mRNA_M-pyrifera_M_contig99780.22940.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2D9CI68_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9CI68_9BACT) HSP 1 Score: 210 bits (535), Expect = 1.680e-62 Identity = 116/229 (50.66%), Postives = 148/229 (64.63%), Query Frame = 1 Query: 1 DELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGA-IPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 ++L +L+ G +G+ V D +VVL+G PNAGKS + NALLG R +VS+RAGTT GAV L DLAGLGD AIDAID AQ+ AR ID+ADA++WCDP+GRFDE + P+VRVRTKSDLP Q + + VCA D + + VLRRAIADA +G+GVGVFVPRHRRA+ +AI I A+ +D S++ PEL+A GL E+L Sbjct: 194 EQLREQLIEQVGGASGDRVVRDAPSVVLIGRPNAGKSALFNALLGTTRAVVSDRAGTTRDALVEPLDLSQDVPGAGAVELVDLAGLGDRAIDAIDEQAQQRARGFIDEADAVLWCDPSGRFDERLFETRDGVPMVRVRTKSDLPAQSPIDSSGVSVCAFDASTLGVLRRAIADATSRASGSGVGVFVPRHRRALNMAIESIDRAMQSIDTRTRSLQHPELIALGLRESL 422
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2A4RNI2_9BACT (tRNA modification GTPase MnmE n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RNI2_9BACT) HSP 1 Score: 201 bits (512), Expect = 4.900e-59 Identity = 118/226 (52.21%), Postives = 143/226 (63.27%), Query Frame = 1 Query: 19 LVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLP---GQHT-AQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 +V G +G+ V DL VV VG PNAGKS++ NALLG QR VS++AGTT G+V L DLAG+G+ AID+IDA AQ A E I++A I+WCDP G FD SI LP P+VRVRTKSDLP G T A+ VCA+DGT + L+RAIADA RTG+GVGVFVPRHRRA+ + GI A+ +D IE PELVA GL +AL Sbjct: 201 VVAQIGTASGDRVHSDLPKVVFVGKPNAGKSSLFNALLGVQRATVSDQAGTTRDVIIEQMDLAKHVPGAGSVELVDLAGVGEAAIDSIDASAQTRALEVIEEAGVILWCDPAGVFDAESIALPTATPIVRVRTKSDLPLSTGLRTKTNNALAVCALDGTALGSLQRAIADAVSRRTGSGVGVFVPRHRRALIDSKDGIDAAIGHVDSTKRVIEEPELVAIGLRDAL 426
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A3M2CEY8_9BACT (tRNA modification GTPase MnmE n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CEY8_9BACT) HSP 1 Score: 188 bits (478), Expect = 7.170e-54 Identity = 113/237 (47.68%), Postives = 141/237 (59.49%), Query Frame = 1 Query: 7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHA---IDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGA--------IPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 ++++LV GA AG D VVLVG PNAGKST+ NALL R +VS+R GTT G V L DLAGL D A ID ID AQ LAR+RI +ADA++WCDPTG FD + LP + P +RVRTKSDLPG +G IPVCA+DGT ++ LRRAIAD A TG + +PRHRRAIA + +H A +D EA ++ PEL+A+ L A+ Sbjct: 205 VQADLVAIIGAAAGAAAERDTPEVVLVGRPNAGKSTLFNALLARPRAIVSDRPGTTRDALAEPLDLSADAPGAGVVTLVDLAGLTDQAEGGIDEIDTAAQHLARQRIARADALLWCDPTGAFDPLAFPLP-NLPTIRVRTKSDLPGSPDRKGVDGDRSSPHIPVCALDGTNLATLRRAIADTAT-NTGPAGAIALPRHRRAIARTLAHLHQARDAVDPEAHALAEPELIAAALRAAI 439
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2E2NBJ4_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NBJ4_9BACT) HSP 1 Score: 157 bits (396), Expect = 5.390e-42 Identity = 92/203 (45.32%), Postives = 118/203 (58.13%), Query Frame = 1 Query: 76 VVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 VVLVG PNAGKS + NALLG +R +VS+R GTT G+V L DLAG+GD A+D +DA+AQ +ARER+ AD ++ CDP GRF E L A VVRVRTK+D+ T A+ VCAIDG ++ LRRAIADAA G VPRH + A+ ++ A++ ++ PEL A L AL Sbjct: 220 VVLVGEPNAGKSALFNALLGRRRAVVSDRPGTTRDALEESLDLTTEAPGAGSVTLVDLAGIGDRAVDPLDAEAQEIARERVRGADVVLHCDPNGRFSE----LDTRATVVRVRTKADIATGETESEALAVCAIDGWRLAPLRRAIADAAQTVRGAARSTVVPRHAAELRAALHAMNNAISTFSGVERTLRDPELTAGELRTAL 418
