mRNA_M-pyrifera_M_contig99476.22887.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99476.22887.1
Unique NamemRNA_M-pyrifera_M_contig99476.22887.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A2P6NKP4_9EUKA (Nucleolar GTP-binding protein 2 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NKP4_9EUKA)

HSP 1 Score: 215 bits (547), Expect = 1.500e-63
Identity = 94/142 (66.20%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    7 RARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            RA VF+KGTS+R+WGELYKV+D SD++++VLDARDP GTRCR +E+ L  EK+H H++ VLNK DLVPTW   RW++ LS E+PTLAFHAS+  PFG+GS++ LLRQ + LH+DK+QISVG IGYPNVGKSSVIN ++ KRV
Sbjct:  181 RADVFEKGTSKRIWGELYKVVDSSDVIIQVLDARDPMGTRCRHIEKLLTTEKKHKHLIFVLNKCDLVPTWATARWVRVLSEEFPTLAFHASITNPFGKGSLIQLLRQMASLHKDKKQISVGFIGYPNVGKSSVINTLKNKRV 322          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: C1E3W8_MICCC (Nuclear/nucleolar GTPase 2 (Fragment) n=2 Tax=Micromonas TaxID=38832 RepID=C1E3W8_MICCC)

HSP 1 Score: 209 bits (531), Expect = 2.820e-63
Identity = 96/146 (65.75%), Postives = 120/146 (82.19%), Query Frame = 1
Query:    1 AARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLARE--KRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            AA+  +F+KG S+R+WGELYKV+D SD++++VLDARDP GTRC  +E  L ++  KRH HV+L+LNK DLVP WV +RW+  LS EYPTLAFHASV  PFG+G+++SLLRQFSRL  DKQ ISVG +GYPNVGKSSVINA+R K+V
Sbjct:  176 AAKGSLFEKGQSKRIWGELYKVVDSSDVIIQVLDARDPMGTRCHHLEYHLKKDAMKRHKHVILLLNKVDLVPAWVTKRWLHVLSREYPTLAFHASVTNPFGKGAVLSLLRQFSRLRMDKQNISVGFVGYPNVGKSSVINALRTKKV 321          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A7R9TDS9_9VIRI (Nuclear/nucleolar GTPase 2 n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TDS9_9VIRI)

HSP 1 Score: 213 bits (543), Expect = 3.570e-63
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = 1
Query:    7 RARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            RA++FDKG S R+WGELYKV+D SD+V++V+DARDPEGTRCR +E  L +E +H H++L+LNK DLVP WVARRW+ ALS EYPTLAFHAS  RPFG+G+++ LLRQ +RL  DKQ ISVG++GYPNVGKSSVIN +R K+V
Sbjct:  206 RAKMFDKGQSGRIWGELYKVIDSSDVVIQVIDARDPEGTRCRHLEAHLQKEHKHKHLILLLNKCDLVPAWVARRWLAALSKEYPTLAFHASSGRPFGKGALLGLLRQLARLKSDKQSISVGMVGYPNVGKSSVINTLRDKKV 347          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: UPI001F041473 (nucleolar GTP-binding protein 2-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F041473)

HSP 1 Score: 210 bits (534), Expect = 9.230e-63
Identity = 92/139 (66.19%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   16 VFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            VF KG S+R+W ELYKV+D SD++L+VLDARDPEGTRCR+VE++L++EK+H H++ VLNK DLVPTWV ++W+  LS EYPTLAF AS+  PFG+G++++ LRQFS+LH DK+ ISVG IGYPNVGKSS+INA+R K+V
Sbjct:  203 VFSKGQSKRIWNELYKVIDSSDVLLQVLDARDPEGTRCRQVEKYLSKEKQHKHLIFVLNKCDLVPTWVTQQWVTILSSEYPTLAFRASLTNPFGKGALINTLRQFSKLHSDKKNISVGCIGYPNVGKSSIINALRSKKV 341          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A1X6PJQ8_PORUM (Nucleolar GTP-binding protein 2 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJQ8_PORUM)

