGINVTNNEKCIIKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: V4T5Z5_CITCL (Protein kinase domain-containing protein n=6 Tax=Sapindales TaxID=41937 RepID=V4T5Z5_CITCL)

HSP 1 Score: 156 bits (395), Expect = 3.580e-45
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MSRARVYADVNV RP +YWDYESL+V WGDQE+YEVVRK+GRGKYSEVFEGINV N +KC+IKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSRARVYADVNVHRPRDYWDYESLTVQWGDQEDYEVVRKVGRGKYSEVFEGINVTNNEKCIIKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A7C8ZR38_OPUST (Protein kinase domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZR38_OPUST)

HSP 1 Score: 151 bits (381), Expect = 5.770e-45
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MS+ARVYADVNV RP EYWDYESL+V WGDQ++YEVVRKIGRGKYSEVFEGINV N ++CVIKILKPVKKKKIKREIKILQ++ GG
Sbjct:    7 MSKARVYADVNVHRPREYWDYESLTVQWGDQDDYEVVRKIGRGKYSEVFEGINVNNNERCVIKILKPVKKKKIKREIKILQSICGG 92
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: UPI000CE1C5AC (LOW QUALITY PROTEIN: casein kinase II subunit alpha-2-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1C5AC)

HSP 1 Score: 155 bits (392), Expect = 6.680e-45
Identity = 74/86 (86.05%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MSRARVYAD+NV RP +YWDYESLSV WG+Q++YEVVRKIGRGKYSEVFEGINV N +KCVIKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSRARVYADINVHRPRDYWDYESLSVQWGEQDDYEVVRKIGRGKYSEVFEGINVTNNEKCVIKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A5ARH3_VITVI (Protein kinase domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ARH3_VITVI)

HSP 1 Score: 151 bits (382), Expect = 8.330e-45
Identity = 70/86 (81.40%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MS ARVYADVN+ RP +YWDYESL+V WGDQ++YEVVRK+GRGKYSEVFEGINV N ++CV+KILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSSARVYADVNIHRPRDYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVTNNERCVVKILKPVKKKKIKREIKILQNLCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A6U0SL29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0SL29_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.090e-44
Identity = 72/86 (83.72%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MS+ARVYADVNV RP +YWDYE+L+V+WGDQE+YEV+RKIGRGKYSEVFEG NVVN  KCVIKILKPVKKKKIKREIKILQN+ GG
Sbjct:    1 MSKARVYADVNVHRPRDYWDYEALTVNWGDQEDYEVIRKIGRGKYSEVFEGANVVNNTKCVIKILKPVKKKKIKREIKILQNMCGG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Match: A0A059AZY3_EUCGR (Protein kinase domain-containing protein (Fragment) n=4 Tax=Myrtoideae TaxID=1699513 RepID=A0A059AZY3_EUCGR)

HSP 1 Score: 149 bits (376), Expect = 1.140e-44
Identity = 72/86 (83.72%), Postives = 79/86 (91.86%), Query Frame = 1 
Query:    1 MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFEGINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG 258
            MS+ARVYADVNV RP EYWDYESL+V WG+Q++YEVVRK+GRGKYSEVFEGINV   +KCVIKILKPVKKKKIKREIKILQNL GG
Sbjct:    1 MSKARVYADVNVIRPKEYWDYESLAVQWGNQDDYEVVRKVGRGKYSEVFEGINVNTNEKCVIKILKPVKKKKIKREIKILQNLCGG 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99795.22945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P5BZQ0_PARAD8.280e-4686.05GPCR kinase n=3 Tax=rosids TaxID=71275 RepID=A0A2P... [more]
A0A7J0GH90_9ERIC1.990e-4580.23Casein kinase II, alpha chain 2 n=1 Tax=Actinidia ... [more]
A0A7S2Y1K0_9STRA3.360e-4587.21Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A067GPI4_CITSI3.490e-4586.05Protein kinase domain-containing protein n=2 Tax=r... [more]
V4T5Z5_CITCL3.580e-4586.05Protein kinase domain-containing protein n=6 Tax=S... [more]
A0A7C8ZR38_OPUST5.770e-4583.72Protein kinase domain-containing protein (Fragment... [more]
UPI000CE1C5AC6.680e-4586.05LOW QUALITY PROTEIN: casein kinase II subunit alph... [more]
A5ARH3_VITVI8.330e-4581.40Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A6U0SL29_9STRA1.090e-4483.72Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A059AZY3_EUCGR1.140e-4483.72Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99795contigM-pyrifera_M_contig99795:428..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score157.5
Seed ortholog evalue2.7e-36
Seed eggNOG ortholog2711.XP_006472281.1
KEGG koko:K03097
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0008150,GO:0031974,GO:0031981,GO:0042752,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050789,GO:0065007,GO:0070013
EggNOG free text desc.belongs to the protein kinase superfamily
EggNOG OGs37QV3@33090,3GATW@35493,KOG0668@1,KOG0668@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons1
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.1257217-CDS-M-pyrifera_M_contig99795:427..6851622816915.1257217-CDS-M-pyrifera_M_contig99795:427..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99795 428..685 +
1692278253.040486-CDS-M-pyrifera_M_contig99795:427..6851692278253.040486-CDS-M-pyrifera_M_contig99795:427..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99795 428..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99795.22945.1prot_M-pyrifera_M_contig99795.22945.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99795 428..685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99795.22945.1

