mRNA_M-pyrifera_M_contig9950.22890.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9950.22890.1
Unique NamemRNA_M-pyrifera_M_contig9950.22890.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: D7G2W6_ECTSI (Putative growth-on protein GRO10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2W6_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.360e-70
Identity = 112/123 (91.06%), Postives = 119/123 (96.75%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVSV 369
            LQ+LFGCCLCATFL+TIRLPSIKVATFLLCLAFLYDIFWVF S  LFGESVMVKVATGGEITQDPTFCEKYPT+ GCQVESLPMLLE+PRL+DYTGGYAMLGLGDIVIPGLLLSFAHR+D+SV
Sbjct:  429 LQNLFGCCLCATFLSTIRLPSIKVATFLLCLAFLYDIFWVFLSPQLFGESVMVKVATGGEITQDPTFCEKYPTSDGCQVESLPMLLELPRLWDYTGGYAMLGLGDIVIPGLLLSFAHRYDLSV 551          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A7S2BZ12_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ12_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.660e-49
Identity = 82/123 (66.67%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVSV 369
            LQDLFG CLC  FL+ IR  ++KVA  LL +AFLYDIF+VF S   F ESVMVKVATG + T DP +CEKYPT S CQ   LPMLL +PR+ DYTGGY MLGLGDIV+PGLL++FA R+DVS+
Sbjct:   34 LQDLFGMCLCVLFLSVIRFSNMKVAALLLSMAFLYDIFFVFISPYFFSESVMVKVATGNQPTADPDYCEKYPTDSDCQSTELPMLLLLPRIDDYTGGYTMLGLGDIVLPGLLVAFAARYDVSI 156          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A7S2H102_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H102_9STRA)

HSP 1 Score: 172 bits (435), Expect = 5.500e-48
Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    4 QDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVS 366
            QD+FG CLC  FL+ IR  +++VAT LLC+AF YDIF+VF S   F ESVMVKVATG + T+DP +CEKYPT S C    LPMLLE+PR+FDYTGGY MLGLGDIV+PGLL+SFA R+DVS
Sbjct:  414 QDIFGMCLCVLFLSVIRFSNVRVATLLLCMAFFYDIFFVFISPIFFTESVMVKVATGSQPTKDPDYCEKYPTDSECISTELPMLLELPRIFDYTGGYTMLGLGDIVLPGLLVSFAIRYDVS 534          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A836CBZ5_9STRA (Putative growth-on protein GRO10 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBZ5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.160e-46
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVS 366
            LQDLFGC LC  FLA++RL +++VA  LL LAF+YDIFWVF S  LF ESVMV VATGG+ T DP  CEKYP   GC V +LPMLL++PR+ DY GG  MLGLGDIV+PGLLLSFA RFD +
Sbjct:  411 LQDLFGCSLCVVFLASLRLTNLRVAAVLLSLAFVYDIFWVFLSPFLFSESVMVAVATGGDSTVDPLTCEKYPDTHGCVVHTLPMLLKLPRIGDYQGGSVMLGLGDIVLPGLLLSFAARFDAA 532          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A7S0C0P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0P9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.090e-40
Identity = 75/122 (61.48%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    4 QDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLF-GESVMVKVAT-GGEITQDPTFCEKYPTASGCQVES-LPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFD 360
            QD+ GCC+C  FL+ I+L SIKV T LL   F+YDIF+VF +  LF GESVM+ VAT GG    DP FCEKYP    C+  + LPMLL +PRLFDY GG ++LGLGDIVIPGLLLSF  R+D