HSP 1 Score: 210 bits (534), Expect = 1.860e-62
Identity = 95/144 (65.97%), Postives = 121/144 (84.03%), Query Frame = 1
Query:    1 AARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            A R RVFDKG SRR+WGEL+KV+D SD+V++VLDARDP GTRCR VER LA++  H  +VL+LNK DLVPTWV  RW++ LS E+PTLAFHASV+  FG+G+++++LRQ  +LH DK+ ISVG++GYPNVGKSSVIN +RGK+V
Sbjct:  291 ANRGRVFDKGQSRRIWGELHKVVDSSDVVIQVLDARDPAGTRCRYVERLLAKQGAHKQLVLLLNKCDLVPTWVTSRWLRILSREHPTLAFHASVNHSFGKGALINVLRQLKKLHADKKSISVGIVGYPNVGKSSVINTLRGKKV 434          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: UPI0003F084D4 (nucleolar GTP-binding protein 2 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F084D4)

HSP 1 Score: 213 bits (543), Expect = 1.900e-62
Identity = 93/143 (65.03%), Postives = 122/143 (85.31%), Query Frame = 1
Query:    4 ARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            AR  +F KGTS R+WGELYKV+D SD+V++VLDARDP+GTR + +E +L REK++ H++ +LNK DLVPTWV ++W+  LSH+YPTLAFHASV+ PFG+G+++ LLRQF++LH DK+QISVG IGYPNVGKSSVIN +R K+V
Sbjct:  195 AREPIFSKGTSTRIWGELYKVIDSSDVVVQVLDARDPQGTRSKHIENYLKREKQYKHLIFILNKVDLVPTWVTQKWVAILSHDYPTLAFHASVNNPFGKGALIQLLRQFAKLHLDKKQISVGFIGYPNVGKSSVINTLRAKKV 337          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A6T6BP81_9RHOD (Nucleolar GTP-binding protein 2 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6BP81_9RHOD)

HSP 1 Score: 208 bits (530), Expect = 2.490e-62
Identity = 91/140 (65.00%), Postives = 120/140 (85.71%), Query Frame = 1
Query:   13 RVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            +VFDKG SRR+WGEL+KV+D SD++L+V+DARDP GTRC  +ERF+AR+  H H+VL+LNK DLVPTWV  RW++ LS EYPTLAFH+S++  FG+GS+++LLRQF +LH D++ IS G++GYPNVGKSSVIN +RGK+V
Sbjct:  206 KVFDKGQSRRIWGELHKVVDSSDVILQVIDARDPLGTRCAWLERFVARDCPHKHIVLILNKCDLVPTWVTSRWLRILSREYPTLAFHSSINNSFGKGSLINLLRQFRKLHSDRKSISCGLVGYPNVGKSSVINTLRGKKV 345          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A7J7Q413_9CHLO (Nuclear/nucleolar GTPase 2 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q413_9CHLO)

HSP 1 Score: 211 bits (538), Expect = 3.360e-62
Identity = 96/144 (66.67%), Postives = 120/144 (83.33%), Query Frame = 1
Query:    1 AARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            AA+  +FDKG S+R+WGELYKVLD SD+V++VLDARDPEGTRCR +E+ + +  RH H++L+LNK DLVP WV +RW+  LS EYPTLAFHAS+  PFG+G+++SLLRQ +RL  DKQ ISVG IGYPNVGKSSVINA+R K+V
Sbjct:  190 AAKDAIFDKGQSKRIWGELYKVLDSSDVVIQVLDARDPEGTRCRFLEQHIRKNARHKHLLLLLNKCDLVPAWVTKRWLHTLSREYPTLAFHASITNPFGKGALLSLLRQLARLRSDKQAISVGFIGYPNVGKSSVINALRTKKV 333          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: A0A383VJE8_TETOB (Nuclear/nucleolar GTPase 2 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJE8_TETOB)

