mRNA_M-pyrifera_M_contig99567.22895.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99567.22895.1
Unique NamemRNA_M-pyrifera_M_contig99567.22895.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A2P6N3C1_9EUKA (RING-type domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3C1_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 3.600e-10
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNF----NRDALQRSIEDGLKRQLLARKREEYALRKKRKLTVSPSSP 276
            +ECP+CRVK  S R LRADPRFD ++  +   D++ FE  Q +A  EI KN     ++  L +S+E+G KRQ LARK+ +     KRK      SP
Sbjct:   81 KECPACRVKCISRRQLRADPRFDRIISAVYS-DLDSFEATQDQATEEIAKNAISIGSKSILLQSMEEGKKRQALARKQSQ-----KRKSFEDEESP 170          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: UPI0003F0BC74 (E3 ubiquitin-protein ligase RING2-A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0BC74)

HSP 1 Score: 61.2 bits (147), Expect = 7.100e-9
Identity = 33/72 (45.83%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFNRDALQRSIEDGLKRQLLAR 216
            +ECP+CR K+ S R LR DP FD L+ K+     E +E  Q + +A +N++ N+ ALQ SIE+GLK Q + R
Sbjct:   86 KECPTCRKKLVSRRSLRPDPNFDALISKIYPSRDE-YEAQQEKLLARLNQHHNQQALQNSIEEGLKLQAMNR 156          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A7S2H2K0_9STRA (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H2K0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.120e-9
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFN-RDALQRSIEDGLKRQLLARKR 222
            +ECPSCR+ +PS R LR DP FDDL+  + G D++  ED + + +  +NK  N  +A   S + G+ +Q + RK+
Sbjct:   54 KECPSCRIHIPSRRSLRPDPNFDDLINNIYG-DIDALEDYEEKEIENLNKAKNMNNAYAESRKRGIMQQAIHRKK 127          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A7S1B451_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B451_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.140e-8
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINK 150
            RECPSCRV +PS R LR D  FD L+ K+ G D+++ E  + EAVA +NK
Sbjct:  337 RECPSCRVHIPSRRSLRRDDAFDSLMRKIYGNDLDKVEKHEEEAVAAVNK 386          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A7S4RPC5_9STRA (RING-type E3 ubiquitin transferase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RPC5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.900e-8
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFN-RDALQRSIEDGLKRQLLARKR 222
            +ECPSCR+ +PS R LR DP FDDL+  + G D++  ED + + +  +NK  N  +A   S + G+ +Q + RK+
Sbjct:  144 KECPSCRIHIPSRRSLRPDPNFDDLINNIYG-DIDALEDYEEKEIENLNKAKNMNNAYAESRKRGIMQQAIHRKK 217          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A1P6BFJ5_BRUMA (RING-type E3 ubiquitin transferase n=13 Tax=Onchocercidae TaxID=6296 RepID=A0A1P6BFJ5_BRUMA)

HSP 1 Score: 57.8 bits (138), Expect = 1.350e-7
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFNRDALQRSIEDGLKRQLLARKRE-----EYALRKKRKLTVSPSSPLH 282
            +ECP+CR K+ S R LR DP FD L+ K+   D + +E +Q +A+   ++  N +ALQ+SIE G+K Q   R++      +Y  RK+R     P S +H
Sbjct:   84 KECPTCRKKLVSKRSLRPDPNFDALINKIWP-DRQIYEQMQQKAMEMFHQQSNVEALQKSIEAGMKAQAANRRQRVQGSYDYEKRKRR-----PRSDVH 176          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A0N4TP75_BRUPA (RING-type E3 ubiquitin transferase n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4TP75_BRUPA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-7
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFNRDALQRSIEDGLKRQLLARKRE-----EYALRKKRKLTVSPSSPLH 282
            +ECP+CR K+ S R LR DP FD L+ K+   D + +E +Q +A+   ++  N +ALQ+SIE G+K Q   R++      +Y  RK+R     P S +H
Sbjct:  154 KECPTCRKKLVSKRSLRPDPNFDALINKIWP-DRQIYEQMQQKAMEMFHQQSNVEALQKSIEAGMKAQAANRRQRVQGSYDYEKRKRR-----PRSDVH 246          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A7S2H2F0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H2F0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.490e-7
Identity = 29/75 (38.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFN-RDALQRSIEDGLKRQLLARKR 222
            +ECPSCR+ VPS R LR D  FD L+ ++    +E +E+ + + ++++NKN N  +A  +S   GL+ QL  R++
Sbjct:   85 KECPSCRIHVPSRRSLRYDANFDSLIARIYPN-LEEYEEHEEKMISDLNKNRNLNNAFTQSCRQGLRNQLQHRRK 158          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A183EL53_9BILA (RING-type E3 ubiquitin transferase n=1 Tax=Gongylonema pulchrum TaxID=637853 RepID=A0A183EL53_9BILA)

