mRNA_M-pyrifera_M_contig9966.22905.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9966.22905.1
Unique NamemRNA_M-pyrifera_M_contig9966.22905.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9966.22905.1 vs. uniprot
Match: D7FTM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM9_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.000e-45
Identity = 96/175 (54.86%), Postives = 118/175 (67.43%), Query Frame = 1 
Query:    1 PARAEAQTQTPRTHQHPLGCMFFPELDKAGVLEVVSEVLCKPGYTSGPSEEKRLLRSVGSGRVDIRTMARLLRWLRGDRAARELRDRGLKFVGPSTEAVLRPITTGLGMTRLTNEVAACGYQAGTQFVVCFSSNYDACSGVISGVLTAATQEPRSESDSKSE--TVAESTPTLSG 519
            P   EA  Q  +  + PLG MF PELDK+GV+ VVSE+LC+PG+T GP +E+RL RSV SGR+D+  M+RLLRWL G RAAREL +RG++FV P  +    P T+G GMTRL  EV A G+ AGT FVVCFSS +DACS  I G L      P S SDS S+  T AE  P+ +G
Sbjct:   89 PTGEEAGIQDSQRDESPLGFMFRPELDKSGVVAVVSEILCRPGFTVGPDDERRLKRSVESGRIDVHNMSRLLRWLAGRRAARELSERGIEFVVPRAQ----PYTSGQGMTRLMEEVVARGHPAGTNFVVCFSSRFDACSAAIRGRLINE-DVPVSPSDSVSDAPTTAEPGPSCAG 258
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9966.22905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM9_ECTSI2.000e-4554.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9966contigM-pyrifera_M_contig9966:5882..10587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_008890.1
Exons3
Model size975
Cds size975
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9966.22905.1prot_M-pyrifera_M_contig9966.22905.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9966 5882..10587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.4028218-CDS-M-pyrifera_M_contig9966:5881..62261622816913.4028218-CDS-M-pyrifera_M_contig9966:5881..6226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 5882..6226 +
1692278252.1145477-CDS-M-pyrifera_M_contig9966:5881..62261692278252.1145477-CDS-M-pyrifera_M_contig9966:5881..6226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 5882..6226 +
1622816913.418307-CDS-M-pyrifera_M_contig9966:9716..99551622816913.418307-CDS-M-pyrifera_M_contig9966:9716..9955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 9717..9955 +
