mRNA_M-pyrifera_M_contig99555.22893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99555.22893.1
Unique NamemRNA_M-pyrifera_M_contig99555.22893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7X6NYR2_9ACTN (Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NYR2_9ACTN)

HSP 1 Score: 241 bits (616), Expect = 2.480e-76
Identity = 124/145 (85.52%), Postives = 132/145 (91.03%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADAKA 435
            FENGRLQTAARA+GVMQAAYEAA EYA  RKVFG P+ +YQLTQAKL RMA  IQASRQFAY V  LMAKGEGK+EA+LIKAYVCKAAEWV+REA+QIHGGMGYAEEYDVSRY+VDARVLSIFEGADETLCLKVIAR LVAD KA
Sbjct:  272 FENGRLQTAARALGVMQAAYEAAEEYANERKVFGQPVGEYQLTQAKLARMAITIQASRQFAYDVARLMAKGEGKLEASLIKAYVCKAAEWVSREAMQIHGGMGYAEEYDVSRYWVDARVLSIFEGADETLCLKVIARQLVADHKA 416          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: UPI001C62DF66 (acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62DF66)

HSP 1 Score: 244 bits (623), Expect = 4.350e-76
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADA 429
            FENGR+QTAARA+GVMQAAYEAA +YA +RKVFG PI +YQLTQAKL RMA +IQASRQFAY V  LMAKGEG MEATLIKAYVCKAAEWVTREA+QIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLC+KVIAR LVADA
Sbjct:  393 FENGRIQTAARAIGVMQAAYEAARQYAVDRKVFGQPISEYQLTQAKLGRMATVIQASRQFAYVVARLMAKGEGAMEATLIKAYVCKAAEWVTREAMQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCIKVIARKLVADA 535          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7W0KTS7_9ACTN (Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0KTS7_9ACTN)

HSP 1 Score: 240 bits (612), Expect = 4.810e-76
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADA 429
            FENGRLQTAARA+GVMQAAYEAA  YA +RKVFGSPI DYQLTQAKL RMA IIQASRQF+Y V +LMAKGEG  EA++IKAYVCKAAEWVTREA+QIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIAR LVA+A
Sbjct:  252 FENGRLQTAARAIGVMQAAYEAAQAYAVDRKVFGSPIGDYQLTQAKLGRMAVIIQASRQFSYVVSKLMAKGEGAAEASMIKAYVCKAAEWVTREAMQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARKLVANA 394          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7W0LR00_9ACTN (Acyl-CoA dehydrogenase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LR00_9ACTN)

HSP 1 Score: 234 bits (596), Expect = 8.300e-76
Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADA 429
            FENGRLQTAARAVGVMQAAYEAA+ YAE+RKVFG  + DYQLTQ KL RMA IIQA+RQF+Y V  +MAKGEG +EA+++KAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLK+IAR L+  A
Sbjct:   84 FENGRLQTAARAVGVMQAAYEAAVAYAEDRKVFGQAVGDYQLTQVKLARMAVIIQAARQFSYAVARMMAKGEGALEASMVKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKIIARRLLERA 226          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7Y2GSG9_9ACTN (Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GSG9_9ACTN)

HSP 1 Score: 243 bits (621), Expect = 9.730e-76
Identity = 124/144 (86.11%), Postives = 135/144 (93.75%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADAK 432
            FENGR+QTAARAVGVMQAAYEAA EYAENR VFG PI DYQLT+AKLTRMAAIIQASRQF+Y VG +MAKGEGKMEA++IKA+VCKA+EWVTREA+QIHGGMGYAEEYDVSRYFVDARVLSIFEGADETL LKVIAR+LV  A+
Sbjct:  395 FENGRIQTAARAVGVMQAAYEAAKEYAENRVVFGRPIADYQLTRAKLTRMAAIIQASRQFSYQVGTMMAKGEGKMEASMIKAFVCKASEWVTREAMQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLTLKVIARTLVKQAQ 538          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7V9NUN9_9ACTN (Acyl-CoA dehydrogenase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NUN9_9ACTN)

HSP 1 Score: 236 bits (602), Expect = 9.310e-75
Identity = 121/143 (84.62%), Postives = 130/143 (90.91%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADA 429
            FENGRLQTAARA+GVMQAAYEAA +YA NRKVFGSPI DYQLTQAKLTRMAA IQA+RQF+Y V  LMAKG+G MEA+L+KAYVC+AAEWVTREALQIHGGMGYAEE+ VSRYFVDARVLSIFEGADETL LKVIAR LV  A
Sbjct:  232 FENGRLQTAARAIGVMQAAYEAAADYAANRKVFGSPIADYQLTQAKLTRMAATIQATRQFSYQVARLMAKGQGSMEASLVKAYVCRAAEWVTREALQIHGGMGYAEEFPVSRYFVDARVLSIFEGADETLTLKVIARRLVEAA 374          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7K0UR66_9ACTN (Acyl-CoA dehydrogenase n=2 Tax=root TaxID=1 RepID=A0A7K0UR66_9ACTN)