Sbjct:   56 QDVMGCCVCVVFLSIIKLQSIKVGTILLVALFIYDIFFVFITPLLFNGESVMITVATSGGAPAGDPNFCEKYPRDDDCEGGNPLPMLLTVPRLFDYLGGMSLLGLGDIVIPGLLLSFTARYD 177          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A8J2X1D8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1D8_9STRA)

HSP 1 Score: 150 bits (379), Expect = 3.210e-40
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 QDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFD 360
            QDLFG CLC  FL+ I+L S++VA+ LLC+AF YDIF+VF S  LFGESVMV+VATG   T+D  +CEKYP    CQ +SLPMLL +PR FD   GY MLGLGDIV+PGLL++FA R D
Sbjct:  388 QDLFGICLCVLFLSVIKLSSLRVASLLLCMAFCYDIFFVFISPHLFGESVMVRVATGKAPTKDADYCEKYPDDKDCQSQSLPMLLLLPR-FDGLSGYTMLGLGDIVLPGLLVAFAARCD 505          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: F0YJD8_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJD8_AURAN)

HSP 1 Score: 142 bits (357), Expect = 5.190e-40
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVSVS 372
            LQD FG CLC  FL  I+L S++VA  LL +AF YDIF+VF S   F ES+MVKVATG   ++D  +CEKYP    CQ   LPMLL +PR  +  GGY MLGLGDIV+PGLL+SFA R+D + +
Sbjct:   33 LQDTFGMCLCVLFLNVIKLNSLRVAAMLLSMAFCYDIFFVFLSPYFFEESIMVKVATGKGPSKDADYCEKYPADDDCQSTQLPMLLMLPRFGEVGGGYTMLGLGDIVLPGLLVSFAARYDAAAA 156          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A7S2R3L5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R3L5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 4.040e-39
Identity = 75/123 (60.98%), Postives = 89/123 (72.36%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVSV 369
            LQDLFG CLC  FL  IRLP+++VA  LL LAF YDIF+VF S ++F +SVMVKVA+G   T D  FCEKYP+ + CQ   LPMLL  PR+ DY  GY MLGLGDIV+PGLL+ F  RFD  +
Sbjct:  355 LQDLFGVCLCLLFLQIIRLPNLRVAAQLLSLAFAYDIFFVFISPAIFKQSVMVKVASGSGPTADEDFCEKYPSDADCQSWELPMLLLFPRVGDYLEGYTMLGLGDIVLPGLLVCFVARFDALI 477          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: W7TAM5_9STRA (Signal peptide peptidase-aspartyl protease family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAM5_9STRA)

HSP 1 Score: 147 bits (371), Expect = 8.930e-39
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVATGGEITQDPTFCEKYPTASGCQV-ESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFD 360
            LQ++ G  LC  FL+ +R P+IKVAT LL LAFLYDIF+VF S   F ESVM+KVATGG    D TFCEKYP    C+V + LPMLL +PR+ DY GG+ MLGLGDI++PGLL++FA R+D
Sbjct:  451 LQNIMGVSLCILFLSLVRFPNIKVATILLSLAFLYDIFFVFLSPIFFQESVMIKVATGGAPRADETFCEKYPEDEKCRVRDMLPMLLVLPRINDYAGGFTMLGLGDIILPGLLVAFAARYD 571          
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Match: A0A7S3KYI1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KYI1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.780e-38
Identity = 76/125 (60.80%), Postives = 94/125 (75.20%), Query Frame = 1
Query:    4 QDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGESVMVKVAT-GGEITQDPTFCEKYPTASGCQV-ESLPMLLEIPRLFDYTGGYAMLGLGDIVIPGLLLSFAHRFDVSVS 372