1692278252.1304512-CDS-M-pyrifera_M_contig9966:9716..99551692278252.1304512-CDS-M-pyrifera_M_contig9966:9716..9955Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 9717..9955 +
1622816913.430692-CDS-M-pyrifera_M_contig9966:10196..105871622816913.430692-CDS-M-pyrifera_M_contig9966:10196..10587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 10197..10587 +
1692278252.1391795-CDS-M-pyrifera_M_contig9966:10196..105871692278252.1391795-CDS-M-pyrifera_M_contig9966:10196..10587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9966 10197..10587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9966.22905.1

>prot_M-pyrifera_M_contig9966.22905.1 ID=prot_M-pyrifera_M_contig9966.22905.1|Name=mRNA_M-pyrifera_M_contig9966.22905.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=325bp
PARAEAQTQTPRTHQHPLGCMFFPELDKAGVLEVVSEVLCKPGYTSGPSE
EKRLLRSVGSGRVDIRTMARLLRWLRGDRAARELRDRGLKFVGPSTEAVL
RPITTGLGMTRLTNEVAACGYQAGTQFVVCFSSNYDACSGVISGVLTAAT
QEPRSESDSKSETVAESTPTLSGGGCGGGGRRSDQTSVASTLSPQRTPHP
SRRKRTPSHGSRASRSGSGIGGGIGGGSNNSKGRDCSRSDVVAHLFDERP
THSRGGGVGDSGSASGGGAAAAGGGGGGGCVDASEGGGVSEMEVGEWAKL
YGECDGPLLAAWVFPAGDASRPAE*
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mRNA from alignment at M-pyrifera_M_contig9966:5882..10587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9966.22905.1 ID=mRNA_M-pyrifera_M_contig9966.22905.1|Name=mRNA_M-pyrifera_M_contig9966.22905.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4706bp|location=Sequence derived from alignment at M-pyrifera_M_contig9966:5882..10587+ (Macrocystis pyrifera P11B4 male)
CCGGCGAGAGCTGAAGCTCAGACACAGACACCGAGAACGCACCAGCACCC
ACTGGGGTGCATGTTCTTCCCGGAGCTCGACAAGGCGGGTGTGCTCGAAG
TGGTATCGGAGGTTCTCTGCAAGCCCGGGTACACGTCGGGACCGTCGGAA
GAAAAGCGGTTGCTGAGGAGCGTCGGGTCGGGGCGCGTCGACATCCGGAC
CATGGCACGGCTGCTGCGCTGGCTGAGGGGGGACCGCGCGGCGCGGGAGC
TGAGGGACCGCGGGCTGAAGTTCGTCGGTCCGAGCACGGAGGCGGTGCTT
CGGCCTATCACGACGGGGCTGGGGATGACCCGCCTGACCAACGAGGTGAG
GAACAAATGCTATTCATACTACGTACTACGTACCTGGTATTTGTGTTCTT
ATTTCAAACTGTTTCATGCAACAGGTAGGACGAGCCTCATCGTGTTCACT
CGAATCGCTATTTTGATATTATTATTTCGCTCGCCAACTCAAACCGCGCT
AACTGACAAAATGCGGACGTGATTTTTTTAGCATCGAGTTCGTATCATAC
CGCTGTTCCACAGCTAAAGCATGCCTGTCTTCCAGCAGCAGTACCAGAGG
TGTATCTCATCAGCAATCCCATGCTTCCCGTGATTTTGCCCCTTTGCCCC
ATGCTTGAAAACTTTGCACCCCCCTTGTCCCAACGATTGCTCTGCCGCCT
