mRNA_M-pyrifera_M_contig99664.22908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99664.22908.1
Unique NamemRNA_M-pyrifera_M_contig99664.22908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: H3GQD9_PHYRM (PhoD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQD9_PHYRM)

HSP 1 Score: 97.1 bits (240), Expect = 6.860e-21
Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVETNN-------VHLTV-HLGDQIYADH-------IPGEQEESEG-------YCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQLTHE 417
            C+R+V+D DD + ERLA  VE ++       VH  + HLGDQIYAD        +P   +E E        +   LA+FR  Y  ++G  +A+RVLR  A+ MLPDDHE+ NNF   +    F   G   +  S+E+R      Q   RAG+QA++E+Q QL HE
Sbjct:  151 CDRYVDDHDDVLMERLASDVEAHDDAVGASSVHFGMAHLGDQIYADAGESSIKVVPFPAKEMEDPKQKRARFEAVLAQFRAIYRETFGRKAAQRVLRIGAHWMLPDDHEIINNFNHELIQKAF--KGPQNSLLSEEERERLVALQLHCRAGLQAYYEFQYQLYHE 313          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A329STD8_9STRA (PhoD domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329STD8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.580e-21
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVE-------TNNVHL-TVHLGDQIYAD--------------HIPGEQEESEGYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQLTHE 417
            C+RFV+D DD + ER+A  +E       +++VH  T HLGDQIYAD               +  ++     Y   L +FR  Y  ++G  +A+RVLR  A+ MLPDDHE+ NNF + +    F  +G      SD +R      Q   RAG+QA++E+Q QL H+
Sbjct:  147 CDRFVDDHDDVLMERIASDIEAHDDALGSSSVHFGTAHLGDQIYADAGELSIKIVPFPLKDMADDKRLRARYDAVLQQFRGIYRKTFGRKAAQRVLRVGAHWMLPDDHEIINNFNSELVQKAF--EGPKNPLLSDSERERLVALQLHCRAGLQAYYEFQYQLYHD 309          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A3F2S533_9STRA (PhoD domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S533_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.700e-20
Identity = 65/165 (39.39%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVETNN-------VHLTV-HLGDQIYADHIP--------GEQEESEG------YCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQLTHE 417
            C+RFV+D DD M ERLA  +E ++       VH  + HLGDQIYAD  P          +E  +G      Y   L +FR  Y  ++G  +A+RVLR  A+ MLPDDHEV NNF   +    F      + E S+++R      Q   RAG+QA++E+Q QL  E
Sbjct:  430 CDRFVDDHDDVMMERLANDIEAHDDATGASSVHFGMAHLGDQIYADAGPLSIKVVPISMKEIRDGVMKRARYNAVLEQFRGIYRKTFGRKAAQRVLRVGAHWMLPDDHEVINNFNFELVQNAF--QRAQSPEVSEKERERLAALQLHCRAGLQAYYEFQYQLNRE 592          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: W2QTM5_PHYPN (PhoD domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QTM5_PHYPN)

HSP 1 Score: 95.1 bits (235), Expect = 4.520e-20
Identity = 58/163 (35.58%), Postives = 86/163 (52.76%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVETNN-------VHL-TVHLGDQIYAD--------------HIPGEQEESEGYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDR--RHQFLARAGIQAFFEYQAQLTHE 417
            C+RFV+D DD + ER+A  +E ++       VH  T HLGDQIYAD               +  +++    Y   L +FR  Y  ++G  +A+RVLR  A+ M+PDDHE+ NNF   +    F +        S+ +R    Q   RAG+QA++E+Q QL H+
