mRNA_M-pyrifera_M_contig99741.22923.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99741.22923.1
Unique NamemRNA_M-pyrifera_M_contig99741.22923.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99741.22923.1 vs. uniprot
Match: A0A833SAT9_9HYME (Uncharacterized protein n=1 Tax=Frieseomelitta varia TaxID=561572 RepID=A0A833SAT9_9HYME)

HSP 1 Score: 52.0 bits (123), Expect = 2.070e-5
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 LMYCGCSDGRIVVYSGSEGEEVLSFHGHGKAVTGLEISDSC--LWSCSEDGTVCTWNI 168
            L+Y GC+D +I V+S  +G+ V +  GH + + GL + DS   L SCSEDGTV  W++
Sbjct:  134 LLYAGCNDSKIYVFSLEDGKLVTTLEGHTRFIHGLSLLDSGTQLASCSEDGTVRLWDL 191
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99741.22923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A833SAT9_9HYME2.070e-544.83Uncharacterized protein n=1 Tax=Frieseomelitta var... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99741contigM-pyrifera_M_contig99741:155..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.1967814-UTR-M-pyrifera_M_contig99741:154..1571622816914.1967814-UTR-M-pyrifera_M_contig99741:154..157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99741 155..157 +
1692278252.5319219-UTR-M-pyrifera_M_contig99741:154..1571692278252.5319219-UTR-M-pyrifera_M_contig99741:154..157Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99741 155..157 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.207979-CDS-M-pyrifera_M_contig99741:157..4901622816914.207979-CDS-M-pyrifera_M_contig99741:157..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99741 158..490 +
1692278252.5443275-CDS-M-pyrifera_M_contig99741:157..4901692278252.5443275-CDS-M-pyrifera_M_contig99741:157..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99741 158..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99741.22923.1prot_M-pyrifera_M_contig99741.22923.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99741 158..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99741.22923.1

>prot_M-pyrifera_M_contig99741.22923.1 ID=prot_M-pyrifera_M_contig99741.22923.1|Name=mRNA_M-pyrifera_M_contig99741.22923.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MYCGCSDGRIVVYSGSEGEEVLSFHGHGKAVTGLEISDSCLWSCSEDGTV
CTWNIACDPSGGSPSNSLVSKSDHHGDRVVGLVNVQDRFVLSYSSDGTLL
VWDAAEAVPVG
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mRNA from alignment at M-pyrifera_M_contig99741:155..490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99741.22923.1 ID=mRNA_M-pyrifera_M_contig99741.22923.1|Name=mRNA_M-pyrifera_M_contig99741.22923.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig99741:155..490+ (Macrocystis pyrifera P11B4 male)
CTCATGTACTGCGGCTGCTCAGACGGCCGCATTGTCGTCTACTCGGGCAG
CGAAGGCGAGGAGGTCCTCTCCTTCCACGGCCATGGCAAGGCAGTCACTG
GCTTGGAGATCTCCGACTCGTGCCTTTGGTCCTGCTCAGAGGATGGCACC
GTATGCACGTGGAACATCGCGTGCGACCCCAGTGGCGGCTCTCCTTCCAA
CTCACTCGTCTCCAAGTCAGACCACCACGGCGACCGAGTGGTGGGCCTCG
TCAACGTACAGGACCGCTTCGTGCTGAGCTACTCCTCCGACGGCACTCTG
CTCGTCTGGGACGCCGCCGAGGCGGTGCCAGTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99741:155..490+

>mRNA_M-pyrifera_M_contig99741.22923.1 ID=mRNA_M-pyrifera_M_contig99741.22923.1|Name=mRNA_M-pyrifera_M_contig99741.22923.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig99741:155..490+ (Macrocystis pyrifera P11B4 male)
ATGTACTGCGGCTGCTCAGACGGCCGCATTGTCGTCTACTCGGGCAGCGA
AGGCGAGGAGGTCCTCTCCTTCCACGGCCATGGCAAGGCAGTCACTGGCT
TGGAGATCTCCGACTCGTGCCTTTGGTCCTGCTCAGAGGATGGCACCGTA
TGCACGTGGAACATCGCGTGCGACCCCAGTGGCGGCTCTCCTTCCAACTC
ACTCGTCTCCAAGTCAGACCACCACGGCGACCGAGTGGTGGGCCTCGTCA
ACGTACAGGACCGCTTCGTGCTGAGCTACTCCTCCGACGGCACTCTGCTC
GTCTGGGACGCCGCCGAGGCGGTGCCAGTCGGCATGTACTGCGGCTGCTC
AGACGGCCGCATTGTCGTCTACTCGGGCAGCGAAGGCGAGGAGGTCCTCT
CCTTCCACGGCCATGGCAAGGCAGTCACTGGCTTGGAGATCTCCGACTCG
TGCCTTTGGTCCTGCTCAGAGGATGGCACCGTATGCACGTGGAACATCGC
GTGCGACCCCAGTGGCGGCTCTCCTTCCAACTCACTCGTCTCCAAGTCAG
ACCACCACGGCGACCGAGTGGTGGGCCTCGTCAACGTACAGGACCGCTTC
GTGCTGAGCTACTCCTCCGACGGCACTCTGCTCGTCTGGGACGCCGCCGA
GGCGGTGCCAGTCGGC
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