mRNA_M-pyrifera_M_contig99780.22940.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99780.22940.1
Unique NamemRNA_M-pyrifera_M_contig99780.22940.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2D9CI68_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2D9CI68_9BACT)

HSP 1 Score: 210 bits (535), Expect = 1.680e-62
Identity = 116/229 (50.66%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    1 DELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGA-IPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            ++L  +L+   G  +G+ V  D  +VVL+G PNAGKS + NALLG  R +VS+RAGTT                 GAV L DLAGLGD AIDAID  AQ+ AR  ID+ADA++WCDP+GRFDE   +     P+VRVRTKSDLP Q     + + VCA D + + VLRRAIADA    +G+GVGVFVPRHRRA+ +AI  I  A+  +D    S++ PEL+A GL E+L
Sbjct:  194 EQLREQLIEQVGGASGDRVVRDAPSVVLIGRPNAGKSALFNALLGTTRAVVSDRAGTTRDALVEPLDLSQDVPGAGAVELVDLAGLGDRAIDAIDEQAQQRARGFIDEADAVLWCDPSGRFDERLFETRDGVPMVRVRTKSDLPAQSPIDSSGVSVCAFDASTLGVLRRAIADATSRASGSGVGVFVPRHRRALNMAIESIDRAMQSIDTRTRSLQHPELIALGLRESL 422          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2A4RNI2_9BACT (tRNA modification GTPase MnmE n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RNI2_9BACT)

HSP 1 Score: 201 bits (512), Expect = 4.900e-59
Identity = 118/226 (52.21%), Postives = 143/226 (63.27%), Query Frame = 1
Query:   19 LVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLP---GQHT-AQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            +V   G  +G+ V  DL  VV VG PNAGKS++ NALLG QR  VS++AGTT                 G+V L DLAG+G+ AID+IDA AQ  A E I++A  I+WCDP G FD  SI LP   P+VRVRTKSDLP   G  T    A+ VCA+DGT +  L+RAIADA   RTG+GVGVFVPRHRRA+  +  GI  A+  +D     IE PELVA GL +AL
Sbjct:  201 VVAQIGTASGDRVHSDLPKVVFVGKPNAGKSSLFNALLGVQRATVSDQAGTTRDVIIEQMDLAKHVPGAGSVELVDLAGVGEAAIDSIDASAQTRALEVIEEAGVILWCDPAGVFDAESIALPTATPIVRVRTKSDLPLSTGLRTKTNNALAVCALDGTALGSLQRAIADAVSRRTGSGVGVFVPRHRRALIDSKDGIDAAIGHVDSTKRVIEEPELVAIGLRDAL 426          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A3M2CEY8_9BACT (tRNA modification GTPase MnmE n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CEY8_9BACT)

HSP 1 Score: 188 bits (478), Expect = 7.170e-54
Identity = 113/237 (47.68%), Postives = 141/237 (59.49%), Query Frame = 1
Query:    7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHA---IDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGA--------IPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            ++++LV   GA AG     D   VVLVG PNAGKST+ NALL   R +VS+R GTT                 G V L DLAGL D A   ID ID  AQ LAR+RI +ADA++WCDPTG FD  +  LP + P +RVRTKSDLPG    +G         IPVCA+DGT ++ LRRAIAD A   TG    + +PRHRRAIA  +  +H A   +D EA ++  PEL+A+ L  A+
Sbjct:  205 VQADLVAIIGAAAGAAAERDTPEVVLVGRPNAGKSTLFNALLARPRAIVSDRPGTTRDALAEPLDLSADAPGAGVVTLVDLAGLTDQAEGGIDEIDTAAQHLARQRIARADALLWCDPTGAFDPLAFPLP-NLPTIRVRTKSDLPGSPDRKGVDGDRSSPHIPVCALDGTNLATLRRAIADTAT-NTGPAGAIALPRHRRAIARTLAHLHQARDAVDPEAHALAEPELIAAALRAAI 439          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A2E2NBJ4_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NBJ4_9BACT)