Sbjct:  147 CDRFVDDHDDVLMERIASDIEAHDGALGSSTVHFGTAHLGDQIYADAGELSIKVVPFPLKDMKDDKKRRMRYDAVLQQFRGIYRKTFGRKAAQRVLRVGAHWMIPDDHEIVNNFNFELVQKAFQAPHNLLLSESERERLVALQLHCRAGLQAYYEFQYQLYHD 309          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A8J5IYU5_9STRA (PhoD domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IYU5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVE-------TNNVHL-TVHLGDQIYAD--------------HIPGEQEESEGYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQL 408
            C+RFV+D DD + ER+A  +E       +++VH  T HLGDQIYAD               +  ++     Y   L +FR  Y  ++G  +A+RVLR  A+ MLPDDHE+ NNF + +    F  +G      SD +R      Q   RAG+QA++E+Q QL
Sbjct:  494 CDRFVDDHDDVLMERIASDIEAHDDALGSSSVHFGTAHLGDQIYADAGELSIKIVPFPLKDMADDKRLRARYDAVLQQFRGIYRKTFGRKAAQRVLRVGAHWMLPDDHEIINNFNSELVQKAF--EGPKNPLLSDSERERLVALQLHCRAGLQAYYEFQYQL 653          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A2P4X538_9STRA (PhoD domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X538_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.400e-19
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVE-------TNNVHLTV-HLGDQIYADH-------IPGEQEESEG-------YCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRHQFLA-----RAGIQAFFEYQAQLTHE 417
            C+RFV+D DD + ER+A  VE       +++VH  + HLGDQIYAD        +P   +E +        Y   L +FR  Y  ++G  +A+RVLR  A+ MLPDDHE+ NNF   +    F    V +   SD  +R +F+A     RAG+QA++E+Q QL H+
Sbjct:  147 CDRFVDDHDDVLMERIAGDVEAHDDALGSSSVHFGMAHLGDQIYADAGELSIKVVPFPLKEMKDTKKRRARYDALLDQFRGIYRKTFGRKAAQRVLRVGAHWMLPDDHEIINNFNFELVQKAFHD--VQSPLVSDT-KRERFVALQLHCRAGLQAYYEFQYQLYHD 309          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: K3WCI0_GLOUD (PhoD domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCI0_GLOUD)

HSP 1 Score: 91.7 bits (226), Expect = 5.990e-19
Identity = 55/158 (34.81%), Postives = 80/158 (50.63%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVETN--NVHLTVHLGDQIYAD---------HIPGE------QEESEGYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRHQFLA--RAGIQAFFEYQAQLTHE 417
            C+R+V+D+DD MW ++A  ++ +  +     HLGDQ+Y D          +P +      Q+  E Y   + +FR  Y  ++G  +A+R LR  A+ M+PDDHEV NNF           D     +  D +R H      RAG Q F+EYQ QL HE
Sbjct:   52 CDRYVDDKDDTMWTQIAADIDAHPHSYFGMAHLGDQVYVDAGAASIPIVSVPADMIRSQPQQLRERYERIVDQFRALYRETFGRPAAQRALRVGAHWMIPDDHEVINNFNLERVQAVLSIDNTEFEQEPDLERLHGLALHYRAGFQTFYEYQYQLQHE 209          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A6A3UCY2_9STRA (PhoD domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UCY2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.380e-18
Identity = 60/162 (37.04%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVE-------TNNVHLTV-HLGDQIYAD--------------HIPGEQEESEGYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQL 408
            C+RFV+D DD + +RLA  VE       +++VH  + HLGDQIYAD               +  ++     Y   L  FR  Y  ++G  +A+RVLR  A+ M+PDDHE+ NNF   +    F   G T +  S+E+R      Q   RAG+QA++E+Q QL
