mRNA_M-pyrifera_M_contig99788.22943.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99788.22943.1
Unique NamemRNA_M-pyrifera_M_contig99788.22943.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99788.22943.1 vs. uniprot
Match: A0A517Q5G0_9PLAN (SAF domain-containing protein n=9 Tax=Gimesia TaxID=1649453 RepID=A0A517Q5G0_9PLAN)

HSP 1 Score: 236 bits (601), Expect = 1.130e-74
Identity = 133/152 (87.50%), Postives = 143/152 (94.08%), Query Frame = 1 
Query:    1 EGAILKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLQDDEETQGDVKEDKQPVVKQSQENTKSAKEFLDQQQEPQMMTSAEVEVEPMEEEKKMWQIEIYSGEEKIVQEVELLEEELSDQQAALKNLWDSFTKRQKQKIN 456
            EGA+LKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYL D EETQGDVK+D+QPV ++ +E+ KSAK FLD+QQEPQMMTSAE  VEP+EEEKKMWQIEI+SGEEKIVQEVELLEEEL DQQAALKNLWDSFTKRQKQKIN
Sbjct:  211 EGAMLKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLDDGEETQGDVKQDQQPVAEKEKES-KSAKAFLDEQQEPQMMTSAEANVEPLEEEKKMWQIEIFSGEEKIVQEVELLEEELDDQQAALKNLWDSFTKRQKQKIN 361
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BLAST of mRNA_M-pyrifera_M_contig99788.22943.1 vs. uniprot
Match: A0A517V808_9PLAN (SAF domain-containing protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V808_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 5.460e-59
Identity = 111/153 (72.55%), Postives = 131/153 (85.62%), Query Frame = 1 
Query:    1 EGAILKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLQDDE-ETQGDVKEDKQPVVKQSQENTKSAKEFLDQQQEPQMMTSAEVEVEPMEEEKKMWQIEIYSGEEKIVQEVELLEEELSDQQAALKNLWDSFTKRQKQKIN 456
            EGA+LKLAEKKGEVHLALR+QSD +D+EDVQFDD ELAEVFSI+GSEYL+D E  T+GDVK+     V Q +    SAK+FLD++QEPQ MTSAE +VEP+EE KKMWQIEIYSGEEKIVQEVE+LEEE+ DQ+AALK+LW+ FT +QKQKIN
Sbjct:  197 EGAMLKLAEKKGEVHLALRAQSDSTDSEDVQFDDDELAEVFSIEGSEYLKDGEVSTRGDVKDKNDKEVAQKETEPGSAKQFLDEEQEPQQMTSAEADVEPLEEPKKMWQIEIYSGEEKIVQEVEILEEEIEDQKAALKDLWEVFTTKQKQKIN 349
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BLAST of mRNA_M-pyrifera_M_contig99788.22943.1 vs. uniprot
Match: A0A518ICF9_9PLAN (SAF domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518ICF9_9PLAN)

HSP 1 Score: 174 bits (441), Expect = 9.600e-51
Identity = 106/154 (68.83%), Postives = 130/154 (84.42%), Query Frame = 1 
Query:    1 EGAILKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLQDDEE-TQGDVKEDKQPVVKQSQENTKSAKEFLDQQQEPQMMTSAEVEVEPMEEEKKMWQIEIYSGEEKIVQEVELLEEELSDQQAALKNLWDSFT-KRQKQKIN 456
            EGAILKLAEKKGEVHLALR+ SDDSDTEDVQFDD ELAEVFSI+GSEYL +D++ ++GDVK+DK   + Q  +   SAK+FLD++Q PQ MTS EVE E +EE K MWQ+E+Y+GEEKIVQEVEL+EEEL DQ+ ALK+LW+ FT K++K+KIN
Sbjct:  197 EGAILKLAEKKGEVHLALRAASDDSDTEDVQFDDDELAEVFSIEGSEYLDEDKDNSEGDVKQDKPERLAQKDKGG-SAKKFLDEEQGPQEMTSTEVEPE-LEEVKPMWQVEVYAGEEKIVQEVELIEEELEDQKEALKDLWEVFTNKKEKEKIN 348
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BLAST of mRNA_M-pyrifera_M_contig99788.22943.1 vs. uniprot
Match: A0A517X1F0_9PLAN (SAF domain-containing protein n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1F0_9PLAN)

HSP 1 Score: 166 bits (421), Expect = 8.170e-48
Identity = 98/154 (63.64%), Postives = 123/154 (79.87%), Query Frame = 1 
Query:    1 EGAILKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLQDDEETQGDV-KEDKQPVVKQSQENTKSAKEFLDQQQEPQMMTSAEVEVEP-MEEEKKMWQIEIYSGEEKIVQEVELLEEELSDQQAALKNLWDSFTKRQKQKIN 456
            EGAILK+AE+KGEVHLALR+QSD SDTED+QF++ +LAEVFSI+G EY  D  ET+GD  +ED    + Q  + T SAK+FLD++Q+PQ MTS   EVE  +EE KKMWQ+EI+SGE+K +QEVELLEEEL D+ AALK LW+ FTK+Q +KIN
Sbjct:  190 EGAILKMAERKGEVHLALRAQSDTSDTEDIQFNEDDLAEVFSIEGGEYT-DPNETKGDTNEEDSSKELAQKSDKTTSAKQFLDEEQQPQEMTSVGAEVEAELEEAKKMWQVEIFSGEQKTIQEVELLEEELEDKTAALKGLWEVFTKKQNEKIN 342
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99788.22943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A517Q5G0_9PLAN1.130e-7487.50SAF domain-containing protein n=9 Tax=Gimesia TaxI... [more]
A0A517V808_9PLAN5.460e-5972.55SAF domain-containing protein n=7 Tax=Planctomycet... [more]
A0A518ICF9_9PLAN9.600e-5168.83SAF domain-containing protein n=2 Tax=Gimesia TaxI... [more]
A0A517X1F0_9PLAN8.170e-4863.64SAF domain-containing protein n=3 Tax=Gimesia aqua... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99788contigM-pyrifera_M_contig99788:2..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score161.8
Seed ortholog evalue2.6e-37
Seed eggNOG ortholog344747.PM8797T_30397
Preferred namecpaB
KEGG koko:K02279
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pilus assembly protein CpaB
EggNOG OGs2IZQE@203682,COG3745@1,COG3745@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02035,ko02044
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.0552328-CDS-M-pyrifera_M_contig99788:1..4601622816915.0552328-CDS-M-pyrifera_M_contig99788:1..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99788 2..460 +
1692278253.0096998-CDS-M-pyrifera_M_contig99788:1..4601692278253.0096998-CDS-M-pyrifera_M_contig99788:1..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99788 2..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99788.22943.1prot_M-pyrifera_M_contig99788.22943.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99788 2..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99788.22943.1