HSP 1 Score: 157 bits (396), Expect = 5.390e-42
Identity = 92/203 (45.32%), Postives = 118/203 (58.13%), Query Frame = 1
Query:   76 VVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            VVLVG PNAGKS + NALLG +R +VS+R GTT                 G+V L DLAG+GD A+D +DA+AQ +ARER+  AD ++ CDP GRF E    L   A VVRVRTK+D+    T   A+ VCAIDG  ++ LRRAIADAA    G      VPRH   +  A+  ++ A++       ++  PEL A  L  AL
Sbjct:  220 VVLVGEPNAGKSALFNALLGRRRAVVSDRPGTTRDALEESLDLTTEAPGAGSVTLVDLAGIGDRAVDPLDAEAQEIARERVRGADVVLHCDPNGRFSE----LDTRATVVRVRTKADIATGETESEALAVCAIDGWRLAPLRRAIADAAQTVRGAARSTVVPRHAAELRAALHAMNNAISTFSGVERTLRDPELTAGELRTAL 418          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A4P5X401_9BACT (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A4P5X401_9BACT)

HSP 1 Score: 149 bits (377), Expect = 5.440e-39
Identity = 93/248 (37.50%), Postives = 130/248 (52.42%), Query Frame = 1
Query:    7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAI----------DAIDADAQRLARERIDKADAIIWCDPTGRFDESSI--KLPADA-----PVVRVRT-----KSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            L +++V H G  +G+     L  V LVG PNAGKST+ NALL +QR + S RAGTT                 G++ L DL GL  HA            A D  AQ  AR  +  AD +IWCDPTGRFD  ++  +L  D      P++RVRT     +++      +Q  + VCA+DG  +S LRRA+AD AC     G+   +PR+RR+++ A   I  A+T++   A  ++ PE +A  L  AL
Sbjct:  205 LHTQIVDHMGGASGQTASSALPRVALVGLPNAGKSTLFNALLRQQRAIASPRAGTTRDIIEEELDLSRDVLGAGSITLQDLPGLS-HATTTNTLDASVQSAADLAAQHAARAAVQSADVLIWCDPTGRFDTLALAGQLHLDTWHAAQPIIRVRTFGDHVRTEAASDANSQAILTVCAVDGWNLSSLRRAVADQACVGKAAGIAALLPRYRRSLSEAASAISYAITDVPANATRLDEPETIAESLRLAL 451          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: UPI001AC8295B (tRNA modification GTPase MnmE n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC8295B)

HSP 1 Score: 147 bits (371), Expect = 3.080e-38
Identity = 95/236 (40.25%), Postives = 120/236 (50.85%), Query Frame = 1
Query:    7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQ----------HTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            L   +  H GA AG         VVLVG PNAGKST+ NALLG +R +    AGTT                 G V L DLAGL D   D  DA AQ  AR  I +AD ++WCDPT RFDE  +  P  A V+R+RT +D P                 A+PVCA+DG  ++ L+RAIA+ AC+     +   +PRHR A+  AI  I +A T +D     +  PE +A  L  AL
Sbjct:  200 LRQAIASHLGARAGAEATVAQPLVVLVGRPNAGKSTLFNALLGRRRAVAGPIAGTTRDALVEPLDLSPSAPGAGTVQLADLAGLDDMQSDQPDALAQAAARHTIARADLLLWCDPTSRFDERDLP-PTSAEVLRIRTFADRPADPHPRVPQSSFRVQHSALPVCALDGWHLADLKRAIAEHACSSNQAPLAALLPRHRAAMHDAIGAIDLAATLIDTRDTGLRRPEELAQTLRAAL 434          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A7C3Q253_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C3Q253_9BACT)

HSP 1 Score: 137 bits (346), Expect = 2.020e-35
Identity = 88/219 (40.18%), Postives = 112/219 (51.14%), Query Frame = 1
Query:   34 GAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADA--PVVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            GA  G    D    V +VG PNAGKST+ NALL  +R + S  AGTT                 G + L DL GL       I+  +QR AR+    ADA+IWCDP G FDE S+     A   V+RVRT  D P +      + VCA+DG  +  LRRA+AD        GV   +PRHRRA+AVA   +  A   +D +A ++  PE+VA  L  AL
Sbjct:  111 GASGGREHTDGQPRVAIVGNPNAGKSTLFNALLERRRAVASPIAGTTRDVLSERLDLSRVAPGAGEIELQDLPGLDPRVGSVIEVQSQRAARDAAAHADALIWCDPDGNFDERSLADLGGAGKAVLRVRTFGDRPAEGLG-AHVEVCALDGWHLDTLRRALADVTGGSISEGVASLLPRHRRALAVARKSLESARRSIDPDAAALAAPEVVAGHLRHAL 328          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A3B1DYR3_9ZZZZ (GTPase and tRNA-U34 5-formylation enzyme TrmE n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DYR3_9ZZZZ)

