mRNA_M-pyrifera_M_contig99735.22920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99735.22920.1
Unique NamemRNA_M-pyrifera_M_contig99735.22920.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A6H5KS53_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS53_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.230e-24
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:   37 APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
            APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK
Sbjct:   54 APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 98
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: D7FYJ1_ECTSI (UBC core domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.300e-23
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   37 APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
            APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCT K
Sbjct:   44 APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTVK 88
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: F4Q3Z1_CAVFA (Ubiquitin-conjugating enzyme E2W n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q3Z1_CAVFA)

HSP 1 Score: 89.7 bits (221), Expect = 2.510e-21
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   28 PQPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
            P P P+HPHIY+NGHICLSILYD WSPALT+ S+CLSILSMLSSCT K
Sbjct:   68 PGPVPVHPHIYSNGHICLSILYDHWSPALTVSSICLSILSMLSSCTEK 115
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A4P9X9U3_9FUNG (UBC core domain-containing protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X9U3_9FUNG)

HSP 1 Score: 89.0 bits (219), Expect = 5.590e-21
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   31 QPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
             P P+HPH+Y+NGHICLSILYD+WSPALTIQSVCLSI SMLSSCT K
Sbjct:   74 DPVPVHPHVYSNGHICLSILYDQWSPALTIQSVCLSIQSMLSSCTKK 120
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: UPI001920AD02 (probable ubiquitin-conjugating enzyme E2 16 isoform X2 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001920AD02)

HSP 1 Score: 88.6 bits (218), Expect = 5.810e-21
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   31 QPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAKV 174
            QPAP+HPHIY+NGHICL ILYD WSPA+T+ S+C+SILSMLSS TAKV
Sbjct:   84 QPAPIHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSATAKV 131
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A2C9VWK6_MANES (UBC core domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VWK6_MANES)

HSP 1 Score: 88.2 bits (217), Expect = 8.030e-21
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:   34 PAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAKVSL 180
            PAPLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS TAKV L
Sbjct:   85 PAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSATAKVCL 133
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: F1A0F8_DICPU (UBC core domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A0F8_DICPU)

HSP 1 Score: 88.2 bits (217), Expect = 1.120e-20
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   34 PAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
            P P+HPHIY+NGHICLSILYD WSPALT+ SVCLSILSMLSSCT K
Sbjct:   74 PPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLSSCTEK 119
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A1D1ZE26_9ARAE (Putative ubiquitin-conjugating enzyme E2 16 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZE26_9ARAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.130e-20
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   31 QPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 171
            QP PLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS TAK
Sbjct:   43 QPVPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTAK 89
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BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A151ZDL3_9MYCE (Rab GTPase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZDL3_9MYCE)