>prot_M-pyrifera_M_contig99788.22943.1 ID=prot_M-pyrifera_M_contig99788.22943.1|Name=mRNA_M-pyrifera_M_contig99788.22943.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
EGAILKLAEKKGEVHLALRSQSDDSDTEDVQFDDQELAEVFSIDGSEYLQ
DDEETQGDVKEDKQPVVKQSQENTKSAKEFLDQQQEPQMMTSAEVEVEPM
EEEKKMWQIEIYSGEEKIVQEVELLEEELSDQQAALKNLWDSFTKRQKQK
IN*
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mRNA from alignment at M-pyrifera_M_contig99788:2..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99788.22943.1 ID=mRNA_M-pyrifera_M_contig99788.22943.1|Name=mRNA_M-pyrifera_M_contig99788.22943.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig99788:2..460+ (Macrocystis pyrifera P11B4 male)
GAAGGAGCGATTCTGAAGCTGGCTGAGAAAAAAGGAGAAGTTCACCTCGC
CCTGCGGTCGCAATCAGATGATTCTGACACCGAGGACGTTCAGTTTGACG
ATCAGGAACTGGCAGAAGTCTTTTCAATTGATGGCAGTGAATATCTGCAG
GATGATGAAGAGACACAGGGCGATGTAAAAGAAGACAAGCAGCCTGTTGT
TAAGCAGTCACAGGAAAATACGAAGTCGGCAAAAGAGTTTCTCGATCAAC
AGCAAGAGCCTCAGATGATGACCTCTGCTGAAGTCGAAGTCGAGCCGATG
GAAGAAGAGAAGAAAATGTGGCAGATTGAGATTTATTCAGGTGAAGAAAA
AATTGTTCAGGAAGTGGAACTGCTGGAAGAGGAACTGAGTGACCAGCAGG
CAGCTCTGAAAAATCTGTGGGACTCGTTTACGAAAAGACAGAAACAGAAA
ATCAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99788:2..460+

>mRNA_M-pyrifera_M_contig99788.22943.1 ID=mRNA_M-pyrifera_M_contig99788.22943.1|Name=mRNA_M-pyrifera_M_contig99788.22943.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig99788:2..460+ (Macrocystis pyrifera P11B4 male)
GAAGGAGCGATTCTGAAGCTGGCTGAGAAAAAAGGAGAAGTTCACCTCGC
CCTGCGGTCGCAATCAGATGATTCTGACACCGAGGACGTTCAGTTTGACG
ATCAGGAACTGGCAGAAGTCTTTTCAATTGATGGCAGTGAATATCTGCAG
GATGATGAAGAGACACAGGGCGATGTAAAAGAAGACAAGCAGCCTGTTGT
TAAGCAGTCACAGGAAAATACGAAGTCGGCAAAAGAGTTTCTCGATCAAC
AGCAAGAGCCTCAGATGATGACCTCTGCTGAAGTCGAAGTCGAGCCGATG
GAAGAAGAGAAGAAAATGTGGCAGATTGAGATTTATTCAGGTGAAGAAAA
AATTGTTCAGGAAGTGGAACTGCTGGAAGAGGAACTGAGTGACCAGCAGG
CAGCTCTGAAAAATCTGTGGGACTCGTTTACGAAAAGACAGAAACAGAAA
ATCAATTGAGAAGGAGCGATTCTGAAGCTGGCTGAGAAAAAAGGAGAAGT
TCACCTCGCCCTGCGGTCGCAATCAGATGATTCTGACACCGAGGACGTTC
AGTTTGACGATCAGGAACTGGCAGAAGTCTTTTCAATTGATGGCAGTGAA
TATCTGCAGGATGATGAAGAGACACAGGGCGATGTAAAAGAAGACAAGCA
GCCTGTTGTTAAGCAGTCACAGGAAAATACGAAGTCGGCAAAAGAGTTTC
TCGATCAACAGCAAGAGCCTCAGATGATGACCTCTGCTGAAGTCGAAGTC
GAGCCGATGGAAGAAGAGAAGAAAATGTGGCAGATTGAGATTTATTCAGG
TGAAGAAAAAATTGTTCAGGAAGTGGAACTGCTGGAAGAGGAACTGAGTG
ACCAGCAGGCAGCTCTGAAAAATCTGTGGGACTCGTTTACGAAAAGACAG
AAACAGAAAATCAATTGA
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