HSP 1 Score: 139 bits (350), Expect = 3.220e-35
Identity = 88/204 (43.14%), Postives = 115/204 (56.37%), Query Frame = 1
Query:   76 VVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPG-QHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADSIEMPELVASGLCEAL 684
            VVLVG PNAGKST+ NALLG +R +V+E  GTT                  +V L DL GL     DA  + +Q LA E I +ADA++ CDP+G F      +P   PV+RVRTK+D PG +  + G + VCA+DG  + V+RR IAD A    G    V + RH R I  A+  +  A  +LD  A +++ PELVA GL  AL
Sbjct:  235 VVLVGVPNAGKSTLFNALLGRRRSVVAEEVGTTRDVLLEVLHLAEVAGPGLSVQLADLPGL-----DATSS-SQALALEAIHRADAVVHCDPSGEFSTGLWAIPESTPVLRVRTKADQPGGREGSSGDVEVCALDGWHLGVVRRGIADIALRAPGGSCSVALTRHAREITHAVEQLAAAEAQLDPTARALDAPELVADGLRSAL 432          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: UPI00199F2E4B (50S ribosome-binding GTPase n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI00199F2E4B)

HSP 1 Score: 135 bits (340), Expect = 1.360e-33
Identity = 96/253 (37.94%), Postives = 129/253 (50.99%), Query Frame = 1
Query:    4 ELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGLGDHAIDA--------IDADAQRLARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQGAIP--------VCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGIHMALTELDREADS----------IEMPELVASGLCEAL 684
            +L   L+ + G   G   R     VVL GAPNAGKST+ NALLG  R +VS  AGTT                   V LTDLAG+    + A        ID++AQ+ AR+ I +AD ++ CDP+GRF +  +     APV+R++TK+DLP  H A+   P        VCA+DG  +  LRRAIAD+A     +G    +PRH+R++  A+  I  A+  L     S          I  PEL+A  L EAL
Sbjct:  214 QLRESLMAYVGHVKGAESRSANPVVVLAGAPNAGKSTLFNALLGRHRAVVSRVAGTTRDVIVEDLDLSRDIPGGPVVKLTDLAGVDAALLRAAPHSTALHIDSEAQQRARQAIAEADVVVHCDPSGRFVDD-LPQHGKAPVIRLQTKADLPHVHQAKSPAPWAVAPSLAVCALDGWNLGPLRRAIADSASQDRASGSLSVLPRHQRSLTHAVASISEAIARLKAPVQSSSPGGPDHQAIMAPELIAGSLREAL 465          
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Match: A0A651EU60_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651EU60_9BACT)

