mRNA_M-pyrifera_M_contig99475.22886.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99475.22886.1
Unique NamemRNA_M-pyrifera_M_contig99475.22886.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99475.22886.1 vs. uniprot
Match: A0A800MEX1_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MEX1_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 6.600e-14
Identity = 50/132 (37.88%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:    1 IDAAAAEYEAGE-LDVAIDRLVKLQNTPSIEPSLRKRAGQLLNDTCVRLIDELLAAGEPELLERVYALEMPPRLRVEAGIAAARAFLDEGERVQCFKTVRKVEREFPLHHLRLPAGDLLLEAGLSLAADDTT 393
            I+AA  E   G+    A+  L   Q  P +          LL +   + ++EL  +   + LE +  LE+P  L V A +AAARA L+ GERV C K + KV+  +PLH  R  +G LL EAG SLA D  T
Sbjct:   41 IEAARDELLLGDGTSAAVAHLAAAQAAPGLTTEQSATIQVLLVEAVSKRLEELRGSNAADELEALAELELPRDLAVRASLAAARAMLNLGERVDCHKYLVKVDGRYPLHARRAESGRLLFEAGRSLATDQGT 172
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BLAST of mRNA_M-pyrifera_M_contig99475.22886.1 vs. uniprot
Match: A0A2D5B238_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B238_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.110e-13
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:   22 YEAGELDVAIDRLVKLQNTPSIEPSLRKRAGQLLNDTCVRLIDELLAAGEPELLERVYALEMPPRLRVEAGIAAARAFLDEGERVQCFKTVRKVEREFPLHHLRLPAGDLLLEAGLSL 375
            +  G+    +  L+ L+    + P LR+R  + L +T    I++L  +G+   L+R++  + P R+RV AGI AA+A  ++   V  F+ ++KV+R FP H  R  AGD+L + GL L
Sbjct:   14 FALGDAQDGVRHLIALRKRDGLTPDLRERTERQLIETGYAQIEQL--SGDSSGLDRIFRSDYPERVRVRAGILAAKALFEQDHPVSAFEQLKKVDRRFPHHSERAMAGDVLGQVGLHL 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99475.22886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A800MEX1_9BACT6.600e-1437.88Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
A0A2D5B238_9BACT4.110e-1333.90Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99475contigM-pyrifera_M_contig99475:1..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.4600122-CDS-M-pyrifera_M_contig99475:0..3931622816912.4600122-CDS-M-pyrifera_M_contig99475:0..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99475 1..393 -
1692278251.5439215-CDS-M-pyrifera_M_contig99475:0..3931692278251.5439215-CDS-M-pyrifera_M_contig99475:0..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99475 1..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99475.22886.1prot_M-pyrifera_M_contig99475.22886.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99475 1..393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99475.22886.1

>prot_M-pyrifera_M_contig99475.22886.1 ID=prot_M-pyrifera_M_contig99475.22886.1|Name=mRNA_M-pyrifera_M_contig99475.22886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
IDAAAAEYEAGELDVAIDRLVKLQNTPSIEPSLRKRAGQLLNDTCVRLID
ELLAAGEPELLERVYALEMPPRLRVEAGIAAARAFLDEGERVQCFKTVRK
VEREFPLHHLRLPAGDLLLEAGLSLAADDTT
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mRNA from alignment at M-pyrifera_M_contig99475:1..393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99475.22886.1 ID=mRNA_M-pyrifera_M_contig99475.22886.1|Name=mRNA_M-pyrifera_M_contig99475.22886.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig99475:1..393- (Macrocystis pyrifera P11B4 male)
ATCGACGCGGCGGCGGCCGAGTACGAGGCGGGCGAGCTCGACGTCGCGAT
CGACCGGCTCGTCAAGCTGCAGAACACGCCGTCGATCGAGCCGTCGCTGC
GCAAGCGCGCGGGCCAGCTGCTGAACGACACGTGCGTGCGCCTGATCGAC
GAGCTGCTCGCGGCCGGCGAGCCGGAGCTGCTCGAACGCGTCTACGCCCT
CGAGATGCCCCCGCGCTTGCGGGTCGAGGCCGGCATCGCCGCGGCGCGCG
CCTTCCTCGACGAGGGCGAGCGCGTGCAGTGCTTCAAGACCGTGCGCAAG
GTCGAGCGCGAGTTCCCGCTGCACCACCTGCGGCTGCCCGCCGGCGACCT
CCTGCTCGAGGCCGGCCTGTCCCTCGCCGCGGACGACACGACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99475:1..393-

>mRNA_M-pyrifera_M_contig99475.22886.1 ID=mRNA_M-pyrifera_M_contig99475.22886.1|Name=mRNA_M-pyrifera_M_contig99475.22886.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig99475:1..393- (Macrocystis pyrifera P11B4 male)
ATCGACGCGGCGGCGGCCGAGTACGAGGCGGGCGAGCTCGACGTCGCGAT
CGACCGGCTCGTCAAGCTGCAGAACACGCCGTCGATCGAGCCGTCGCTGC
GCAAGCGCGCGGGCCAGCTGCTGAACGACACGTGCGTGCGCCTGATCGAC
GAGCTGCTCGCGGCCGGCGAGCCGGAGCTGCTCGAACGCGTCTACGCCCT
CGAGATGCCCCCGCGCTTGCGGGTCGAGGCCGGCATCGCCGCGGCGCGCG
CCTTCCTCGACGAGGGCGAGCGCGTGCAGTGCTTCAAGACCGTGCGCAAG
GTCGAGCGCGAGTTCCCGCTGCACCACCTGCGGCTGCCCGCCGGCGACCT
CCTGCTCGAGGCCGGCCTGTCCCTCGCCGCGGACGACACGACCATCGACG
CGGCGGCGGCCGAGTACGAGGCGGGCGAGCTCGACGTCGCGATCGACCGG
CTCGTCAAGCTGCAGAACACGCCGTCGATCGAGCCGTCGCTGCGCAAGCG
CGCGGGCCAGCTGCTGAACGACACGTGCGTGCGCCTGATCGACGAGCTGC
TCGCGGCCGGCGAGCCGGAGCTGCTCGAACGCGTCTACGCCCTCGAGATG
CCCCCGCGCTTGCGGGTCGAGGCCGGCATCGCCGCGGCGCGCGCCTTCCT
CGACGAGGGCGAGCGCGTGCAGTGCTTCAAGACCGTGCGCAAGGTCGAGC
GCGAGTTCCCGCTGCACCACCTGCGGCTGCCCGCCGGCGACCTCCTGCTC
GAGGCCGGCCTGTCCCTCGCCGCGGACGACACGACC
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