ATATTTTTTGTGGTGTGATGATGTACCTGATACTTTAACTCCTTTAGTAC
CGCAGTCCCGCTTTGGGTACAAACCAGTCTAATTCCAAGTGATTTGTCCC
CAAAACGAGACTGCGGCACTAAAAGGGTTAATACTATTGTACAACGTACT
CCTCCAACTAAACTTGAACATGGTTTTTACTACTCAGCACGATCATTTTG
ATATTTGATATTTGCACTGAGCGCAGCGAGAACATGATGAGCAAGATTTG
ATTCGGCCGCCGACGCGCACCAAATACGAACTATTAACACAAGTCAGCAC
GAGCAGTAAGAACGGTATGGGCCCGCCAACAAGAAGCGCCTAATCTGGGC
AAGCCTGAGATTCTTATGGGGGGCGCCATCTTCAAAAAATCCTTGAGCAC
AGGCTAGTACTCGTTATACTACTAGATTTATTCGAGACCTCACCACCGAG
CCGTTTTTCTTGACGTAATTTTCGTAGCGTTCTCCAAAAAAGTGAGCATT
GATGTTCTTGTCGGGCACTTTCTTCCTGGCGGACCAACTGTACCGGTACC
TTCGCCGGCAACGCGGGATGCCGACTGCTCTACTGATCACCGATACTGAT
ACCGGGCGGAAATGTAAGGACTGCTGTTTGGTCTTCTTGTTGATTTTGAA
ACGCTCCTTAATAATATTCTTCCGTCTAGAGTGGTCTGTGGTATGTAACT
GATGCCATACATACATCGCCCTACAGCAGTTCTACGTCGTGATCATGGTA
CAACGTACAGCAGTAGTAGTATCGGATGCGTTTTCTTTCAGCCGTTCGCC
CTTGACCCTAGAACTTGAGTGGTCTACACGGGACTGCAGTCCTACGAAAC
GAAGCACCACCAACGAACGACGACCAGATACAGTAACCGGATAATAAGAA
ATACGTTACAGTCAGCACCAACGTACGAACCACCACCCCAACACCACAGC
AAGCAGTATTTACTGCCACTGCTGTAGTTTTTTACCCGCGTTCGTGGTTC
TTTATTACTCCGACCGAGTTGCTCATTGGCGCCGGGCCGCCGCCGCTGCG
GAAGGAGTTTATGACTTTGAGCTTACTTTACTTATAGGAGCTATACATGC
CGTGACCCCGAGACGTAAATACGACCATGATGCCCTACTGCATTGGTGCA
GCTGTTGGTGTACTTGAAAACAGCGCACTCGTGAAGGTTAGGGCTTAAAT
CTACGCGCGCGCCGGGAGGCCGGGAGGGGGGGGGGTGCTGAAGCCCAAAA
CTCGAAACTGGAGGTTCTTCAGTGCTAAACCCACCGTAAAATAATACCAG
GTACCAGGTATCGTACTTCTGTTGCCGCTGTATAGACGAGCCGCTACGAG
TAGCCGCAAGATTGTCCTAATCGAATTCCGCGCTGTGCGTTCTTCTCTTT
TTGTGGTGCGATGTATGATAGTCTCAGTATATTTTATTCGCTGGAGTTGA
CTCTCTGCAAGTGTAACGGACAGACTACTGCTCTTATCCTCTTATAACCT
CCTGCCAGTCGCGCTGGATTTCGCACCTCGGCCGGTGTTTGTCATTGTTT
TCACAAGCGGGCTTGCTGAATGTGCGGGAGAGAGGGTGCGAGTTGGAGCA
AACAACTCGCTGAAAACCGACGAGCAGTAGGAATTCTACTCTAGACCGTC
CCGTATGGGCTTCCTTACGAGGTATTCGTAGTGACAAAAAGGCCGCCCTT
CGCAATTTTTAGCGCCATTCCTTCGAGAACTATACGCGAGGTTCCTTTAT
TAATAGTATTTTTACAGTAATATTTATGACACTTTTGAGTAATTGTAGCT
GCCTCTCCTATCATATTGATAAAGGAGGTTATACAGGAGCTCTTAACCCT
TTCATTTAATAGTACTGCTGTCCCGTTGTGGTGACTAAAATTACTTATAT
TAACAGAAGAAGTACTTATTTGGTTTTGTCCCGAAAATGGGACGGCAGTC
CTAAAAGAAACGATATGTGTTTTGCGGTTTTTGGTGCTTTGATGCATGAG
AAGCGTGGACGAGCCGCATTCCCTAAAAAATCCGAGCCCGCCCGCCACGT
GGAATTTTATTTGCTGTACACGATGGAAGAATAAGAATTACGAACGCGGA