HSP 1 Score: 134 bits (338), Expect = 1.860e-33
Identity = 99/237 (41.77%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    7 LESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVLVSERAGTTXXXXXXXXXXXXXXXXXGAVLLTDLAGL--GDHAIDAIDADAQRLARERIDKADAIIWCDPTGRFDESSIK-LPADAP--VVRVRTKSDLPGQHTAQGAIPVCAIDGTMMSVLRRAIADAACARTGTGV----GVFVPRHRRAIAVAIMGIHMALTELD--READSIEMPELVASGLCEAL 684
            L+ E+V   G G+   V +    + LVGAPNAGKST+ NALLG +R +VSE+AGTT                  A+ L DLAGL  G  +       AQ  AR+ I  ADAI+WCDP+G+FD++ +  L A+ P  V+RVRTK+DL         + VCA+DG  M  L RA+ DAA    G       G  V RHR A+  A   +  A+  ++  REA SIE   LVAS L  AL
Sbjct:  205 LDVEMVSLLGPGSRATVDESPVRMALVGAPNAGKSTLFNALLGRERAIVSEQAGTTRDVIAEALPRDPMMPHAPAIELLDLAGLDAGSASDGRAHGAAQLAARDAIGAADAIVWCDPSGQFDDAKVAHLVAERPAMVLRVRTKADLVAPQDTGEMLAVCALDGWRMDALHRALCDAATTVRGYSTPLAPGSLVSRHRAALQEAQRCVREAMELINPAREAHSIE---LVASSLRLAL 438          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99780.22940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D9CI68_9BACT1.680e-6250.66tRNA modification GTPase MnmE n=1 Tax=Phycisphaera... [more]
A0A2A4RNI2_9BACT4.900e-5952.21tRNA modification GTPase MnmE n=1 Tax=bacterium Ta... [more]
A0A3M2CEY8_9BACT7.170e-5447.68tRNA modification GTPase MnmE n=1 Tax=Planctomycet... [more]
A0A2E2NBJ4_9BACT5.390e-4245.32tRNA modification GTPase MnmE n=1 Tax=Phycisphaera... [more]
A0A4P5X401_9BACT5.440e-3937.50tRNA modification GTPase MnmE n=1 Tax=Phycisphaera... [more]
UPI001AC8295B3.080e-3840.25tRNA modification GTPase MnmE n=1 Tax=Phycisphaera... [more]
A0A7C3Q253_9BACT2.020e-3540.18Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3B1DYR3_9ZZZZ3.220e-3543.14GTPase and tRNA-U34 5-formylation enzyme TrmE n=1 ... [more]
UPI00199F2E4B1.360e-3337.9450S ribosome-binding GTPase n=1 Tax=Pyrinomonadace... [more]
A0A651EU60_9BACT1.860e-3341.77Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99780contigM-pyrifera_M_contig99780:3..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score92.4
Seed ortholog evalue2.9e-16
Seed eggNOG ortholog441620.Mpop_1658
Preferred namemnmE
KEGG rclassRC00053,RC00209,RC00870
KEGG koko:K03650
KEGG ReactionR08701
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
EggNOG OGs1JR6P@119045,1MUCQ@1224,2TQZW@28211,COG0486@1,COG0486@2
COG Functional cat.J
Best tax levelMethylobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size684
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.9546726-CDS-M-pyrifera_M_contig99780:2..6861622816914.9546726-CDS-M-pyrifera_M_contig99780:2..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99780 3..686 +
1692278252.9695935-CDS-M-pyrifera_M_contig99780:2..6861692278252.9695935-CDS-M-pyrifera_M_contig99780:2..686Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99780 3..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99780.22940.1prot_M-pyrifera_M_contig99780.22940.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99780 3..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99780.22940.1

>prot_M-pyrifera_M_contig99780.22940.1 ID=prot_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=228bp
DELESELVLHSGAGAGEIVRDDLATVVLVGAPNAGKSTMMNALLGEQRVL
VSERAGTTRDAISERLDLSRDLPGAGAVLLTDLAGLGDHAIDAIDADAQR
LARERIDKADAIIWCDPTGRFDESSIKLPADAPVVRVRTKSDLPGQHTAQ
GAIPVCAIDGTMMSVLRRAIADAACARTGTGVGVFVPRHRRAIAVAIMGI
HMALTELDREADSIEMPELVASGLCEAL
back to top

mRNA from alignment at M-pyrifera_M_contig99780:3..686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99780.22940.1 ID=mRNA_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig99780:3..686+ (Macrocystis pyrifera P11B4 male)
GATGAGCTTGAATCGGAACTCGTGCTACACAGTGGCGCCGGCGCAGGAGA AATCGTGCGTGACGATCTCGCGACAGTCGTGCTTGTCGGCGCGCCCAATG CAGGGAAATCAACGATGATGAACGCGTTGCTTGGGGAGCAGCGCGTGCTC GTCTCTGAGCGTGCGGGAACGACACGCGATGCGATCAGCGAGCGTCTGGA TCTCTCGCGTGATCTCCCAGGCGCAGGCGCCGTGCTGCTGACAGATCTCG CGGGATTGGGAGATCACGCGATCGACGCGATTGATGCAGACGCTCAGAGA CTCGCACGCGAGCGGATCGACAAAGCCGACGCGATCATCTGGTGCGACCC AACGGGTCGATTCGACGAATCAAGCATCAAGCTCCCTGCTGATGCGCCCG TCGTGCGTGTGCGCACGAAGTCCGATCTCCCAGGACAGCACACGGCGCAA GGCGCGATCCCTGTCTGCGCAATCGACGGCACAATGATGAGCGTGCTTCG TCGAGCGATCGCTGACGCCGCCTGCGCACGCACAGGGACAGGAGTAGGCG TCTTCGTCCCGAGACATCGACGAGCGATCGCGGTCGCGATCATGGGGATC CACATGGCGCTGACAGAGCTGGATCGGGAAGCAGATTCGATCGAGATGCC GGAACTCGTCGCGAGCGGGCTCTGCGAGGCGCTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99780:3..686+

