mRNA_M-pyrifera_M_contig99459.22880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99459.22880.1
Unique NamemRNA_M-pyrifera_M_contig99459.22880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A293MMP6_ORNER (Protein TSSC1 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MMP6_ORNER)

HSP 1 Score: 73.2 bits (178), Expect = 1.820e-15
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   46 DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            D +I TY+EHEDSVY+V WS  +DP++FASLSYDGRLV+ RVP+AE+ RVLL
Sbjct:   35 DGIIATYEEHEDSVYAVQWS-SADPWMFASLSYDGRLVLNRVPRAEKYRVLL 85
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A8C9RCI0_SCLFO (EARP complex and GARP complex interacting protein 1 n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RCI0_SCLFO)

HSP 1 Score: 77.4 bits (189), Expect = 4.400e-15
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 EGECSHARKRAAHGV-DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            +GE +H  +++   + D +I TY+EHEDSVY+V WSC +DP++FASLSYDGRLV+ RVP+A + R+LL
Sbjct:  321 DGEDNHQEEKSKEPLQDSIIATYEEHEDSVYAVEWSC-ADPWLFASLSYDGRLVINRVPRALKYRILL 387
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A8C9RBM1_SCLFO (EARP complex and GARP complex interacting protein 1 n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9RBM1_SCLFO)

HSP 1 Score: 77.4 bits (189), Expect = 5.190e-15
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    1 EGECSHARKRAAHGV-DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            +GE +H  +++   + D +I TY+EHEDSVY+V WSC +DP++FASLSYDGRLV+ RVP+A + R+LL
Sbjct:  389 DGEDNHQEEKSKEPLQDSIIATYEEHEDSVYAVEWSC-ADPWLFASLSYDGRLVINRVPRALKYRILL 455
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A369SNJ2_9METZ (Protein TSSC1 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369SNJ2_9METZ)

HSP 1 Score: 75.5 bits (184), Expect = 2.300e-14
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 EGECSHARKRAAHGVDHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            + E S + K      D +I TY+EHEDSVY+  WSC SDP+VFASLSYDGRLV+ RVP+ E+ ++LL
Sbjct:  342 DDEESTSNKEEEPPKDGIIATYEEHEDSVYASCWSC-SDPWVFASLSYDGRLVINRVPRTEKFKILL 407
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A6I9N199_9TELE (protein TSSC1-like n=7 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6I9N199_9TELE)

HSP 1 Score: 70.5 bits (171), Expect = 5.360e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 EGECSHARKRAAHGV-DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            EGE +H   ++   + D ++ TY+EHEDSVY+  WS  +DP++FASLSYDGRLV+ RVP+A +  +LL
Sbjct:   56 EGEDNHQEDKSKEPLKDSVVSTYEEHEDSVYAAEWS-SADPWLFASLSYDGRLVINRVPRALKYHILL 122
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: UPI0009E394CB (protein TSSC1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E394CB)

HSP 1 Score: 72.8 bits (177), Expect = 9.120e-14
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   46 DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            D +I T+DEHEDSVY+V WS  +DP+VFASLSYDGRLV+ RVP+AE+ ++LL
Sbjct:  216 DGVIATFDEHEDSVYAVEWST-ADPWVFASLSYDGRLVINRVPRAEKYKILL 266
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A8B6FI69_MYTGA (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6FI69_MYTGA)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   46 DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            D +I TY+EHEDSVY+V WS  +DP+VFASLSYDGRLV+ RVP+AE+ ++LL
Sbjct:  333 DGIISTYEEHEDSVYAVDWSA-ADPWVFASLSYDGRLVINRVPRAEKYKILL 383
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A8J1XZL4_OWEFU (Ofus.G112174 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XZL4_OWEFU)

HSP 1 Score: 73.6 bits (179), Expect = 1.070e-13
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   43 VDHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            VD +I TY+EHEDSVY+V WS  +DP++FASLSYDGRLV+ RVP+AE+ ++LL
Sbjct:  336 VDGIIVTYEEHEDSVYAVEWST-ADPWLFASLSYDGRLVINRVPRAEKYKILL 387
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BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: A0A7R9JJN6_TIMCA ((California timema) hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R9JJN6_TIMCA)

HSP 1 Score: 69.3 bits (168), Expect = 1.140e-13
Identity = 33/52 (63.46%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   46 DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            D ++ TYDEHEDSVYSV WS  +DP+ FASLSYDGRLV+ +V +A++ R+LL
Sbjct:   60 DGVLATYDEHEDSVYSVEWS-SADPWTFASLSYDGRLVINKVSRADKYRILL 110
[Close]
BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Match: UPI00077AA6C2 (protein TSSC1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AA6C2)