HSP 1 Score: 211 bits (538), Expect = 3.610e-62
Identity = 96/144 (66.67%), Postives = 120/144 (83.33%), Query Frame = 1
Query:    1 AARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            AA+  +FDKG S+R+WGELYKVLD SD+V++VLDARDPEGTRC+ +E+ + R  RH H++L+LNK DLVP WV +RW+  LS EYPTLAFHAS+  PFG+G+++SLLRQ +RL  DKQ ISVG IGYPNVGKSSVINA+R K+V
Sbjct:  193 AAKDAIFDKGQSKRIWGELYKVLDSSDVVIQVLDARDPEGTRCKFLEQHIRRNARHKHLLLLLNKCDLVPAWVTKRWLHTLSREYPTLAFHASITNPFGKGALLSLLRQLARLRSDKQAISVGFIGYPNVGKSSVINALRTKKV 336          
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Match: B4DPI9_HUMAN (cDNA FLJ54985, highly similar to Nucleolar GTP-binding protein 2 n=1 Tax=Homo sapiens TaxID=9606 RepID=B4DPI9_HUMAN)

HSP 1 Score: 197 bits (502), Expect = 4.530e-62
Identity = 88/143 (61.54%), Postives = 113/143 (79.02%), Query Frame = 1
Query:    4 ARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFLAREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGRGSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV 432
            A+  ++ KG S+R+WGELYKV+D SD+V++VLDARDP GTR   +E +L +EK   H++ VLNK DLVPTW  +RW+  LS +YPTLAFHAS+  PFG+G+ + LLRQF +LH DK+QISVG IGYPNVGKSSVIN +R K+V
Sbjct:   34 AQEEIYKKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRSPHIETYLKKEKPWKHLIFVLNKCDLVPTWATKRWVAVLSQDYPTLAFHASLTNPFGKGAFIQLLRQFGKLHTDKKQISVGFIGYPNVGKSSVINTLRSKKV 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99476.22887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NKP4_9EUKA1.500e-6366.20Nucleolar GTP-binding protein 2 n=1 Tax=Planoproto... [more]
C1E3W8_MICCC2.820e-6365.75Nuclear/nucleolar GTPase 2 (Fragment) n=2 Tax=Micr... [more]
A0A7R9TDS9_9VIRI3.570e-6367.61Nuclear/nucleolar GTPase 2 n=1 Tax=Prasinoderma co... [more]
UPI001F0414739.230e-6366.19nucleolar GTP-binding protein 2-like n=1 Tax=Xenia... [more]
A0A1X6PJQ8_PORUM1.860e-6265.97Nucleolar GTP-binding protein 2 n=1 Tax=Porphyra u... [more]
UPI0003F084D41.900e-6265.03nucleolar GTP-binding protein 2 n=1 Tax=Saccogloss... [more]
A0A6T6BP81_9RHOD2.490e-6265.00Nucleolar GTP-binding protein 2 n=1 Tax=Compsopogo... [more]
A0A7J7Q413_9CHLO3.360e-6266.67Nuclear/nucleolar GTPase 2 n=1 Tax=Scenedesmus sp.... [more]
A0A383VJE8_TETOB3.610e-6266.67Nuclear/nucleolar GTPase 2 n=1 Tax=Tetradesmus obl... [more]
B4DPI9_HUMAN4.530e-6261.54cDNA FLJ54985, highly similar to Nucleolar GTP-bin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99476contigM-pyrifera_M_contig99476:3..434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score213.8
Seed ortholog evalue5.4e-53
Seed eggNOG ortholog10224.XP_006821231.1
Preferred nameGNL2
KEGG koko:K14537
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001654,GO:0001745,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0007275,GO:0007423,GO:0008150,GO:0009653,GO:0009887,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0042254,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0070013,GO:0071840,GO:0090596,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding
EggNOG OGs38BQU@33154,3B9EG@33208,3CZNX@33213,COG1161@1,KOG2423@2759
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.5016873-CDS-M-pyrifera_M_contig99476:2..4341622816912.5016873-CDS-M-pyrifera_M_contig99476:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99476 3..434 -
1692278251.555669-CDS-M-pyrifera_M_contig99476:2..4341692278251.555669-CDS-M-pyrifera_M_contig99476:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99476 3..434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99476.22887.1prot_M-pyrifera_M_contig99476.22887.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99476 3..434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99476.22887.1