>mRNA_M-pyrifera_M_contig99780.22940.1 ID=mRNA_M-pyrifera_M_contig99780.22940.1|Name=mRNA_M-pyrifera_M_contig99780.22940.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1368bp|location=Sequence derived from alignment at M-pyrifera_M_contig99780:3..686+ (Macrocystis pyrifera P11B4 male)
GATGAGCTTGAATCGGAACTCGTGCTACACAGTGGCGCCGGCGCAGGAGA
AATCGTGCGTGACGATCTCGCGACAGTCGTGCTTGTCGGCGCGCCCAATG
CAGGGAAATCAACGATGATGAACGCGTTGCTTGGGGAGCAGCGCGTGCTC
GTCTCTGAGCGTGCGGGAACGACACGCGATGCGATCAGCGAGCGTCTGGA
TCTCTCGCGTGATCTCCCAGGCGCAGGCGCCGTGCTGCTGACAGATCTCG
CGGGATTGGGAGATCACGCGATCGACGCGATTGATGCAGACGCTCAGAGA
CTCGCACGCGAGCGGATCGACAAAGCCGACGCGATCATCTGGTGCGACCC
AACGGGTCGATTCGACGAATCAAGCATCAAGCTCCCTGCTGATGCGCCCG
TCGTGCGTGTGCGCACGAAGTCCGATCTCCCAGGACAGCACACGGCGCAA
GGCGCGATCCCTGTCTGCGCAATCGACGGCACAATGATGAGCGTGCTTCG
TCGAGCGATCGCTGACGCCGCCTGCGCACGCACAGGGACAGGAGTAGGCG
TCTTCGTCCCGAGACATCGACGAGCGATCGCGGTCGCGATCATGGGGATC
CACATGGCGCTGACAGAGCTGGATCGGGAAGCAGATTCGATCGAGATGCC
GGAACTCGTCGCGAGCGGGCTCTGCGAGGCGCTCGATGAGCTTGAATCGG
AACTCGTGCTACACAGTGGCGCCGGCGCAGGAGAAATCGTGCGTGACGAT
CTCGCGACAGTCGTGCTTGTCGGCGCGCCCAATGCAGGGAAATCAACGAT
GATGAACGCGTTGCTTGGGGAGCAGCGCGTGCTCGTCTCTGAGCGTGCGG
GAACGACACGCGATGCGATCAGCGAGCGTCTGGATCTCTCGCGTGATCTC
CCAGGCGCAGGCGCCGTGCTGCTGACAGATCTCGCGGGATTGGGAGATCA
CGCGATCGACGCGATTGATGCAGACGCTCAGAGACTCGCACGCGAGCGGA
TCGACAAAGCCGACGCGATCATCTGGTGCGACCCAACGGGTCGATTCGAC
GAATCAAGCATCAAGCTCCCTGCTGATGCGCCCGTCGTGCGTGTGCGCAC
GAAGTCCGATCTCCCAGGACAGCACACGGCGCAAGGCGCGATCCCTGTCT
GCGCAATCGACGGCACAATGATGAGCGTGCTTCGTCGAGCGATCGCTGAC
GCCGCCTGCGCACGCACAGGGACAGGAGTAGGCGTCTTCGTCCCGAGACA
TCGACGAGCGATCGCGGTCGCGATCATGGGGATCCACATGGCGCTGACAG
AGCTGGATCGGGAAGCAGATTCGATCGAGATGCCGGAACTCGTCGCGAGC
GGGCTCTGCGAGGCGCTC
back to top