HSP 1 Score: 72.8 bits (177), Expect = 1.330e-13
Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:   46 DHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDGRLVVCRVPQAEQDRVLL 201
            D +I T+DEHEDSVY+V WS  +DP+VFASLSYDGRLV+ RVP+AE+ ++LL
Sbjct:  255 DGVIATFDEHEDSVYAVEWST-ADPWVFASLSYDGRLVINRVPRAEKYKILL 305
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99459.22880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A293MMP6_ORNER1.820e-1569.23Protein TSSC1 (Fragment) n=1 Tax=Ornithodoros erra... [more]
A0A8C9RCI0_SCLFO4.400e-1555.88EARP complex and GARP complex interacting protein ... [more]
A0A8C9RBM1_SCLFO5.190e-1555.88EARP complex and GARP complex interacting protein ... [more]
A0A369SNJ2_9METZ2.300e-1456.72Protein TSSC1 n=2 Tax=Trichoplax TaxID=10227 RepID... [more]
A0A6I9N199_9TELE5.360e-1451.47protein TSSC1-like n=7 Tax=Percomorphaceae TaxID=1... [more]
UPI0009E394CB9.120e-1467.31protein TSSC1-like n=1 Tax=Orbicella faveolata Tax... [more]
A0A8B6FI69_MYTGA1.060e-1367.31Uncharacterized protein n=2 Tax=Mytilus TaxID=6548... [more]
A0A8J1XZL4_OWEFU1.070e-1366.04Ofus.G112174 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A7R9JJN6_TIMCA1.140e-1363.46(California timema) hypothetical protein n=2 Tax=T... [more]
UPI00077AA6C21.330e-1367.31protein TSSC1-like n=1 Tax=Acropora digitifera Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99459contigM-pyrifera_M_contig99459:14..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score76.3
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog10228.TriadP27591
Preferred nameTSSC1
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0032386,GO:0032388,GO:0032879,GO:0040012,GO:0040017,GO:0046662,GO:0048518,GO:0048520,GO:0050789,GO:0050795,GO:0051049,GO:0051050,GO:0051239,GO:0051240,GO:0060341,GO:0065007,GO:0090325,GO:0090326,GO:1901046,GO:1903649,GO:1903651,GO:1904809,GO:1904811,GO:2000241,GO:2000243
EggNOG free text desc.positive regulation of dense core granule transport
EggNOG OGs38S56@33154,3BEFS@33208,KOG1007@1,KOG1007@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.2108767-CDS-M-pyrifera_M_contig99459:13..2231622816912.2108767-CDS-M-pyrifera_M_contig99459:13..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99459 14..223 +
1692278251.4271338-CDS-M-pyrifera_M_contig99459:13..2231692278251.4271338-CDS-M-pyrifera_M_contig99459:13..223Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99459 14..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99459.22880.1prot_M-pyrifera_M_contig99459.22880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99459 14..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99459.22880.1

>prot_M-pyrifera_M_contig99459.22880.1 ID=prot_M-pyrifera_M_contig99459.22880.1|Name=mRNA_M-pyrifera_M_contig99459.22880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
EGECSHARKRAAHGVDHLIKTYDEHEDSVYSVAWSCGSDPFVFASLSYDG
RLVVCRVPQAEQDRVLLSA*
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mRNA from alignment at M-pyrifera_M_contig99459:14..223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99459.22880.1 ID=mRNA_M-pyrifera_M_contig99459.22880.1|Name=mRNA_M-pyrifera_M_contig99459.22880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig99459:14..223+ (Macrocystis pyrifera P11B4 male)
GAAGGCGAATGCTCGCATGCGAGGAAGCGCGCCGCCCATGGCGTCGACCA
CTTGATCAAGACCTACGACGAGCATGAGGACAGCGTCTACAGCGTGGCGT
GGAGCTGTGGGTCGGACCCCTTCGTGTTTGCGTCTCTCTCGTACGACGGC
CGCCTGGTGGTGTGCCGTGTGCCGCAAGCCGAGCAGGACCGCGTACTTCT
TTCTGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99459:14..223+

>mRNA_M-pyrifera_M_contig99459.22880.1 ID=mRNA_M-pyrifera_M_contig99459.22880.1|Name=mRNA_M-pyrifera_M_contig99459.22880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig99459:14..223+ (Macrocystis pyrifera P11B4 male)
GAAGGCGAATGCTCGCATGCGAGGAAGCGCGCCGCCCATGGCGTCGACCA
CTTGATCAAGACCTACGACGAGCATGAGGACAGCGTCTACAGCGTGGCGT
GGAGCTGTGGGTCGGACCCCTTCGTGTTTGCGTCTCTCTCGTACGACGGC
CGCCTGGTGGTGTGCCGTGTGCCGCAAGCCGAGCAGGACCGCGTACTTCT
TTCTGCCTAGGAAGGCGAATGCTCGCATGCGAGGAAGCGCGCCGCCCATG
GCGTCGACCACTTGATCAAGACCTACGACGAGCATGAGGACAGCGTCTAC
AGCGTGGCGTGGAGCTGTGGGTCGGACCCCTTCGTGTTTGCGTCTCTCTC
GTACGACGGCCGCCTGGTGGTGTGCCGTGTGCCGCAAGCCGAGCAGGACC
GCGTACTTCTTTCTGCCTAG
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