HSP 1 Score: 56.6 bits (135), Expect = 3.330e-7
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFNRDALQRSIEDGLKRQLLARKRE-----EYALRKKR 249
            +ECP+CR K+ S R LR DP FD L+ K+   D + +E +Q +A+   ++  N +ALQ+SIE G+K Q   R++      +Y  RK+R
Sbjct:  116 KECPTCRKKLVSKRSLRPDPNFDALINKIWP-DRQIYEQMQQKAMEMFHQQSNVEALQKSIEAGMKAQAANRRQRVQGSYDYEKRKRR 202          
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Match: A0A0B2W058_TOXCA (RING-type E3 ubiquitin transferase n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2W058_TOXCA)

HSP 1 Score: 55.5 bits (132), Expect = 8.790e-7
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINKNFNRDALQRSIEDGLKRQLLARK 219
            +ECP+CR K+ S R LR DP FD L+ K+   D + +E +Q +A+   ++  N +ALQ+SIE G+K Q   R+
Sbjct:   85 KECPTCRKKLVSKRSLRPDPNFDALINKIWP-DRQIYEQMQQKAMDMFHQQSNVEALQKSIEAGMKAQAANRR 156          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99567.22895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6N3C1_9EUKA3.600e-1043.75RING-type domain-containing protein n=1 Tax=Planop... [more]
UPI0003F0BC747.100e-945.83E3 ubiquitin-protein ligase RING2-A-like n=1 Tax=S... [more]
A0A7S2H2K0_9STRA7.120e-940.00RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A7S1B451_9STRA2.140e-854.00Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4RPC5_9STRA4.900e-840.00RING-type E3 ubiquitin transferase n=2 Tax=Ditylum... [more]
A0A1P6BFJ5_BRUMA1.350e-738.38RING-type E3 ubiquitin transferase n=13 Tax=Onchoc... [more]
A0A0N4TP75_BRUPA1.420e-738.38RING-type E3 ubiquitin transferase n=1 Tax=Brugia ... [more]
A0A7S2H2F0_9STRA1.490e-738.67RING-type E3 ubiquitin transferase n=1 Tax=Dictyoc... [more]
A0A183EL53_9BILA3.330e-739.77RING-type E3 ubiquitin transferase n=1 Tax=Gongylo... [more]
A0A0B2W058_TOXCA8.790e-742.47RING-type E3 ubiquitin transferase n=2 Tax=Toxocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99567contigM-pyrifera_M_contig99567:5..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog10224.XP_006816569.1
Preferred nameSce
KEGG koko:K10695
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000152,GO:0000228,GO:0000785,GO:0000790,GO:0000902,GO:0000904,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005730,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006513,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008270,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010390,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0016043,GO:0016333,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0030154,GO:0030707,GO:0030708,GO:0030713,GO:0030855,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031519,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0033522,GO:0035102,GO:0035518,GO:0036211,GO:0040029,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045498,GO:0045814,GO:0045892,GO:0045934,GO:0046872,GO:0046914,GO:0048138,GO:0048139,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0060255,GO:0060429,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.histone H2A monoubiquitination
EggNOG OGs38K78@33154,3BESD@33208,3CRNC@33213,KOG0311@1,KOG0311@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-20_004640.1
EC2.3.2.27
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.8578036-CDS-M-pyrifera_M_contig99567:4..3011622816912.8578036-CDS-M-pyrifera_M_contig99567:4..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99567 5..301 +
1692278251.7554972-CDS-M-pyrifera_M_contig99567:4..3011692278251.7554972-CDS-M-pyrifera_M_contig99567:4..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99567 5..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99567.22895.1prot_M-pyrifera_M_contig99567.22895.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99567 5..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99567.22895.1