>prot_M-pyrifera_M_contig99795.22945.1 ID=prot_M-pyrifera_M_contig99795.22945.1|Name=mRNA_M-pyrifera_M_contig99795.22945.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
MSRARVYADVNVRRPAEYWDYESLSVSWGDQENYEVVRKIGRGKYSEVFE
GINVVNRQKCVIKILKPVKKKKIKREIKILQNLAGG
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mRNA from alignment at M-pyrifera_M_contig99795:428..685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99795.22945.1 ID=mRNA_M-pyrifera_M_contig99795.22945.1|Name=mRNA_M-pyrifera_M_contig99795.22945.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig99795:428..685+ (Macrocystis pyrifera P11B4 male)
ATGAGCCGTGCTCGAGTGTATGCGGACGTGAACGTGCGCCGGCCTGCCGA
GTACTGGGACTATGAGAGTTTGAGCGTGTCTTGGGGGGACCAGGAGAACT
ACGAGGTGGTTCGCAAGATCGGGCGCGGCAAGTACAGCGAGGTGTTCGAG
GGGATCAACGTGGTGAACCGGCAAAAGTGCGTGATCAAGATCCTCAAGCC
GGTGAAGAAGAAGAAGATCAAGCGCGAGATCAAGATCCTGCAGAACCTGG
CGGGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99795:428..685+

>mRNA_M-pyrifera_M_contig99795.22945.1 ID=mRNA_M-pyrifera_M_contig99795.22945.1|Name=mRNA_M-pyrifera_M_contig99795.22945.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig99795:428..685+ (Macrocystis pyrifera P11B4 male)
ATGAGCCGTGCTCGAGTGTATGCGGACGTGAACGTGCGCCGGCCTGCCGA
GTACTGGGACTATGAGAGTTTGAGCGTGTCTTGGGGGGACCAGGAGAACT
ACGAGGTGGTTCGCAAGATCGGGCGCGGCAAGTACAGCGAGGTGTTCGAG
GGGATCAACGTGGTGAACCGGCAAAAGTGCGTGATCAAGATCCTCAAGCC
GGTGAAGAAGAAGAAGATCAAGCGCGAGATCAAGATCCTGCAGAACCTGG
CGGGAGGGATGAGCCGTGCTCGAGTGTATGCGGACGTGAACGTGCGCCGG
CCTGCCGAGTACTGGGACTATGAGAGTTTGAGCGTGTCTTGGGGGGACCA
GGAGAACTACGAGGTGGTTCGCAAGATCGGGCGCGGCAAGTACAGCGAGG
TGTTCGAGGGGATCAACGTGGTGAACCGGCAAAAGTGCGTGATCAAGATC
CTCAAGCCGGTGAAGAAGAAGAAGATCAAGCGCGAGATCAAGATCCTGCA
GAACCTGGCGGGAGGG
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