mRNA_M-pyrifera_M_contig99452.22877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99452.22877.1
Unique NamemRNA_M-pyrifera_M_contig99452.22877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A1Y1HRA5_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HRA5_KLENI)

HSP 1 Score: 106 bits (265), Expect = 7.560e-24
Identity = 59/153 (38.56%), Postives = 82/153 (53.59%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEIL--EQVHIGPNNKLVEDLLPVEMVQWFYGSTNAAWAETASAVAVLHFDLAVSHMLTAEDYA 456
            WD+      NPLK L+A+ A  + GV+PTH+ Y   H +  +DWLWSVG NP S TSHG T ++F +D A R+ V+ +L+ S   IN GI IL  E+ H      L +  LP+  +   Y      W +   AV  L F  A SH+   + +A
Sbjct:  784 WDLS-----NPLKSLVAAIAQHVAGVLPTHVGYSIPHGAVEKDWLWSVGANPFSATSHGWTLSKFHVDTAHRSHVIAALDASAEHINLGIHILSKEKNHADTFGALRK--LPLSQLMTTYSHVITLWMQIVVAVEELEFGSATSHIARLDQHA 929          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A7S4P4L2_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P4L2_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 3.020e-23
Identity = 47/108 (43.52%), Postives = 73/108 (67.59%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIGPNNKLVEDL 327
            WD++     NPLKPLLA+ ++ + G++P H+S+  A     QDW WSVGD+PLS+TSH   FN+ Q D AQR+ V+ +L +SI   N+G++IL+++ +    KL+E +
Sbjct:   21 WDLQ-----NPLKPLLAATSMLVSGLLPLHLSFSEAKSCGFQDWSWSVGDSPLSQTSHQAHFNKIQQDVAQRHYVLAALNESIHHANKGVKILQRLSLP--KKLIEKM 121          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A1D1Z4U5_9ARAE (Uncharacterized protein y4kD (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1Z4U5_9ARAE)

HSP 1 Score: 101 bits (251), Expect = 5.780e-22
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVH 294
            WD+R      P+K  +A+AA  L G++P H+ Y  AHE+A +DW+WSVG +PLS TSHG   +RFQ D+  R+ ++TSLE+SI  +NE I +L   H
Sbjct:  804 WDLR-----RPIKAAIAAAAEHLAGLLPLHLVYSQAHETAIEDWIWSVGCSPLSITSHGWQISRFQSDSLSRSYIITSLEESIQAVNEAIHLLLMEH 895          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A7I8LG95_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LG95_SPIIN)

HSP 1 Score: 100 bits (248), Expect = 1.450e-21
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   16 LTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIGPNNKLVEDLLPVEMVQWFYGSTNAAWAETASAVAVLHFDLAVSHMLTAED 450
            L  +R P+K  +A+ A  + G++P H+ Y PAHE+A +DW+WSVG +PLS TSHG   +RFQ D   R+ ++TSLE+SI ++NE I +L           V       +V+  Y S    W   ++    L FD A+  +   ED
Sbjct:  746 LLDLRMPIKAAIAATAEHIAGLLPPHLVYSPAHETAVEDWMWSVGCSPLSITSHGWQISRFQSDTISRSYIITSLEESIQVVNEAIHLLLMERTTEKGFKVFQPQQRVLVEK-YNSVVGLWRRISTISGELEFDNALRLLHILED 889          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A3S4PFP2_9MAGN (Uncharacterized protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S4PFP2_9MAGN)

HSP 1 Score: 98.6 bits (244), Expect = 4.970e-21
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIGPNNKLV 318
            WD+R      P+K  LA+ A  L G++P H+ Y  AHE+A +DW+WSVG NPLS TS G   +RFQ D   R+ ++++LE+SI L+N  + +LE+  +   N +V
Sbjct:  695 WDLR-----RPIKAALAATAEHLAGLLPLHLVYSQAHETAIEDWIWSVGCNPLSITSQGWQVSRFQTDTIARSYIISALEESIQLVNAAVHLLERELVNKYNAVV 794          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: I1P0B3_ORYGL (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=I1P0B3_ORYGL)

