mRNA_M-pyrifera_M_contig99787.22942.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99787.22942.1
Unique NamemRNA_M-pyrifera_M_contig99787.22942.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A2E7KLW8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLW8_9PLAN)

HSP 1 Score: 245 bits (626), Expect = 1.960e-81
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:    1 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 360
            NGGRAVNEYVEFHVDGKALLHAISGS +DGVYTG IDLRDYARLCLLYE L+QEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE
Sbjct:   67 NGGRAVNEYVEFHVDGKALLHAISGSNRDGVYTGMIDLRDYARLCLLYEALIQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A5A8AZT9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A5A8AZT9_9PLAN)

HSP 1 Score: 244 bits (622), Expect = 1.150e-80
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:    1 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 360
            NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLR+YARLCLLYETLLQEAGTPEKFG EIPSSHPVI+ELTL FNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE
Sbjct:   78 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRNYARLCLLYETLLQEAGTPEKFGLEIPSSHPVISELTLMFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A6I6AF83_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AF83_9PLAN)

HSP 1 Score: 234 bits (597), Expect = 7.390e-77
Identity = 111/120 (92.50%), Postives = 115/120 (95.83%), Query Frame = 1 
Query:    1 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 360
            NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYE LL+EA TPEKFGHEIPSS PVI+ELTLTFN  KPNRVHRND+NFGDFKFWVFENVFENIESGVKWEQV+E
Sbjct:   78 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYEALLREAETPEKFGHEIPSSPPVISELTLTFNREKPNRVHRNDSNFGDFKFWVFENVFENIESGVKWEQVQE 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A518FVH2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FVH2_9PLAN)

HSP 1 Score: 218 bits (555), Expect = 1.830e-70
Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 360
            +GGRAVNEYVEFH +GKALLHAISGS +DGVYTGTIDLR+YARLCLLYE L+QEAGTPEKFGHEI SSHPVI+ELTLTF G++P+R+HRND NFGDFKFWVFENVF N+ES VKWE+VEE
Sbjct:   78 HGGRAVNEYVEFHANGKALLHAISGSNRDGVYTGTIDLRNYARLCLLYEALIQEAGTPEKFGHEIQSSHPVISELTLTFTGSQPDRIHRNDFNFGDFKFWVFENVFGNLESRVKWEKVEE 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A517XHR9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia maris TaxID=122 RepID=A0A517XHR9_9PLAN)

HSP 1 Score: 185 bits (470), Expect = 2.890e-57
Identity = 88/118 (74.58%), Postives = 99/118 (83.90%), Query Frame = 1 
Query:    4 GGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVE 357
            G  AV  Y+EFHVDGKALLHAISG  ++GVYTG I L D+ARLCLLYETL+ EAG P KFG+EI +SHPVI+ELTLTFN +K  RVHRND NFGDFKFWVFENVFENIES VKW++ E
Sbjct:  100 GFPAVIYYIEFHVDGKALLHAISGLDRNGVYTGKISLTDFARLCLLYETLITEAGDPAKFGYEIQASHPVISELTLTFNESKSARVHRNDLNFGDFKFWVFENVFENIESRVKWDKTE 217
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: A0A517RLN6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RLN6_9PLAN)

HSP 1 Score: 177 bits (450), Expect = 1.920e-54
Identity = 84/118 (71.19%), Postives = 95/118 (80.51%), Query Frame = 1 
Query:    4 GGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVE 357
            G  AV  Y+EF+ DG ALLHAISG++K+G+Y G I L DYARLCLLYETL+ EAG PEKFGH I SSHPV +ELTLTF   +P R HRND NFGDFKFWVFENVFENIES +KW +VE
Sbjct:   83 GFPAVIYYIEFNADGTALLHAISGTEKNGIYKGKIALTDYARLCLLYETLINEAGDPEKFGHVIQSSHPVTSELTLTFQKNQPIRKHRNDVNFGDFKFWVFENVFENIESKIKWVKVE 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Match: UPI00118D1345 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI00118D1345)