>prot_M-pyrifera_M_contig99567.22895.1 ID=prot_M-pyrifera_M_contig99567.22895.1|Name=mRNA_M-pyrifera_M_contig99567.22895.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
RECPSCRVKVPSHRYLRADPRFDDLVCKLLGGDVERFEDIQSEAVAEINK
NFNRDALQRSIEDGLKRQLLARKREEYALRKKRKLTVSPSSPLHHFGQ*
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mRNA from alignment at M-pyrifera_M_contig99567:5..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99567.22895.1 ID=mRNA_M-pyrifera_M_contig99567.22895.1|Name=mRNA_M-pyrifera_M_contig99567.22895.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig99567:5..301+ (Macrocystis pyrifera P11B4 male)
AGGGAGTGCCCCTCGTGCAGAGTGAAGGTCCCCTCGCACCGCTACCTCAG GGCAGACCCCCGTTTCGACGACCTGGTCTGCAAGCTGCTGGGAGGAGACG TGGAGAGGTTCGAGGATATCCAGAGTGAAGCAGTGGCAGAGATCAACAAG AATTTCAACCGCGACGCTCTGCAGCGGAGCATCGAGGACGGCCTCAAGCG CCAGCTGCTCGCCAGGAAGCGCGAGGAGTACGCCCTCCGCAAGAAGCGGA AGCTCACGGTGAGTCCATCTTCTCCATTGCACCACTTTGGGCAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99567:5..301+

>mRNA_M-pyrifera_M_contig99567.22895.1 ID=mRNA_M-pyrifera_M_contig99567.22895.1|Name=mRNA_M-pyrifera_M_contig99567.22895.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig99567:5..301+ (Macrocystis pyrifera P11B4 male)
AGGGAGTGCCCCTCGTGCAGAGTGAAGGTCCCCTCGCACCGCTACCTCAG
GGCAGACCCCCGTTTCGACGACCTGGTCTGCAAGCTGCTGGGAGGAGACG
TGGAGAGGTTCGAGGATATCCAGAGTGAAGCAGTGGCAGAGATCAACAAG
AATTTCAACCGCGACGCTCTGCAGCGGAGCATCGAGGACGGCCTCAAGCG
CCAGCTGCTCGCCAGGAAGCGCGAGGAGTACGCCCTCCGCAAGAAGCGGA
AGCTCACGGTGAGTCCATCTTCTCCATTGCACCACTTTGGGCAGTAGAGG
GAGTGCCCCTCGTGCAGAGTGAAGGTCCCCTCGCACCGCTACCTCAGGGC
AGACCCCCGTTTCGACGACCTGGTCTGCAAGCTGCTGGGAGGAGACGTGG
AGAGGTTCGAGGATATCCAGAGTGAAGCAGTGGCAGAGATCAACAAGAAT
TTCAACCGCGACGCTCTGCAGCGGAGCATCGAGGACGGCCTCAAGCGCCA
GCTGCTCGCCAGGAAGCGCGAGGAGTACGCCCTCCGCAAGAAGCGGAAGC
TCACGGTGAGTCCATCTTCTCCATTGCACCACTTTGGGCAGTAG
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