HSP 1 Score: 98.2 bits (243), Expect = 5.920e-21
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEIL 282
            WD+R      P+K  +A+ A ++ G++P+H++Y PAHE+AT+DW WSVG NPLS TS G   + FQ D   RN ++T++E+SI +IN  I+ L
Sbjct:  358 WDLR-----RPVKAAIAATAEYVSGLLPSHLAYSPAHETATEDWTWSVGCNPLSITSKGWQLSEFQRDVIARNYIITAVEESIQIINSAIQQL 445          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: J3LCT0_ORYBR (Uncharacterized protein n=27 Tax=Oryzinae TaxID=1648021 RepID=J3LCT0_ORYBR)

HSP 1 Score: 98.2 bits (243), Expect = 6.830e-21
Identity = 42/93 (45.16%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEIL 282
            WD+R      P+K  +A+ A ++ G++P+H++Y PAHE+A++DW WSVG NPLS TS G   + FQ DA  RN +VT++E+SI ++N  ++ L
Sbjct:  749 WDLR-----RPVKAAIAATAEYVSGLLPSHLAYSPAHETASEDWTWSVGCNPLSITSEGWQISEFQRDAIARNYIVTAVEESIRIVNSAVQRL 836          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A068V196_COFCA (Uncharacterized protein n=5 Tax=Coffea TaxID=13442 RepID=A0A068V196_COFCA)

HSP 1 Score: 98.2 bits (243), Expect = 6.920e-21
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   16 LTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIGPNNKLVEDLLPVEMVQWFYGSTNAAWAETASAVAVLHFDLAVSHMLTAED 450
            L  +R P+K  +AS A  L G++P H+ Y  AHE+A +DW+WSVG NPLS TS G   ++FQ D   R+ ++T+LE+SI ++N  I +L               +  E+V   Y    + W   ++  A L +D A+  + T ED
Sbjct:  880 LLDLRRPIKAAMASVAEHLAGLLPLHLVYSQAHETAVEDWIWSVGCNPLSITSQGWHISKFQSDTIARSYILTTLEESIQIVNSAIHLLVVERTSEQTFKAFQSMERELVNK-YNYVVSLWRRISTVTAELRYDNAMGLLNTLED 1023          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: A0A5B7B848_DAVIN (Uncharacterized protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B848_DAVIN)

HSP 1 Score: 94.4 bits (233), Expect = 1.150e-20
Identity = 44/97 (45.36%), Postives = 61/97 (62.89%), Query Frame = 1
Query:    4 WDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVH 294
            WD+R      P+K  LA+ A  L G++P H+ Y  AHE+A +DW+WSVG NPLS TS G   ++FQ D   R+ ++T LE+SI L+N  I +L   H
Sbjct:  158 WDLR-----RPIKAALAAVAEHLAGLLPLHLVYSQAHETAVEDWIWSVGCNPLSITSQGWHISQFQSDTIARSYILTILEESIQLVNSAIHLLVMEH 249          
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Match: UPI0010A5304E (uncharacterized protein LOC114727689 isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A5304E)

HSP 1 Score: 97.4 bits (241), Expect = 1.270e-20
Identity = 51/142 (35.92%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   25 VRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVGDNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIGPNNKLVEDLLPVEMVQWFYGSTNAAWAETASAVAVLHFDLAVSHMLTAED 450
            +R P+K  +A+AA  L G++P H+ Y  AHESA +DW WSVG NPLS TS G   ++FQ D+  R+ ++T+LE+SI L+N  I +L           +      ++V   Y    + W   ++    L +D A+  + T ED
Sbjct:  758 LRQPIKAAVAAAAEHLAGLLPLHLVYSQAHESAIEDWTWSVGCNPLSITSQGWHISQFQSDSVARSYIITTLEESIQLVNSAIHLLLMERTNEKTFKIFKSQEYDLVNK-YNYVASLWKRVSTVTGELRYDEALRLLNTLED 898          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99452.22877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1HRA5_KLENI7.560e-2438.56Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7S4P4L2_9EUKA3.020e-2343.52Hypothetical protein (Fragment) n=2 Tax=Paramoeba ... [more]
A0A1D1Z4U5_9ARAE5.780e-2247.42Uncharacterized protein y4kD (Fragment) n=1 Tax=An... [more]
A0A7I8LG95_SPIIN1.450e-2137.24Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A3S4PFP2_9MAGN4.970e-2142.86Uncharacterized protein n=1 Tax=Cinnamomum micrant... [more]
I1P0B3_ORYGL5.920e-2146.24Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]
J3LCT0_ORYBR6.830e-2145.16Uncharacterized protein n=27 Tax=Oryzinae TaxID=16... [more]
A0A068V196_COFCA6.920e-2135.86Uncharacterized protein n=5 Tax=Coffea TaxID=13442... [more]
A0A5B7B848_DAVIN1.150e-2045.36Uncharacterized protein (Fragment) n=1 Tax=Davidia... [more]
UPI0010A5304E1.270e-2035.92uncharacterized protein LOC114727689 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99452contigM-pyrifera_M_contig99452:46..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue9.3e-19
Seed eggNOG ortholog44689.DDB0218668
Hectar predicted targeting categorysignal peptide
EggNOG OGs28I8K@1,2QQIX@2759,3XCYH@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.108295-CDS-M-pyrifera_M_contig99452:45..5071622816912.108295-CDS-M-pyrifera_M_contig99452:45..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99452 46..507 +
1692278251.3773131-CDS-M-pyrifera_M_contig99452:45..5071692278251.3773131-CDS-M-pyrifera_M_contig99452:45..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99452 46..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99452.22877.1prot_M-pyrifera_M_contig99452.22877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99452 46..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99452.22877.1

