mRNA_M-pyrifera_M_contig99507.22891.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99507.22891.1
Unique NamemRNA_M-pyrifera_M_contig99507.22891.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A517PT59_9PLAN (Magnesium transport protein CorA n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A517PT59_9PLAN)

HSP 1 Score: 183 bits (465), Expect = 1.170e-55
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFDKS 279
            GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFDKS
Sbjct:  231 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFDKS 323
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A518FTB7_9PLAN (Magnesium transport protein CorA n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FTB7_9PLAN)

HSP 1 Score: 170 bits (430), Expect = 2.070e-50
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQIIAGTADRV+SLQRDYDA+VQ+RVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATA  TAGYFY+RGWFD
Sbjct:  231 GQIIAGTADRVSSLQRDYDAVVQNRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAVFTAGYFYIRGWFD 321
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A517XCT8_9PLAN (Magnesium transport protein CorA n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XCT8_9PLAN)

HSP 1 Score: 166 bits (421), Expect = 4.660e-49
Identity = 82/91 (90.11%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQII GTADRVNSLQRDYDA+VQS VESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMG+KSGYLIVIGIML TA +TAGYFY+RGWF+
Sbjct:  231 GQIITGTADRVNSLQRDYDAVVQSNVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGVKSGYLIVIGIMLTTAALTAGYFYIRGWFE 321
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: F0SGV5_RUBBR (Mg2 transporter protein CorA family protein n=2 Tax=Rubinisphaera TaxID=1649490 RepID=F0SGV5_RUBBR)

HSP 1 Score: 166 bits (421), Expect = 4.660e-49
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQIIAGTADRV SLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIG MLATA  TA YFYLRGWF+
Sbjct:  231 GQIIAGTADRVASLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGFMLATAVFTASYFYLRGWFE 321
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A5C5XCS1_9PLAN (Magnesium transport protein CorA n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A5C5XCS1_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 5.210e-42
Identity = 72/91 (79.12%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQIIAG A RV+SLQRDY+++VQ+RV+SRLQFLTI+SAVFLPLTLISG+YGMNF+DLPGMG+KSGYLIVI IMLATA  TA +FY+RGWF+
Sbjct:  231 GQIIAGAAARVDSLQRDYESVVQNRVDSRLQFLTIISAVFLPLTLISGIYGMNFDDLPGMGVKSGYLIVIAIMLATALFTAIFFYIRGWFE 321
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A517ZGJ8_9PLAN (Magnesium transport protein CorA n=2 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZGJ8_9PLAN)

HSP 1 Score: 122 bits (306), Expect = 7.000e-32
Identity = 62/91 (68.13%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQ+IAG   RV  LQ  YDA VQ +VE+RL+ LT+LSA+FLPLTLISG+YGMNF DLPGMGI +GYLIVIGIMLAT F    Y    GWFD
Sbjct:  231 GQMIAGAQSRVADLQGTYDATVQQKVENRLRMLTLLSAIFLPLTLISGIYGMNFTDLPGMGIPTGYLIVIGIMLATVFGMGLYLKRNGWFD 321
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A5C6BLQ8_9PLAN (Magnesium transport protein CorA n=1 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6BLQ8_9PLAN)

HSP 1 Score: 120 bits (300), Expect = 1.070e-31
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQ+IAG   RV  LQ  YDA VQ +VE+RL+ LT+L A+FLPLTLISG+YGMNF DLPGMGI +GYLIVIGIMLAT F    Y    GWFD
Sbjct:  156 GQMIAGAQSRVADLQGTYDATVQQKVENRLRMLTLLPAIFLPLTLISGIYGMNFTDLPGMGIPTGYLIVIGIMLATLFGMGLYLKRNGWFD 246
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BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A517QI11_9PLAN (Magnesium transport protein CorA n=1 Tax=Thalassoglobus polymorphus TaxID=2527994 RepID=A0A517QI11_9PLAN)

HSP 1 Score: 119 bits (298), Expect = 1.070e-30
Identity = 57/91 (62.64%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            GQII G   RV SL RDY+ ++Q RV++RL+FLTILSAV +PL+LISG+YGMNFND+P MG   GYL+VIG ML TA +T GY + +GWF+
Sbjct:  231 GQIIDGAESRVVSLARDYELVLQRRVDNRLRFLTILSAVLMPLSLISGIYGMNFNDMPAMGKPLGYLVVIGAMLGTAALTGGYLWRKGWFE 321
[Close]
BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: A0A1I3F4Y3_9PLAN (Magnesium transporter n=2 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3F4Y3_9PLAN)

HSP 1 Score: 112 bits (280), Expect = 1.160e-27
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            G +I G   +V ++Q++Y+  VQ R+E+RL+FLTI+SAVFLPLTLIS +YGMNFNDLP M  + GYL+VIG+ML TA +T  + Y RGWF+
Sbjct:  286 GSLIEGAEAKVAAVQQEYELAVQHRLENRLRFLTIISAVFLPLTLISAVYGMNFNDLPAMHWEYGYLVVIGMMLTTAGVTGAFLYWRGWFE 376
[Close]
BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Match: Q1MS72_LAWIP (CorA, CorA-like Mg2+ transporter protein n=1 Tax=Lawsonia intracellularis (strain PHE/MN1-00) TaxID=363253 RepID=Q1MS72_LAWIP)