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A4P5X401_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X401_9BACT) HSP 1 Score: 149 bits (377), Expect = 5.440e-39 Identity = 93/248 (37.50%), Postives = 130/248 (52.42%), Query Frame = 1 Query: 7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAI----------DAIDADAQRLARERIDKADAIIWCDPTGRFDESSI--KLPADA-----PVVRVRT-----KSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 L +++V H G +G+ L V LVG PNAGKST+ NALL +QR + S RAGTT G++ L DL GL HA A D AQ AR + AD +IWCDPTGRFD ++ +L D P++RVRT +++ +Q + VCA+DG +S LRRA+AD AC G+ +PR+RR+++ A I A+T++ A ++ PE +A L AL Sbjct: 205 LHTQIVDHMGGASGQTASSALPRVALVGLPNAGKSTLFNALLRQQRAIASPRAGTTRDIIEEELDLSRDVLGAGSITLQDLPGLS-HATTTNTLDASVQSAADLAAQHAARAAVQSADVLIWCDPTGRFDTLALAGQLHLDTWHAAQPIIRVRTFGDHVRTEAASDANSQAILTVCAVDGWNLSSLRRAVADQACVGKAAGIAALLPRYRRSLSEAASAISYAITDVPANATRLDEPETIAESLRLAL 451
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: UPI001AC8295B (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC8295B) HSP 1 Score: 147 bits (371), Expect = 3.080e-38 Identity = 95/236 (40.25%), Postives = 120/236 (50.85%), Query Frame = 1 Query: 7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQ----------HTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 L + H GA AG VVLVG PNAGKST+ NALLG +R + AGTT G V L DLAGL D D DA AQ AR I +AD ++WCDPT RFDE + P A V+R+RT +D P A+PVCA+DG ++ L+RAIA+ AC+ + +PRHR A+ AI I +A T +D + PE +A L AL Sbjct: 200 LRQAIASHLGARAGAEATVAQPLVVLVGRPNAGKSTLFNALLGRRRAVAGPIAGTTRDALVEPLDLSPSAPGAGTVQLADLAGLDDMQSDQPDALAQAAARHTIARADLLLWCDPTSRFDERDLP-PTSAEVLRIRTFADRPADPHPRVPQSSFRVQHSALPVCALDGWHLADLKRAIAEHACSSNQAPLAALLPRHRAAMHDAIGAIDLAATLIDTRDTGLRRPEELAQTLRAAL 434
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A7C3Q253_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3Q253_9BACT) HSP 1 Score: 137 bits (346), Expect = 2.020e-35 Identity = 88/219 (40.18%), Postives = 112/219 (51.14%), Query Frame = 1 Query: 34 GAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADA--PVVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 GA G D V +VG PNAGKST+ NALL +R + S AGTT G + L DL GL I+ +QR AR+ ADA+IWCDP G FDE S+ A V+RVRT D P + + VCA+DG + LRRA+AD GV +PRHRRA+AVA + A +D +A ++ PE+VA L AL Sbjct: 111 GASGGREHTDGQPRVAIVGNPNAGKSTLFNALLERRRAVASPIAGTTRDVLSERLDLSRVAPGAGEIELQDLPGLDPRVGSVIEVQSQRAARDAAAHADALIWCDPDGNFDERSLADLGGAGKAVLRVRTFGDRPAEGLG-AHVEVCALDGWHLDTLRRALADVTGGSISEGVASLLPRHRRALAVARKSLESARRSIDPDAAALAAPEVVAGHLRHAL 328