Sbjct:  147 CDRFVDDHDDVLMQRLATDVEEHDDALNSSSVHFGMAHLGDQIYADAGELSIKVTPLPLQEMADKKLRRARYEAILKEFRGIYRKTFGRKAAQRVLRIGAHWMIPDDHEIINNFNLELAQKAF--QGPTNSLLSEEERERFAALQLHCRAGLQAYYEFQYQL 306          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: A0A662YKB5_9STRA (PhoD domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YKB5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.500e-18
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVE-------TNNVHLTV-HLGDQIYADH-------IP---GEQEESE----GYCGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRHQFLA-RAGIQAFFEYQAQLTHE 417
            C+RFV+D DD ++E+LA  +E       +++VH  + HLGDQIYAD        +P    E E +E     Y   L +FR  Y  ++G  +A+RVLR  A+ M+PDDHE+ NNF        F      A+EA  E R    L  RAG+QA++E+Q QL  +
Sbjct:  160 CDRFVDDHDDVLFEKLARDIEVHDDATGSSSVHFGMAHLGDQIYADAGGPSIQVVPLPLAEMEVAEMRQARYDAILMQFRGIYRETFGRKAAQRVLRVGAHWMIPDDHEILNNFNYERVQQAF--QDTEASEAERERRMALSLHYRAGLQAYYEFQYQLQRD 319          
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Match: G4ZAK3_PHYSP (PhoD domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZAK3_PHYSP)

HSP 1 Score: 88.2 bits (217), Expect = 1.010e-17
Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 1
Query:    1 CNRFVEDQDDAMWERLAEQVETNN-------VHLTV-HLGDQIYADH---------IPGEQEESEGYCGT-----LARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPTFFSDGVTAAEASDEDRRH----QFLARAGIQAFFEYQAQLTHE 417
            C+R+V+D DD + +RLA  VE ++       VH  + HLGDQIYAD          +P ++ E + +        L  FR  Y  ++G  +A+RVLR  A+ M+PDDHE+ NNF   +    F   G   +  S+E+R      Q   RAG+QA++E+Q QL  E
Sbjct:  147 CDRYVDDHDDVLMQRLASDVEAHDYALDSPSVHFGMAHLGDQIYADAGELSIKVVALPLKEMEDKKFRRARFEEILNEFRGLYRETFGRKAAQRVLRIGAHWMIPDDHEIINNFNFELVQKAF--QGAKNSLLSEEERERFVALQLHCRAGLQAYYEFQYQLYRE 309          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99664.22908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
H3GQD9_PHYRM6.860e-2139.39PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A329STD8_9STRA9.580e-2136.97PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A3F2S533_9STRA2.700e-2039.39PhoD domain-containing protein n=3 Tax=Phytophthor... [more]
W2QTM5_PHYPN4.520e-2035.58PhoD domain-containing protein n=10 Tax=Phytophtho... [more]
A0A8J5IYU5_9STRA1.210e-1937.04PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
A0A2P4X538_9STRA3.400e-1938.55PhoD domain-containing protein n=1 Tax=Phytophthor... [more]
K3WCI0_GLOUD5.990e-1934.81PhoD domain-containing protein n=1 Tax=Globisporan... [more]
A0A6A3UCY2_9STRA1.380e-1837.04PhoD domain-containing protein n=3 Tax=Phytophthor... [more]
A0A662YKB5_9STRA2.500e-1838.89PhoD domain-containing protein n=2 Tax=Nothophytop... [more]
G4ZAK3_PHYSP1.010e-1736.36PhoD domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99664contigM-pyrifera_M_contig99664:19..435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.4e-18
Seed eggNOG ortholog164328.Phyra79003
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PhoD-like phosphatase