            QD+FG C+C  FL  I+L S+KVA+ LL +AF YDIF+VF S  +F +SVM+ VAT GG  T DP +CEKYP  SGCQ  + LPMLL +PRLFDY GG  +LGLGDIV+PGLL+S+A RFD + S
Sbjct:  467 QDVFGICMCVLFLQVIKLNSLKVASALLIVAFFYDIFFVFLSPLIFSKSVMIDVATSGGPPTADPLWCEKYPNDSGCQGGDPLPMLLTMPRLFDYEGGSNLLGLGDIVLPGLLVSYAARFDAAKS 591          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9950.22890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2W6_ECTSI1.360e-7091.06Putative growth-on protein GRO10 n=2 Tax=Ectocarpu... [more]
A0A7S2BZ12_9STRA2.660e-4966.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2H102_9STRA5.500e-4867.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A836CBZ5_9STRA3.160e-4667.21Putative growth-on protein GRO10 n=1 Tax=Tribonema... [more]
A0A7S0C0P9_9STRA2.090e-4061.48Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A8J2X1D8_9STRA3.210e-4063.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YJD8_AURAN5.190e-4057.26Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2R3L5_9STRA4.040e-3960.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TAM5_9STRA8.930e-3961.16Signal peptide peptidase-aspartyl protease family ... [more]
A0A7S3KYI1_9STRA1.780e-3860.80Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9950contigM-pyrifera_M_contig9950:3419..4636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.6
Seed ortholog evalue9.7e-59
Seed eggNOG ortholog2880.D7G2W6
KEGG koko:K09596,ko:K09597,ko:K09598
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG2442@2759,KOG2443@1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons3
Model size372
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9950.22890.1prot_M-pyrifera_M_contig9950.22890.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9950 3419..4636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.639136-CDS-M-pyrifera_M_contig9950:3418..34871622816912.639136-CDS-M-pyrifera_M_contig9950:3418..3487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 3419..3487 +
1692278251.6353047-CDS-M-pyrifera_M_contig9950:3418..34871692278251.6353047-CDS-M-pyrifera_M_contig9950:3418..3487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 3419..3487 +
1622816912.6539721-CDS-M-pyrifera_M_contig9950:3925..40901622816912.6539721-CDS-M-pyrifera_M_contig9950:3925..4090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 3926..4090 +
1692278251.6490226-CDS-M-pyrifera_M_contig9950:3925..40901692278251.6490226-CDS-M-pyrifera_M_contig9950:3925..4090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 3926..4090 +
1622816912.668926-CDS-M-pyrifera_M_contig9950:4498..46361622816912.668926-CDS-M-pyrifera_M_contig9950:4498..4636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 4499..4636 +
1692278251.6579883-CDS-M-pyrifera_M_contig9950:4498..46361692278251.6579883-CDS-M-pyrifera_M_contig9950:4498..4636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9950 4499..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9950.22890.1