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A3B1DYR3_9ZZZZ (GTPase and tRNA-U34 5-formylation enzyme TrmE n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DYR3_9ZZZZ) HSP 1 Score: 139 bits (350), Expect = 3.220e-35 Identity = 88/204 (43.14%), Postives = 115/204 (56.37%), Query Frame = 1 Query: 76 VVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPG-QHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684 VVLVG PNAGKST+ NALLG +R +V+E GTT +V L DL GL DA + +Q LA E I +ADA++ CDP+G F +P PV+RVRTK+D PG + + G + VCA+DG + V+RR IAD A G V + RH R I A+ + A +LD A +++ PELVA GL AL Sbjct: 235 VVLVGVPNAGKSTLFNALLGRRRSVVAEEVGTTRDVLLEVLHLAEVAGPGLSVQLADLPGL-----DATSS-SQALALEAIHRADAVVHCDPSGEFSTGLWAIPESTPVLRVRTKADQPGGREGSSGDVEVCALDGWHLGVVRRGIADIALRAPGGSCSVALTRHAREITHAVEQLAAAEAQLDPTARALDAPELVADGLRSAL 432
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: UPI00199F2E4B (50S ribosome-binding GTPase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI00199F2E4B) HSP 1 Score: 135 bits (340), Expect = 1.360e-33 Identity = 96/253 (37.94%), Postives = 129/253 (50.99%), Query Frame = 1 Query: 4 ELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDA--------IDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGAIP--------VCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADS----------IEMPELVASGLCEAL 684 +L L+ + G G R VVL GAPNAGKST+ NALLG R +VS AGTT V LTDLAG+ + A ID++AQ+ AR+ I +AD ++ CDP+GRF + + APV+R++TK+DLP H A+ P VCA+DG + LRRAIAD+A +G +PRH+R++ A+ I A+ L S I PEL+A L EAL Sbjct: 214 QLRESLMAYVGHVKGAESRSANPVVVLAGAPNAGKSTLFNALLGRHRAVVSRVAGTTRDVIVEDLDLSRDIPGGPVVKLTDLAGVDAALLRAAPHSTALHIDSEAQQRARQAIAEADVVVHCDPSGRFVDD-LPQHGKAPVIRLQTKADLPHVHQAKSPAPWAVAPSLAVCALDGWNLGPLRRAIADSASQDRASGSLSVLPRHQRSLTHAVASISEAIARLKAPVQSSSPGGPDHQAIMAPELIAGSLREAL 465
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A651EU60_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651EU60_9BACT) HSP 1 Score: 134 bits (338), Expect = 1.860e-33 Identity = 99/237 (41.77%), Postives = 128/237 (54.01%), Query Frame = 1 Query: 7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGL--GDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIK-LPADAP--VVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGV----GVFVPRHRRAIAVAIMGIHMALTELD--READSIEMPELVASGLCEAL 684 L+ E+V G G+ V + + LVGAPNAGKST+ NALLG +R +VSE+AGTT A+ L DLAGL G + AQ AR+ I ADAI+WCDP+G+FD++ + L A+ P V+RVRTK+DL + VCA+DG M L RA+ DAA G G V RHR A+ A + A+ ++ REA SIE LVAS L AL Sbjct: 205 LDVEMVSLLGPGSRATVDESPVRMALVGAPNAGKSTLFNALLGRERAIVSEQAGTTRDVIAEALPRDPMMPHAPAIELLDLAGLDAGSASDGRAHGAAQLAARDAIGAADAIVWCDPSGQFDDAKVAHLVAERPAMVLRVRTKADLVAPQDTGEMLAVCALDGWRMDALHRALCDAATTVRGYSTPLAPGSLVSRHRAALQEAQRCVREAMELINPAREAHSIE---LVASSLRLAL 438 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig99780.22940.1 >prot_M-pyrifera_M_contig99780.22940.1 ID=prot_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp DELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLback to top mRNA from alignment at M-pyrifera_M_contig99780:3..686+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig99780.22940.1 ID=mRNA_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig99780:3..686+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig99780:3..686+ >mRNA_M-pyrifera_M_contig99780.22940.1 ID=mRNA_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig99780:3..686+ (Macrocystis pyrifera P11B4 male)back to top |