CCTCTGCTGTTTTTTTTTTACGCCAGGCCAGGTGCAATATGACCGTAAAC
ACACACCTCATATTGAATCCACAGCTTTATATCCCCCGTACTTGGTGCAG
GTACGATATCATACTTACGAACGATAGTGAGTCAGTCTTGCTTCATTTTT
TTTGTCACTTGTTATTTTTTTTCCCAGAGACGAGACCACAGAGTCCCTCT
CTCATTCTTGAAACTTGCTTCTTGACTGTTTTTCAGTAGTGGCTGCCCCC
AGATAGTGGATCTTCCCAAGGTAGGCTATTTACGCACTCTGATTGGCTAA
GGGGTGTTTTGTAAGCGGCCCTACCAACCTGTTATTAATAGTAGAGTTTT
TCCAAGCCACAGCATCCCGAGCCGGCCAAATAAGCCTAGAGTCTTTCCAA
GCACAGCATCCAAGCCGGCCGAATCAACCTAGAGATTTCACACGCCACAG
CATCCAAGCACTGGTCGCCCCATAGCGTTCGGGTTCGGGTTCGGGTTAGG
GTTCGGGCCGAAAAACCCGGAAATATTAACTATCAGGGTGCAACCACGGC
TCTTATTTTTCCCAATAAAAAATATATACCACGTACACACAAGAAATATG
CACAAAAATCGCGCTTGAATGCGAGTAGGTACTATCTACAAAATAGTAGA
CTCGTAGTCTTCCCGCAAGTGAAGAGGTCTGATGGTGTCGTGATATAGAC
TACCAATTCCGAACTCCGCGTTGAAGTTCATATTGGCCCGGCATAGTTTT
TGCTGCACCCCGTGAGCCCTTGACGTCTGCGAGTGGCCCATCGCGCCGAG
TCGTGAGCGTCCTCTGCTTTCCGTCTGCTTTACACTTTGTTCATATCTGT
TTCCTTGAGCAAGCGCACCGGGTGGCGTATAGCCGCCCGCGGAACGCAGC
CTTGTAACTCTTACTTGGTATTATAGTATCGAATTTCCGATATGTGTGCT
TATATGTACATGCGTGCGTTCGTCTTACCCCTCCACTCCCCGCCCCCCCC
CTCCCACCCACCCCCGCCCCCGCCCCTCCACACAGGTGGCTGCCTGCGGC
TATCAGGCCGGGACCCAGTTCGTCGTGTGCTTCTCTTCCAACTACGATGC
ATGCTCGGGCGTTATCTCCGGCGTGCTCACCGCCGCTACCCAAGAGCCAC
GATCCGAATCGGATTCCAAGTCAGAAACCGTCGCTGAATCTACCCCAACT
TTGAGCGGCGGTGGCTGCGGCGGCGGCGGTCGTCGTTCCGATCAGACGAG
CGTTGCGTCCACGCTCTCGCCCCAGTCAGGCCAAGGAGCACCATGGAGCA
CCTCCACCCCCGCCTCCTCCCTATCCTCTTGCCCCCCCCCCCCGCTCCAG
AGCATCGGGAGCATCGGGGAAGGAGCGCGCTGCTAGTTCGCCAGCGCGAG
CGAGCGCCGTGCCGTCTGCCCCCCGCGTTGCAAGCGAAACAAGCGGAAAG
GGAATCACCATCACCGCCGGCGGCGGCGGAGGCGGCGGCGGCGATCCTGC
GCCACGCCCCAGCAGGCGTACGCCACACCCCTCCCGCAGGAAGCGTACAC
CCTCCCACGGCAGCCGCGCCTCCCGCAGCGGCAGTGGCATCGGCGGGGGC
ATCGGCGGGGGCAGCAACAACAGCAAAGGAAGAGACTGCAGCCGGAGCGA
CGTGGTGGCGCACCTGTTCGACGAGAGGCCGACGCATAGCCGAGGCGGCG
GCGTCGGCGACAGTGGCAGCGCTAGCGGCGGTGGCGCGGCTGCAGCTGGT
GGCGGGGGCGGTGGCGGCTGTGTCGACGCTAGTGAAGGAGGGGGCGTTTC
CGAGATGGAGGTGGGGGAATGGGCCAAGCTCTACGGGGAGTGCGACGGGC
CGTTGCTAGCCGCCTGGGTTTTTCCGGCCGGCGATGCCTCCAGGCCGGCG
GAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9966:5882..10587+

>mRNA_M-pyrifera_M_contig9966.22905.1 ID=mRNA_M-pyrifera_M_contig9966.22905.1|Name=mRNA_M-pyrifera_M_contig9966.22905.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1950bp|location=Sequence derived from alignment at M-pyrifera_M_contig9966:5882..10587+ (Macrocystis pyrifera P11B4 male)