HSP 1 Score: 228 bits (580), Expect = 8.440e-74
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADAKA 435
            FENGRLQTAARAVGVMQAAYEAA++Y++NRK FG+ I +YQLTQ KL RMA +IQ SRQF+Y V ++M KGEG MEA+++KAYVCKAAEWVTREA+QIHGG GYAEEY VSR FVDARVLSIFEGADETLCLKVIAR +V  AKA
Sbjct:   54 FENGRLQTAARAVGVMQAAYEAAVDYSQNRKTFGNDIAEYQLTQVKLGRMAVVIQGSRQFSYAVAKMMGKGEGAMEASMVKAYVCKAAEWVTREAMQIHGGYGYAEEYSVSRLFVDARVLSIFEGADETLCLKVIARRMVETAKA 198          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7W1HII0_9ACTN (Acyl-CoA dehydrogenase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1HII0_9ACTN)

HSP 1 Score: 230 bits (587), Expect = 1.470e-73
Identity = 115/142 (80.99%), Postives = 127/142 (89.44%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVAD 426
            FENGRLQTAARA+GVMQAAYEAALEYA NR VFGSPI++YQLTQ KL RMA +IQA RQF Y V  LMAKG+G MEA+++KA+VCKAAEWVTREA+QIHGGMGYAEE+ VSR +VDARVLSIFEGADETLCLKVIAR L AD
Sbjct:  152 FENGRLQTAARAIGVMQAAYEAALEYARNRTVFGSPIVEYQLTQTKLGRMAVLIQAGRQFGYHVARLMAKGQGAMEASMVKAFVCKAAEWVTREAMQIHGGMGYAEEFPVSRLYVDARVLSIFEGADETLCLKVIARRLAAD 293          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A539E1D8_9ACTN (Putative acyl-CoA dehydrogenase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539E1D8_9ACTN)

HSP 1 Score: 224 bits (571), Expect = 3.540e-73
Identity = 112/139 (80.58%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSL 417
            FENGRLQTAARAVGVMQAAYEAALEYA NRKVFGS + DY+LTQ KL RMA ++QA RQF+Y V  LMAKGEG  EA+++KAYVCKAAEWV REA+QIHGG GYAEEY VSR +VDARVLSIFEGADETLCLKVIAR L
Sbjct:    4 FENGRLQTAARAVGVMQAAYEAALEYAHNRKVFGSSVFDYELTQVKLGRMAVLVQAGRQFSYSVARLMAKGEGATEASMVKAYVCKAAEWVAREAMQIHGGYGYAEEYPVSRLYVDARVLSIFEGADETLCLKVIARRL 142          
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Match: A0A7X9KN57_9ACTN (Acyl-CoA/acyl-ACP dehydrogenase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KN57_9ACTN)

HSP 1 Score: 234 bits (598), Expect = 2.670e-72
Identity = 120/145 (82.76%), Postives = 128/145 (88.28%), Query Frame = 1
Query:    1 FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRMAAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHGGMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADAKA 435
            FENGRLQTAARAVGVMQAAYEAAL+YA+NR VFGS I+DYQLTQ KL RMA +IQA RQFAY V  +MAKGEG MEA ++KAYVCKAAEWVTREALQIHGGMGYAEEY VSR FVDARVLSIFEGADETLCLKVIAR LV  + A
Sbjct:  397 FENGRLQTAARAVGVMQAAYEAALDYAQNRNVFGSSIVDYQLTQVKLGRMAMLIQAGRQFAYSVARMMAKGEGTMEAAMVKAYVCKAAEWVTREALQIHGGMGYAEEYTVSRLFVDARVLSIFEGADETLCLKVIARRLVDQSNA 541          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99555.22893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6NYR2_9ACTN2.480e-7685.52Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Actinomyce... [more]
UPI001C62DF664.350e-7686.71acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Iamia sp. ... [more]
A0A7W0KTS7_9ACTN4.810e-7686.71Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Acidimicro... [more]
A0A7W0LR00_9ACTN8.300e-7681.82Acyl-CoA dehydrogenase n=1 Tax=Acidimicrobiia bact... [more]
A0A7Y2GSG9_9ACTN9.730e-7686.11Acyl-CoA/acyl-ACP dehydrogenase n=1 Tax=Acidimicro... [more]
A0A7V9NUN9_9ACTN9.310e-7584.62Acyl-CoA dehydrogenase family protein n=1 Tax=Acti... [more]
A0A7K0UR66_9ACTN8.440e-7477.93Acyl-CoA dehydrogenase n=2 Tax=root TaxID=1 RepID=... [more]
A0A7W1HII0_9ACTN1.470e-7380.99Acyl-CoA dehydrogenase n=1 Tax=Acidimicrobiia bact... [more]
A0A539E1D8_9ACTN3.540e-7380.58Putative acyl-CoA dehydrogenase n=1 Tax=Acidimicro... [more]
A0A7X9KN57_9ACTN2.670e-7282.76Acyl-CoA/acyl-ACP dehydrogenase n=2 Tax=Actinobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99555contigM-pyrifera_M_contig99555:3..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score230.7
Seed ortholog evalue4.3e-58
Seed eggNOG ortholog1313172.YM304_14140
Preferred namemcd
KEGG rclassRC02483
KEGG koko:K14448
KEGG ReactionR09293
KEGG Pathwayko00630,ko01120,ko01200,map00630,map01120,map01200
KEGG ModuleM00373
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acyl-CoA dehydrogenase, C-terminal domain
EggNOG OGs2GIX8@201174,4CMR3@84992,COG1960@1,COG1960@2
EC1.3.8.12
COG Functional cat.C
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.778592-CDS-M-pyrifera_M_contig99555:2..4401622816912.778592-CDS-M-pyrifera_M_contig99555:2..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99555 3..440 +
1692278251.710203-CDS-M-pyrifera_M_contig99555:2..4401692278251.710203-CDS-M-pyrifera_M_contig99555:2..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99555 3..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99555.22893.1prot_M-pyrifera_M_contig99555.22893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99555 3..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99555.22893.1

