mRNA_M-pyrifera_M_contig9973.22919.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9973.22919.1
Unique NamemRNA_M-pyrifera_M_contig9973.22919.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9973.22919.1 vs. uniprot
Match: D7G709_ECTSI (Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G709_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-14
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 VEAEMEAEAKAFELERKNNPEENEDHDTRKLPKPERMRLVAKNKEARSQTY 153
            VEAEMEAEAKAFE E+KNNPEE +DHDTRKLPKPERMRLV KNKE  ++ +
Sbjct:  544 VEAEMEAEAKAFEEEKKNNPEEGDDHDTRKLPKPERMRLVMKNKEEGTELF 594
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9973.22919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G709_ECTSI1.210e-1478.43Heat shock protein 70 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9973contigM-pyrifera_M_contig9973:7652..7828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size165
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.0478692-UTR-M-pyrifera_M_contig9973:7651..76631622816914.0478692-UTR-M-pyrifera_M_contig9973:7651..7663Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9973 7652..7663 +
1692278252.430812-UTR-M-pyrifera_M_contig9973:7651..76631692278252.430812-UTR-M-pyrifera_M_contig9973:7651..7663Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9973 7652..7663 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.0598567-CDS-M-pyrifera_M_contig9973:7663..78281622816914.0598567-CDS-M-pyrifera_M_contig9973:7663..7828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9973 7664..7828 +
1692278252.4438984-CDS-M-pyrifera_M_contig9973:7663..78281692278252.4438984-CDS-M-pyrifera_M_contig9973:7663..7828Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9973 7664..7828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9973.22919.1prot_M-pyrifera_M_contig9973.22919.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9973 7664..7828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9973.22919.1

>prot_M-pyrifera_M_contig9973.22919.1 ID=prot_M-pyrifera_M_contig9973.22919.1|Name=mRNA_M-pyrifera_M_contig9973.22919.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MEAEAKAFELERKNNPEENEDHDTRKLPKPERMRLVAKNKEARSQTYMSI
DSAC*
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mRNA from alignment at M-pyrifera_M_contig9973:7652..7828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9973.22919.1 ID=mRNA_M-pyrifera_M_contig9973.22919.1|Name=mRNA_M-pyrifera_M_contig9973.22919.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig9973:7652..7828+ (Macrocystis pyrifera P11B4 male)
GTGGAGGCTGAGATGGAAGCGGAGGCGAAAGCGTTCGAGCTGGAGCGAAA
GAACAACCCTGAGGAGAACGAGGACCACGATACGAGGAAGCTGCCCAAGC
CGGAGAGAATGCGGCTCGTCGCCAAGAATAAGGAGGCAAGAAGCCAGACT
TACATGAGTATTGATAGTGCCTGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9973:7652..7828+

>mRNA_M-pyrifera_M_contig9973.22919.1 ID=mRNA_M-pyrifera_M_contig9973.22919.1|Name=mRNA_M-pyrifera_M_contig9973.22919.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig9973:7652..7828+ (Macrocystis pyrifera P11B4 male)
ATGGAAGCGGAGGCGAAAGCGTTCGAGCTGGAGCGAAAGAACAACCCTGA
GGAGAACGAGGACCACGATACGAGGAAGCTGCCCAAGCCGGAGAGAATGC
GGCTCGTCGCCAAGAATAAGGAGGCAAGAAGCCAGACTTACATGAGTATT
GATAGTGCCTGCTGAATGGAAGCGGAGGCGAAAGCGTTCGAGCTGGAGCG
AAAGAACAACCCTGAGGAGAACGAGGACCACGATACGAGGAAGCTGCCCA
AGCCGGAGAGAATGCGGCTCGTCGCCAAGAATAAGGAGGCAAGAAGCCAG
ACTTACATGAGTATTGATAGTGCCTGCTGA
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