HSP 1 Score: 174 bits (440), Expect = 6.130e-53
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 1 
Query:   13 AVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYETLLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFWVFENVFENIESGVKWEQVEE 360
            A+  YVEFH +G A+LHAISG  ++GVY G I L D+ARLCLLYETL+ EAG P KFG+EI +SHPVI+ELTLTFN  KP RVHRN+ NFGDFKFWVFENVF NIES VKW + EE
Sbjct:   85 AIIYYVEFHANGDAVLHAISGLDRNGVYQGKISLTDFARLCLLYETLIAEAGDPAKFGYEIQASHPVISELTLTFNENKPARVHRNNLNFGDFKFWVFENVFGNIESQVKWVKAEE 200
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99787.22942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2E7KLW8_9PLAN1.960e-8195.83Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A5A8AZT9_9PLAN1.150e-8096.67Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A6I6AF83_9PLAN7.390e-7792.50Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A518FVH2_9PLAN1.830e-7083.33Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A517XHR9_9PLAN2.890e-5774.58Uncharacterized protein n=2 Tax=Gimesia maris TaxI... [more]
A0A517RLN6_9PLAN1.920e-5471.19Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
UPI00118D13456.130e-5370.69hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99787contigM-pyrifera_M_contig99787:1..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816915.0219505-CDS-M-pyrifera_M_contig99787:0..3631622816915.0219505-CDS-M-pyrifera_M_contig99787:0..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99787 1..363 +
1692278252.9946864-CDS-M-pyrifera_M_contig99787:0..3631692278252.9946864-CDS-M-pyrifera_M_contig99787:0..363Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99787 1..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99787.22942.1prot_M-pyrifera_M_contig99787.22942.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99787 1..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99787.22942.1

>prot_M-pyrifera_M_contig99787.22942.1 ID=prot_M-pyrifera_M_contig99787.22942.1|Name=mRNA_M-pyrifera_M_contig99787.22942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
NGGRAVNEYVEFHVDGKALLHAISGSKKDGVYTGTIDLRDYARLCLLYET
LLQEAGTPEKFGHEIPSSHPVIAELTLTFNGTKPNRVHRNDANFGDFKFW
VFENVFENIESGVKWEQVEE*
back to top

mRNA from alignment at M-pyrifera_M_contig99787:1..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99787.22942.1 ID=mRNA_M-pyrifera_M_contig99787.22942.1|Name=mRNA_M-pyrifera_M_contig99787.22942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig99787:1..363+ (Macrocystis pyrifera P11B4 male)
AACGGCGGTCGGGCTGTTAACGAGTACGTTGAATTTCATGTTGATGGGAA
AGCGCTGCTGCACGCGATTTCCGGTTCGAAGAAAGACGGCGTCTATACAG
GAACGATTGACCTGCGAGACTATGCCCGGCTCTGCCTGTTGTATGAAACG
CTGCTTCAGGAAGCGGGAACACCGGAGAAGTTCGGACACGAAATCCCGTC
TTCCCATCCCGTCATCGCTGAGCTGACACTGACGTTCAATGGAACGAAGC
CGAACAGAGTGCATCGCAACGATGCCAACTTCGGCGACTTCAAGTTCTGG
GTGTTTGAGAACGTGTTCGAGAATATCGAATCCGGGGTGAAGTGGGAGCA
GGTGGAAGAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99787:1..363+

>mRNA_M-pyrifera_M_contig99787.22942.1 ID=mRNA_M-pyrifera_M_contig99787.22942.1|Name=mRNA_M-pyrifera_M_contig99787.22942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig99787:1..363+ (Macrocystis pyrifera P11B4 male)
AACGGCGGTCGGGCTGTTAACGAGTACGTTGAATTTCATGTTGATGGGAA
AGCGCTGCTGCACGCGATTTCCGGTTCGAAGAAAGACGGCGTCTATACAG
GAACGATTGACCTGCGAGACTATGCCCGGCTCTGCCTGTTGTATGAAACG
CTGCTTCAGGAAGCGGGAACACCGGAGAAGTTCGGACACGAAATCCCGTC
TTCCCATCCCGTCATCGCTGAGCTGACACTGACGTTCAATGGAACGAAGC
CGAACAGAGTGCATCGCAACGATGCCAACTTCGGCGACTTCAAGTTCTGG
GTGTTTGAGAACGTGTTCGAGAATATCGAATCCGGGGTGAAGTGGGAGCA
GGTGGAAGAGTGAAACGGCGGTCGGGCTGTTAACGAGTACGTTGAATTTC
ATGTTGATGGGAAAGCGCTGCTGCACGCGATTTCCGGTTCGAAGAAAGAC
GGCGTCTATACAGGAACGATTGACCTGCGAGACTATGCCCGGCTCTGCCT
GTTGTATGAAACGCTGCTTCAGGAAGCGGGAACACCGGAGAAGTTCGGAC
ACGAAATCCCGTCTTCCCATCCCGTCATCGCTGAGCTGACACTGACGTTC
AATGGAACGAAGCCGAACAGAGTGCATCGCAACGATGCCAACTTCGGCGA
CTTCAAGTTCTGGGTGTTTGAGAACGTGTTCGAGAATATCGAATCCGGGG
TGAAGTGGGAGCAGGTGGAAGAGTGA
back to top