>prot_M-pyrifera_M_contig99555.22893.1 ID=prot_M-pyrifera_M_contig99555.22893.1|Name=mRNA_M-pyrifera_M_contig99555.22893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
FENGRLQTAARAVGVMQAAYEAALEYAENRKVFGSPILDYQLTQAKLTRM
AAIIQASRQFAYGVGELMAKGEGKMEATLIKAYVCKAAEWVTREALQIHG
GMGYAEEYDVSRYFVDARVLSIFEGADETLCLKVIARSLVADAKA*
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mRNA from alignment at M-pyrifera_M_contig99555:3..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99555.22893.1 ID=mRNA_M-pyrifera_M_contig99555.22893.1|Name=mRNA_M-pyrifera_M_contig99555.22893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig99555:3..440+ (Macrocystis pyrifera P11B4 male)
TTCGAGAACGGGCGACTCCAGACCGCCGCTCGGGCCGTCGGCGTCATGCA GGCCGCCTACGAGGCCGCACTCGAGTACGCCGAGAACCGCAAGGTCTTCG GCAGCCCGATCCTCGACTATCAGCTCACCCAGGCCAAGCTCACCCGCATG GCCGCCATCATCCAGGCCTCACGCCAGTTCGCCTACGGCGTCGGCGAACT CATGGCCAAGGGCGAAGGCAAGATGGAAGCCACGCTGATCAAGGCCTACG TCTGCAAGGCCGCCGAGTGGGTCACGCGCGAAGCGCTCCAGATCCACGGC GGCATGGGCTACGCCGAGGAATACGACGTCAGCCGCTACTTCGTCGACGC TCGGGTGCTCTCGATCTTCGAAGGTGCCGACGAGACCCTCTGCCTGAAGG TCATCGCCCGCAGCCTCGTCGCGGACGCGAAGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99555:3..440+

>mRNA_M-pyrifera_M_contig99555.22893.1 ID=mRNA_M-pyrifera_M_contig99555.22893.1|Name=mRNA_M-pyrifera_M_contig99555.22893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig99555:3..440+ (Macrocystis pyrifera P11B4 male)
TTCGAGAACGGGCGACTCCAGACCGCCGCTCGGGCCGTCGGCGTCATGCA
GGCCGCCTACGAGGCCGCACTCGAGTACGCCGAGAACCGCAAGGTCTTCG
GCAGCCCGATCCTCGACTATCAGCTCACCCAGGCCAAGCTCACCCGCATG
GCCGCCATCATCCAGGCCTCACGCCAGTTCGCCTACGGCGTCGGCGAACT
CATGGCCAAGGGCGAAGGCAAGATGGAAGCCACGCTGATCAAGGCCTACG
TCTGCAAGGCCGCCGAGTGGGTCACGCGCGAAGCGCTCCAGATCCACGGC
GGCATGGGCTACGCCGAGGAATACGACGTCAGCCGCTACTTCGTCGACGC
TCGGGTGCTCTCGATCTTCGAAGGTGCCGACGAGACCCTCTGCCTGAAGG
TCATCGCCCGCAGCCTCGTCGCGGACGCGAAGGCCTGATTCGAGAACGGG
CGACTCCAGACCGCCGCTCGGGCCGTCGGCGTCATGCAGGCCGCCTACGA
GGCCGCACTCGAGTACGCCGAGAACCGCAAGGTCTTCGGCAGCCCGATCC
TCGACTATCAGCTCACCCAGGCCAAGCTCACCCGCATGGCCGCCATCATC
CAGGCCTCACGCCAGTTCGCCTACGGCGTCGGCGAACTCATGGCCAAGGG
CGAAGGCAAGATGGAAGCCACGCTGATCAAGGCCTACGTCTGCAAGGCCG
CCGAGTGGGTCACGCGCGAAGCGCTCCAGATCCACGGCGGCATGGGCTAC
GCCGAGGAATACGACGTCAGCCGCTACTTCGTCGACGCTCGGGTGCTCTC
GATCTTCGAAGGTGCCGACGAGACCCTCTGCCTGAAGGTCATCGCCCGCA
GCCTCGTCGCGGACGCGAAGGCCTGA
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