HSP 1 Score: 82.8 bits (203), Expect = 6.890e-17
Identity = 35/82 (42.68%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:   28 RVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLYGMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFD 273
            R+  +Q+ Y  L++ + E RL+ LT+LS V++PLTLI+ +YGMNF ++PG+G + GY +++G+M+  + I   +FY +GWF 
Sbjct:  230 RLRDIQQFYQYLMERKTEQRLRQLTVLSTVYMPLTLITSIYGMNFENMPGIGWEYGYFVLLGLMVLISGILIYFFYRKGWFQ 311
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99507.22891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PT59_9PLAN1.170e-55100.00Magnesium transport protein CorA n=6 Tax=Planctomy... [more]
A0A518FTB7_9PLAN2.070e-5093.41Magnesium transport protein CorA n=2 Tax=Gimesia p... [more]
A0A517XCT8_9PLAN4.660e-4990.11Magnesium transport protein CorA n=1 Tax=Gimesia m... [more]
F0SGV5_RUBBR4.660e-4993.41Mg2 transporter protein CorA family protein n=2 Ta... [more]
A0A5C5XCS1_9PLAN5.210e-4279.12Magnesium transport protein CorA n=2 Tax=Planctomy... [more]
A0A517ZGJ8_9PLAN7.000e-3268.13Magnesium transport protein CorA n=2 Tax=Symmachie... [more]
A0A5C6BLQ8_9PLAN1.070e-3167.03Magnesium transport protein CorA n=1 Tax=Symmachie... [more]
A0A517QI11_9PLAN1.070e-3062.64Magnesium transport protein CorA n=1 Tax=Thalassog... [more]
A0A1I3F4Y3_9PLAN1.160e-2758.24Magnesium transporter n=2 Tax=Planctomicrobium pir... [more]
Q1MS72_LAWIP6.890e-1742.68CorA, CorA-like Mg2+ transporter protein n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99507contigM-pyrifera_M_contig99507:407..688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score166.8
Seed ortholog evalue4.9e-39
Seed eggNOG ortholog756272.Plabr_0766
Preferred namezntB
KEGG koko:K03284,ko:K16074
KEGG TC1.A.35.1,1.A.35.3,1.A.35.4
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0015075,GO:0015318,GO:0015562,GO:0016020,GO:0016021,GO:0022857,GO:0022883,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0046583,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071577,GO:0071944,GO:0072509,GO:0072511,GO:0098655,GO:0098660,GO:0098662
EggNOG free text desc.Magnesium transport protein CorA
EggNOG OGsCOG0598@1,COG0598@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.7029903-CDS-M-pyrifera_M_contig99507:406..6881622816912.7029903-CDS-M-pyrifera_M_contig99507:406..688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99507 407..688 -
1692278251.6746047-CDS-M-pyrifera_M_contig99507:406..6881692278251.6746047-CDS-M-pyrifera_M_contig99507:406..688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99507 407..688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99507.22891.1prot_M-pyrifera_M_contig99507.22891.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99507 407..688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99507.22891.1

>prot_M-pyrifera_M_contig99507.22891.1 ID=prot_M-pyrifera_M_contig99507.22891.1|Name=mRNA_M-pyrifera_M_contig99507.22891.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=94bp
GQIIAGTADRVNSLQRDYDALVQSRVESRLQFLTILSAVFLPLTLISGLY
GMNFNDLPGMGIKSGYLIVIGIMLATAFITAGYFYLRGWFDKS*
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mRNA from alignment at M-pyrifera_M_contig99507:407..688-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99507.22891.1 ID=mRNA_M-pyrifera_M_contig99507.22891.1|Name=mRNA_M-pyrifera_M_contig99507.22891.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig99507:407..688- (Macrocystis pyrifera P11B4 male)
GGACAGATCATCGCCGGCACTGCCGACCGGGTGAACAGCCTGCAGCGGGA
TTATGATGCCCTCGTGCAGAGTCGCGTCGAAAGCCGTCTGCAGTTTCTGA
CGATCCTTTCTGCAGTTTTTCTCCCCCTGACATTAATCTCCGGACTCTAC
GGCATGAATTTCAACGATCTGCCCGGGATGGGAATCAAATCCGGATACCT
GATCGTCATCGGAATCATGCTGGCAACGGCTTTCATCACAGCCGGTTACT
TCTATCTCCGTGGCTGGTTTGACAAAAGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99507:407..688-

>mRNA_M-pyrifera_M_contig99507.22891.1 ID=mRNA_M-pyrifera_M_contig99507.22891.1|Name=mRNA_M-pyrifera_M_contig99507.22891.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig99507:407..688- (Macrocystis pyrifera P11B4 male)
GGACAGATCATCGCCGGCACTGCCGACCGGGTGAACAGCCTGCAGCGGGA
TTATGATGCCCTCGTGCAGAGTCGCGTCGAAAGCCGTCTGCAGTTTCTGA
CGATCCTTTCTGCAGTTTTTCTCCCCCTGACATTAATCTCCGGACTCTAC
GGCATGAATTTCAACGATCTGCCCGGGATGGGAATCAAATCCGGATACCT
GATCGTCATCGGAATCATGCTGGCAACGGCTTTCATCACAGCCGGTTACT
TCTATCTCCGTGGCTGGTTTGACAAAAGCTGAGGACAGATCATCGCCGGC
ACTGCCGACCGGGTGAACAGCCTGCAGCGGGATTATGATGCCCTCGTGCA
GAGTCGCGTCGAAAGCCGTCTGCAGTTTCTGACGATCCTTTCTGCAGTTT
TTCTCCCCCTGACATTAATCTCCGGACTCTACGGCATGAATTTCAACGAT
CTGCCCGGGATGGGAATCAAATCCGGATACCTGATCGTCATCGGAATCAT
GCTGGCAACGGCTTTCATCACAGCCGGTTACTTCTATCTCCGTGGCTGGT
TTGACAAAAGCTGA
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