CCGGCGAGAGCTGAAGCTCAGACACAGACACCGAGAACGCACCAGCACCC
ACTGGGGTGCATGTTCTTCCCGGAGCTCGACAAGGCGGGTGTGCTCGAAG
TGGTATCGGAGGTTCTCTGCAAGCCCGGGTACACGTCGGGACCGTCGGAA
GAAAAGCGGTTGCTGAGGAGCGTCGGGTCGGGGCGCGTCGACATCCGGAC
CATGGCACGGCTGCTGCGCTGGCTGAGGGGGGACCGCGCGGCGCGGGAGC
TGAGGGACCGCGGGCTGAAGTTCGTCGGTCCGAGCACGGAGGCGGTGCTT
CGGCCTATCACGACGGGGCTGGGGATGACCCGCCTGACCAACGAGCCGGC
GAGAGCTGAAGCTCAGACACAGACACCGAGAACGCACCAGCACCCACTGG
GGTGCATGTTCTTCCCGGAGCTCGACAAGGCGGGTGTGCTCGAAGTGGTA
TCGGAGGTTCTCTGCAAGCCCGGGTACACGTCGGGACCGTCGGAAGAAAA
GCGGTTGCTGAGGAGCGTCGGGTCGGGGCGCGTCGACATCCGGACCATGG
CACGGCTGCTGCGCTGGCTGAGGGGGGACCGCGCGGCGCGGGAGCTGAGG
GACCGCGGGCTGAAGTTCGTCGGTCCGAGCACGGAGGCGGTGCTTCGGCC
TATCACGACGGGGCTGGGGATGACCCGCCTGACCAACGAGGTGGCTGCCT
GCGGCTATCAGGCCGGGACCCAGTTCGTCGTGTGCTTCTCTTCCAACTAC
GATGCATGCTCGGGCGTTATCTCCGGCGTGCTCACCGCCGCTACCCAAGA
GCCACGATCCGAATCGGATTCCAAGTCAGAAACCGTCGCTGAATCTACCC
CAACTTTGAGCGGCGGTGGCTGCGGCGGCGGCGGTCGTCGTTCCGATCAG
ACGAGCGTTGCGTCCACGCTCTCGCCCCAGTGGCTGCCTGCGGCTATCAG
GCCGGGACCCAGTTCGTCGTGTGCTTCTCTTCCAACTACGATGCATGCTC
GGGCGTTATCTCCGGCGTGCTCACCGCCGCTACCCAAGAGCCACGATCCG
AATCGGATTCCAAGTCAGAAACCGTCGCTGAATCTACCCCAACTTTGAGC
GGCGGTGGCTGCGGCGGCGGCGGTCGTCGTTCCGATCAGACGAGCGTTGC
GTCCACGCTCTCGCCCCAGCGTACGCCACACCCCTCCCGCAGGAAGCGTA
CACCCTCCCACGGCAGCCGCGCCTCCCGCAGCGGCAGTGGCATCGGCGGG
GGCATCGGCGGGGGCAGCAACAACAGCAAAGGAAGAGACTGCAGCCGGAG
CGACGTGGTGGCGCACCTGTTCGACGAGAGGCCGACGCATAGCCGAGGCG
GCGGCGTCGGCGACAGTGGCAGCGCTAGCGGCGGTGGCGCGGCTGCAGCT
GGTGGCGGGGGCGGTGGCGGCTGTGTCGACGCTAGTGAAGGAGGGGGCGT
TTCCGAGATGGAGGTGGGGGAATGGGCCAAGCTCTACGGGGAGTGCGACG
GGCCGTTGCTAGCCGCCTGGGTTTTTCCGGCCGGCGATGCCTCCAGGCCG
GCGGAGTGAGCGTACGCCACACCCCTCCCGCAGGAAGCGTACACCCTCCC
ACGGCAGCCGCGCCTCCCGCAGCGGCAGTGGCATCGGCGGGGGCATCGGC
GGGGGCAGCAACAACAGCAAAGGAAGAGACTGCAGCCGGAGCGACGTGGT
GGCGCACCTGTTCGACGAGAGGCCGACGCATAGCCGAGGCGGCGGCGTCG
GCGACAGTGGCAGCGCTAGCGGCGGTGGCGCGGCTGCAGCTGGTGGCGGG
GGCGGTGGCGGCTGTGTCGACGCTAGTGAAGGAGGGGGCGTTTCCGAGAT
GGAGGTGGGGGAATGGGCCAAGCTCTACGGGGAGTGCGACGGGCCGTTGC
TAGCCGCCTGGGTTTTTCCGGCCGGCGATGCCTCCAGGCCGGCGGAGTGA
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