EggNOG OGs2CYDP@1,2S3RM@2759,3QABH@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.5475845-CDS-M-pyrifera_M_contig99664:18..4351622816913.5475845-CDS-M-pyrifera_M_contig99664:18..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99664 19..435 -
1692278252.2096286-CDS-M-pyrifera_M_contig99664:18..4351692278252.2096286-CDS-M-pyrifera_M_contig99664:18..435Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99664 19..435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99664.22908.1prot_M-pyrifera_M_contig99664.22908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99664 19..435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99664.22908.1

>prot_M-pyrifera_M_contig99664.22908.1 ID=prot_M-pyrifera_M_contig99664.22908.1|Name=mRNA_M-pyrifera_M_contig99664.22908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
CNRFVEDQDDAMWERLAEQVETNNVHLTVHLGDQIYADHIPGEQEESEGY
CGTLARFRRYYAISWGHSSAERVLRKSANCMLPDDHEVANNFAAAMWDPT
FFSDGVTAAEASDEDRRHQFLARAGIQAFFEYQAQLTHE
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mRNA from alignment at M-pyrifera_M_contig99664:19..435-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99664.22908.1 ID=mRNA_M-pyrifera_M_contig99664.22908.1|Name=mRNA_M-pyrifera_M_contig99664.22908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig99664:19..435- (Macrocystis pyrifera P11B4 male)
TGCAACAGGTTCGTCGAGGACCAGGACGACGCGATGTGGGAGCGCCTGGC CGAGCAGGTGGAGACTAATAACGTACACCTGACGGTCCACCTCGGCGACC AGATCTACGCAGACCACATCCCTGGCGAGCAGGAGGAGAGCGAAGGCTAC TGTGGGACGCTGGCGAGGTTTCGTCGCTACTACGCCATCAGCTGGGGCCA CAGCTCTGCAGAGAGGGTACTGAGGAAGAGCGCCAACTGCATGCTACCTG ACGACCACGAGGTGGCCAACAACTTTGCAGCGGCCATGTGGGACCCCACA TTCTTCTCTGACGGCGTTACCGCCGCTGAGGCCTCAGATGAGGACCGTCG GCATCAGTTTCTCGCCAGGGCGGGAATCCAAGCGTTTTTTGAGTACCAAG CACAGCTGACGCATGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99664:19..435-

>mRNA_M-pyrifera_M_contig99664.22908.1 ID=mRNA_M-pyrifera_M_contig99664.22908.1|Name=mRNA_M-pyrifera_M_contig99664.22908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig99664:19..435- (Macrocystis pyrifera P11B4 male)
TGCAACAGGTTCGTCGAGGACCAGGACGACGCGATGTGGGAGCGCCTGGC
CGAGCAGGTGGAGACTAATAACGTACACCTGACGGTCCACCTCGGCGACC
AGATCTACGCAGACCACATCCCTGGCGAGCAGGAGGAGAGCGAAGGCTAC
TGTGGGACGCTGGCGAGGTTTCGTCGCTACTACGCCATCAGCTGGGGCCA
CAGCTCTGCAGAGAGGGTACTGAGGAAGAGCGCCAACTGCATGCTACCTG
ACGACCACGAGGTGGCCAACAACTTTGCAGCGGCCATGTGGGACCCCACA
TTCTTCTCTGACGGCGTTACCGCCGCTGAGGCCTCAGATGAGGACCGTCG
GCATCAGTTTCTCGCCAGGGCGGGAATCCAAGCGTTTTTTGAGTACCAAG
CACAGCTGACGCATGAATGCAACAGGTTCGTCGAGGACCAGGACGACGCG
ATGTGGGAGCGCCTGGCCGAGCAGGTGGAGACTAATAACGTACACCTGAC
GGTCCACCTCGGCGACCAGATCTACGCAGACCACATCCCTGGCGAGCAGG
AGGAGAGCGAAGGCTACTGTGGGACGCTGGCGAGGTTTCGTCGCTACTAC
GCCATCAGCTGGGGCCACAGCTCTGCAGAGAGGGTACTGAGGAAGAGCGC
CAACTGCATGCTACCTGACGACCACGAGGTGGCCAACAACTTTGCAGCGG
CCATGTGGGACCCCACATTCTTCTCTGACGGCGTTACCGCCGCTGAGGCC
TCAGATGAGGACCGTCGGCATCAGTTTCTCGCCAGGGCGGGAATCCAAGC
GTTTTTTGAGTACCAAGCACAGCTGACGCATGAA
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