HSP 1 Score: 87.4 bits (215), Expect = 2.310e-20
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:   37 APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAKV 174
            AP+HPHIY+NGHICLSILYD WSPALT+ SVC+SILSMLSSCT KV
Sbjct:   76 APIHPHIYSNGHICLSILYDAWSPALTVSSVCVSILSMLSSCTEKV 121
[Close]
BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Match: A0A1Y2EQE3_9FUNG (Ubiquitin-conjugating enzyme n=2 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EQE3_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 4.400e-20
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   40 PLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAKV 174
            P+HPHIY+NGHICLSILYD+WSPALT+ SVCLSI+SMLSSCT KV
Sbjct:   76 PVHPHIYSNGHICLSILYDQWSPALTVTSVCLSIISMLSSCTRKV 120
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99735.22920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS53_9PHAE4.230e-24100.00UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FYJ1_ECTSI1.300e-2397.78UBC core domain-containing protein n=1 Tax=Ectocar... [more]
F4Q3Z1_CAVFA2.510e-2181.25Ubiquitin-conjugating enzyme E2W n=1 Tax=Cavenderi... [more]
A0A4P9X9U3_9FUNG5.590e-2182.98UBC core domain-containing protein n=2 Tax=Cauloch... [more]
UPI001920AD025.810e-2179.17probable ubiquitin-conjugating enzyme E2 16 isofor... [more]
A0A2C9VWK6_MANES8.030e-2181.63UBC core domain-containing protein n=1 Tax=Manihot... [more]
F1A0F8_DICPU1.120e-2084.78UBC core domain-containing protein n=1 Tax=Dictyos... [more]
A0A1D1ZE26_9ARAE2.130e-2080.85Putative ubiquitin-conjugating enzyme E2 16 (Fragm... [more]
A0A151ZDL3_9MYCE2.310e-2084.78Rab GTPase n=1 Tax=Tieghemostelium lacteum TaxID=3... [more]
A0A1Y2EQE3_9FUNG4.400e-2084.44Ubiquitin-conjugating enzyme n=2 Tax=Neocallimasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99735contigM-pyrifera_M_contig99735:347..553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D7FYJ1
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688
KEGG ReactionR04112
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0427@2759
EC2.3.2.25
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size207
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.0925457-CDS-M-pyrifera_M_contig99735:346..5321622816914.0925457-CDS-M-pyrifera_M_contig99735:346..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99735 347..532 -
1692278252.459119-CDS-M-pyrifera_M_contig99735:346..5321692278252.459119-CDS-M-pyrifera_M_contig99735:346..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99735 347..532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.1039226-UTR-M-pyrifera_M_contig99735:532..5531622816914.1039226-UTR-M-pyrifera_M_contig99735:532..553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99735 533..553 -
1692278252.476077-UTR-M-pyrifera_M_contig99735:532..5531692278252.476077-UTR-M-pyrifera_M_contig99735:532..553Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99735 533..553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99735.22920.1prot_M-pyrifera_M_contig99735.22920.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99735 347..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99735.22920.1

>prot_M-pyrifera_M_contig99735.22920.1 ID=prot_M-pyrifera_M_contig99735.22920.1|Name=mRNA_M-pyrifera_M_contig99735.22920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MMPQPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK
VSLLVLACSGL*
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mRNA from alignment at M-pyrifera_M_contig99735:347..553-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99735.22920.1 ID=mRNA_M-pyrifera_M_contig99735.22920.1|Name=mRNA_M-pyrifera_M_contig99735.22920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig99735:347..553- (Macrocystis pyrifera P11B4 male)
TTTGTCTTGCCGCCATCGCCAATGATGCCCCAGCCCGCACCCCTTCACCC
TCACATTTACACGAACGGGCACATTTGCTTGTCCATCTTATATGACGAAT
GGAGCCCAGCGCTGACGATTCAGAGCGTATGTCTCAGCATTCTCTCCATG
CTTTCTAGCTGCACGGCTAAGGTAAGCCTCCTCGTCTTAGCATGTTCGGG
TTTATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99735:347..553-

>mRNA_M-pyrifera_M_contig99735.22920.1 ID=mRNA_M-pyrifera_M_contig99735.22920.1|Name=mRNA_M-pyrifera_M_contig99735.22920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig99735:347..553- (Macrocystis pyrifera P11B4 male)
ATGATGCCCCAGCCCGCACCCCTTCACCCTCACATTTACACGAACGGGCA
CATTTGCTTGTCCATCTTATATGACGAATGGAGCCCAGCGCTGACGATTC
AGAGCGTATGTCTCAGCATTCTCTCCATGCTTTCTAGCTGCACGGCTAAG
GTAAGCCTCCTCGTCTTAGCATGTTCGGGTTTATAGATGATGCCCCAGCC
CGCACCCCTTCACCCTCACATTTACACGAACGGGCACATTTGCTTGTCCA
TCTTATATGACGAATGGAGCCCAGCGCTGACGATTCAGAGCGTATGTCTC
AGCATTCTCTCCATGCTTTCTAGCTGCACGGCTAAGGTAAGCCTCCTCGT
CTTAGCATGTTCGGGTTTATAG
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