mRNA_M-pyrifera_M_contig99759.22930.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99759.22930.1
Unique NamemRNA_M-pyrifera_M_contig99759.22930.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99759.22930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99759contigM-pyrifera_M_contig99759:58..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.9
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog3702.AT3G01890.1
KEGG koko:K11650
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009909,GO:0009987,GO:0010224,GO:0010468,GO:0019222,GO:0022622,GO:0032501,GO:0032502,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0048364,GO:0048580,GO:0048731,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051239,GO:0051716,GO:0060255,GO:0065007,GO:0071704,GO:0090304,GO:0099402,GO:1901360,GO:2000024,GO:2000026,GO:2000241
EggNOG free text desc.SWIB/MDM2 domain
EggNOG OGs37JZF@33090,3G8TH@35493,3HPBN@3699,COG5531@1,KOG2570@2759
COG Functional cat.BK
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons1
Model size414
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.5095599-CDS-M-pyrifera_M_contig99759:57..4531622816914.5095599-CDS-M-pyrifera_M_contig99759:57..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99759 58..453 -
1692278252.7142618-CDS-M-pyrifera_M_contig99759:57..4531692278252.7142618-CDS-M-pyrifera_M_contig99759:57..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99759 58..453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.521156-UTR-M-pyrifera_M_contig99759:453..4711622816914.521156-UTR-M-pyrifera_M_contig99759:453..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99759 454..471 -
1692278252.7262375-UTR-M-pyrifera_M_contig99759:453..4711692278252.7262375-UTR-M-pyrifera_M_contig99759:453..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99759 454..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99759.22930.1prot_M-pyrifera_M_contig99759.22930.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99759 58..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99759.22930.1

>prot_M-pyrifera_M_contig99759.22930.1 ID=prot_M-pyrifera_M_contig99759.22930.1|Name=mRNA_M-pyrifera_M_contig99759.22930.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MRLSALTRSWRQWKPTRADARRDGFRIRRAVVGAHRAVLELHSKTPACTF
TTEPLLARAIGVDAGTQDQILEAVWMYVEAHGLQDGTSPSSVQPDRVLRS
LVGPNRTSAAALVQAVLRSLRPQPAARIVHEI
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mRNA from alignment at M-pyrifera_M_contig99759:58..471-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99759.22930.1 ID=mRNA_M-pyrifera_M_contig99759.22930.1|Name=mRNA_M-pyrifera_M_contig99759.22930.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig99759:58..471- (Macrocystis pyrifera P11B4 male)
CTTGTCGTTTCATGCGATATGAGGCTGTCAGCGCTGACGCGCAGCTGGAG
GCAGTGGAAGCCCACCCGCGCAGACGCAAGGAGAGATGGGTTTCGCATTC
GCCGCGCCGTTGTGGGCGCTCACCGCGCTGTGCTGGAGCTGCACTCCAAG
ACGCCTGCGTGCACGTTCACGACGGAGCCATTGCTAGCGCGCGCCATCGG
TGTGGATGCTGGCACCCAAGACCAGATTCTAGAGGCTGTGTGGATGTATG
TGGAGGCGCACGGGCTCCAGGATGGCACTTCCCCGTCCAGCGTGCAGCCG
GATCGGGTGCTTCGATCTCTGGTGGGACCGAATCGTACGTCAGCGGCGGC
GCTTGTTCAAGCAGTGCTGCGGAGTCTACGTCCGCAGCCCGCGGCACGTA
TTGTGCATGAGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99759:58..471-

>mRNA_M-pyrifera_M_contig99759.22930.1 ID=mRNA_M-pyrifera_M_contig99759.22930.1|Name=mRNA_M-pyrifera_M_contig99759.22930.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig99759:58..471- (Macrocystis pyrifera P11B4 male)
ATGAGGCTGTCAGCGCTGACGCGCAGCTGGAGGCAGTGGAAGCCCACCCG
CGCAGACGCAAGGAGAGATGGGTTTCGCATTCGCCGCGCCGTTGTGGGCG
CTCACCGCGCTGTGCTGGAGCTGCACTCCAAGACGCCTGCGTGCACGTTC
ACGACGGAGCCATTGCTAGCGCGCGCCATCGGTGTGGATGCTGGCACCCA
AGACCAGATTCTAGAGGCTGTGTGGATGTATGTGGAGGCGCACGGGCTCC
AGGATGGCACTTCCCCGTCCAGCGTGCAGCCGGATCGGGTGCTTCGATCT
CTGGTGGGACCGAATCGTACGTCAGCGGCGGCGCTTGTTCAAGCAGTGCT
GCGGAGTCTACGTCCGCAGCCCGCGGCACGTATTGTGCATGAGATTATGA
GGCTGTCAGCGCTGACGCGCAGCTGGAGGCAGTGGAAGCCCACCCGCGCA
GACGCAAGGAGAGATGGGTTTCGCATTCGCCGCGCCGTTGTGGGCGCTCA
CCGCGCTGTGCTGGAGCTGCACTCCAAGACGCCTGCGTGCACGTTCACGA
CGGAGCCATTGCTAGCGCGCGCCATCGGTGTGGATGCTGGCACCCAAGAC
CAGATTCTAGAGGCTGTGTGGATGTATGTGGAGGCGCACGGGCTCCAGGA
TGGCACTTCCCCGTCCAGCGTGCAGCCGGATCGGGTGCTTCGATCTCTGG
TGGGACCGAATCGTACGTCAGCGGCGGCGCTTGTTCAAGCAGTGCTGCGG
AGTCTACGTCCGCAGCCCGCGGCACGTATTGTGCATGAGATT
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