>prot_M-pyrifera_M_contig9950.22890.1 ID=prot_M-pyrifera_M_contig9950.22890.1|Name=mRNA_M-pyrifera_M_contig9950.22890.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
LQDLFGCCLCATFLATIRLPSIKVATFLLCLAFLYDIFWVFCSSSLFGES
VMVKVATGGEITQDPTFCEKYPTASGCQVESLPMLLEIPRLFDYTGGYAM
LGLGDIVIPGLLLSFAHRFDVSVS
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mRNA from alignment at M-pyrifera_M_contig9950:3419..4636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9950.22890.1 ID=mRNA_M-pyrifera_M_contig9950.22890.1|Name=mRNA_M-pyrifera_M_contig9950.22890.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig9950:3419..4636+ (Macrocystis pyrifera P11B4 male)
TTGCAGGACCTGTTTGGGTGCTGCCTTTGCGCTACGTTCCTGGCCACCAT ACGCCTCCCCAGCATTAAGGTACGCACCACACGATGTCGTATCCACGTAT CGAACAGATCAGATACCAGGTATATCATATTCCGGCGTCATTGAGCTAGA TCTTTGAGGGCGGATGTATCCCTGATCTGTATGATCTAGTTCATGGTACC GCCTGGGGCCGTAAAATCTGCACGATTTACGACAGGGTTCCTGGGTTCGA CCCGTACTAGGTGTACATATCCTGCACAGCATTTCATGACGGCATGCCAA GGTCTAGATGAAGCGCAGTAGATAGATGACTCGTCCTCTGCGGGTAAAAG TTGTCATGTGTTGAGTGTCGAACTTCCGGTACATCCTCCCTCCATAGTGA TATCGATACCATCAATAATGTAATGATGGTAGGATGGTACTCAGATACTC GTAGTATTGAAATGTCCCTAATTGGCCGATGCCGTTTTGAAACCGGCCGC ACCTCAGGTGGCAACGTTCTTGTTGTGCCTGGCCTTCTTGTACGACATTT TTTGGGTGTTTTGTTCATCTTCTCTTTTCGGCGAAAGCGTTATGGTTAAG GTCGCCACCGGTGGCGAGATCACCCAGGACCCGACCTTCTGCGAGAAATA CCCGACCGCGTCTGGGTGTCAGGTGCGCGGTCATCACTGATTGATGATTC TACTAGTGTTTTTGTTTTTTGCTGCGGCGATTGATTCGGTGGTGTTGTCT GCGCAGGAAAGCGATAGCGGGGGGGGCGATGTACTCATGTGCTGCTTGCC TTAGTTGTTTGACCATTGACCACGCATCCCTTTCGAGACGGGGCACCGTT CCTATCTCTGGCAGAGACACCTCCAACAATTGGGAGCTCATCACGTTGTT TCCATACGAAGTATATTGCGTAATATGTAATAGGCAAATGCTGTTCAAGG AAGCCGTCGGAGTTCCGCCGCACCCTGGGAGGATAGGGTCCCATTCCCGG GTCAGAAAGCCTCTCGTACGTCTACAACTCGGACAATAATTTATAGCGAT TGTCCTGGGTCTGCCCGTCTCCCGTTTCAGGTGGAAAGCCTCCCGATGCT GCTGGAAATCCCTCGATTGTTTGACTACACGGGGGGATACGCCATGCTCG GACTGGGCGACATCGTCATCCCCGGCCTGCTGCTGTCTTTTGCGCACCGC TTCGATGTGTCGGTGAGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9950:3419..4636+

>mRNA_M-pyrifera_M_contig9950.22890.1 ID=mRNA_M-pyrifera_M_contig9950.22890.1|Name=mRNA_M-pyrifera_M_contig9950.22890.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig9950:3419..4636+ (Macrocystis pyrifera P11B4 male)
TTGCAGGACCTGTTTGGGTGCTGCCTTTGCGCTACGTTCCTGGCCACCAT
ACGCCTCCCCAGCATTAAGTTGCAGGACCTGTTTGGGTGCTGCCTTTGCG
CTACGTTCCTGGCCACCATACGCCTCCCCAGCATTAAGGTGGCAACGTTC
TTGTTGTGCCTGGCCTTCTTGTACGACATTTTTTGGGTGTTTTGTTCATC
TTCTCTTTTCGGCGAAAGCGTTATGGTTAAGGTCGCCACCGGTGGCGAGA
TCACCCAGGACCCGACCTTCTGCGAGAAATACCCGACCGCGTCTGGGTGT
CAGGTGGCAACGTTCTTGTTGTGCCTGGCCTTCTTGTACGACATTTTTTG
GGTGTTTTGTTCATCTTCTCTTTTCGGCGAAAGCGTTATGGTTAAGGTCG
CCACCGGTGGCGAGATCACCCAGGACCCGACCTTCTGCGAGAAATACCCG
ACCGCGTCTGGGTGTCAGGTGGAAAGCCTCCCGATGCTGCTGGAAATCCC
TCGATTGTTTGACTACACGGGGGGATACGCCATGCTCGGACTGGGCGACA
TCGTCATCCCCGGCCTGCTGCTGTCTTTTGCGCACCGCTTCGATGTGTCG
GTGAGTGTGGAAAGCCTCCCGATGCTGCTGGAAATCCCTCGATTGTTTGA
CTACACGGGGGGATACGCCATGCTCGGACTGGGCGACATCGTCATCCCCG
GCCTGCTGCTGTCTTTTGCGCACCGCTTCGATGTGTCGGTGAGT
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