>prot_M-pyrifera_M_contig99476.22887.1 ID=prot_M-pyrifera_M_contig99476.22887.1|Name=mRNA_M-pyrifera_M_contig99476.22887.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
AARARVFDKGTSRRLWGELYKVLDCSDIVLEVLDARDPEGTRCRRVERFL
AREKRHVHVVLVLNKADLVPTWVARRWIKALSHEYPTLAFHASVDRPFGR
GSIMSLLRQFSRLHRDKQQISVGVIGYPNVGKSSVINAIRGKRV
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mRNA from alignment at M-pyrifera_M_contig99476:3..434-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99476.22887.1 ID=mRNA_M-pyrifera_M_contig99476.22887.1|Name=mRNA_M-pyrifera_M_contig99476.22887.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig99476:3..434- (Macrocystis pyrifera P11B4 male)
GCTGCACGTGCACGTGTCTTTGACAAGGGTACATCTCGTCGTCTCTGGGG CGAGTTGTACAAAGTTTTGGACTGTTCTGACATTGTGTTGGAGGTGTTGG ATGCACGTGACCCTGAAGGAACACGTTGTCGTCGTGTAGAACGTTTCTTG GCGCGAGAGAAACGCCATGTGCACGTGGTATTAGTGTTGAACAAAGCAGA CTTAGTTCCAACTTGGGTTGCGCGACGTTGGATCAAGGCTTTGAGTCATG AGTACCCAACTCTTGCGTTCCACGCAAGTGTAGATCGTCCATTTGGTCGA GGCTCCATCATGAGCCTTCTGCGGCAATTTAGCCGTCTCCACCGCGACAA ACAACAAATCTCTGTTGGTGTCATTGGCTACCCCAACGTGGGCAAATCCT CCGTCATCAATGCAATTCGAGGCAAGCGCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99476:3..434-

>mRNA_M-pyrifera_M_contig99476.22887.1 ID=mRNA_M-pyrifera_M_contig99476.22887.1|Name=mRNA_M-pyrifera_M_contig99476.22887.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig99476:3..434- (Macrocystis pyrifera P11B4 male)
GCTGCACGTGCACGTGTCTTTGACAAGGGTACATCTCGTCGTCTCTGGGG
CGAGTTGTACAAAGTTTTGGACTGTTCTGACATTGTGTTGGAGGTGTTGG
ATGCACGTGACCCTGAAGGAACACGTTGTCGTCGTGTAGAACGTTTCTTG
GCGCGAGAGAAACGCCATGTGCACGTGGTATTAGTGTTGAACAAAGCAGA
CTTAGTTCCAACTTGGGTTGCGCGACGTTGGATCAAGGCTTTGAGTCATG
AGTACCCAACTCTTGCGTTCCACGCAAGTGTAGATCGTCCATTTGGTCGA
GGCTCCATCATGAGCCTTCTGCGGCAATTTAGCCGTCTCCACCGCGACAA
ACAACAAATCTCTGTTGGTGTCATTGGCTACCCCAACGTGGGCAAATCCT
CCGTCATCAATGCAATTCGAGGCAAGCGCGTAGCTGCACGTGCACGTGTC
TTTGACAAGGGTACATCTCGTCGTCTCTGGGGCGAGTTGTACAAAGTTTT
GGACTGTTCTGACATTGTGTTGGAGGTGTTGGATGCACGTGACCCTGAAG
GAACACGTTGTCGTCGTGTAGAACGTTTCTTGGCGCGAGAGAAACGCCAT
GTGCACGTGGTATTAGTGTTGAACAAAGCAGACTTAGTTCCAACTTGGGT
TGCGCGACGTTGGATCAAGGCTTTGAGTCATGAGTACCCAACTCTTGCGT
TCCACGCAAGTGTAGATCGTCCATTTGGTCGAGGCTCCATCATGAGCCTT
CTGCGGCAATTTAGCCGTCTCCACCGCGACAAACAACAAATCTCTGTTGG
TGTCATTGGCTACCCCAACGTGGGCAAATCCTCCGTCATCAATGCAATTC
GAGGCAAGCGCGTA
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