>prot_M-pyrifera_M_contig99452.22877.1 ID=prot_M-pyrifera_M_contig99452.22877.1|Name=mRNA_M-pyrifera_M_contig99452.22877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
RWDIRLTAVRNPLKPLLASAALFLGGVIPTHISYDPAHESATQDWLWSVG
DNPLSRTSHGTTFNRFQIDAAQRNMVVTSLEKSIALINEGIEILEQVHIG
PNNKLVEDLLPVEMVQWFYGSTNAAWAETASAVAVLHFDLAVSHMLTAED
YALQ
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mRNA from alignment at M-pyrifera_M_contig99452:46..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99452.22877.1 ID=mRNA_M-pyrifera_M_contig99452.22877.1|Name=mRNA_M-pyrifera_M_contig99452.22877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig99452:46..507+ (Macrocystis pyrifera P11B4 male)
AGGTGGGATATTAGGCTGACGGCGGTAAGGAACCCGCTGAAGCCCCTCTT GGCGTCTGCGGCTCTCTTCCTCGGAGGTGTGATTCCCACGCACATCAGCT ACGACCCTGCACACGAGAGCGCCACCCAGGATTGGCTGTGGTCGGTAGGA GACAACCCTCTCTCCAGGACATCGCACGGCACCACCTTCAACAGATTCCA AATCGACGCAGCCCAGCGCAACATGGTAGTCACTTCCCTGGAGAAGTCGA TTGCTCTCATCAACGAGGGCATCGAGATCTTGGAGCAGGTCCACATCGGG CCCAACAACAAGCTCGTCGAGGACCTCCTGCCTGTCGAGATGGTGCAGTG GTTCTACGGCAGCACCAACGCCGCCTGGGCAGAGACTGCCTCTGCTGTTG CGGTGCTGCACTTCGACCTGGCCGTCTCCCATATGCTGACGGCCGAGGAT TACGCTCTCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99452:46..507+

>mRNA_M-pyrifera_M_contig99452.22877.1 ID=mRNA_M-pyrifera_M_contig99452.22877.1|Name=mRNA_M-pyrifera_M_contig99452.22877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig99452:46..507+ (Macrocystis pyrifera P11B4 male)
AGGTGGGATATTAGGCTGACGGCGGTAAGGAACCCGCTGAAGCCCCTCTT
GGCGTCTGCGGCTCTCTTCCTCGGAGGTGTGATTCCCACGCACATCAGCT
ACGACCCTGCACACGAGAGCGCCACCCAGGATTGGCTGTGGTCGGTAGGA
GACAACCCTCTCTCCAGGACATCGCACGGCACCACCTTCAACAGATTCCA
AATCGACGCAGCCCAGCGCAACATGGTAGTCACTTCCCTGGAGAAGTCGA
TTGCTCTCATCAACGAGGGCATCGAGATCTTGGAGCAGGTCCACATCGGG
CCCAACAACAAGCTCGTCGAGGACCTCCTGCCTGTCGAGATGGTGCAGTG
GTTCTACGGCAGCACCAACGCCGCCTGGGCAGAGACTGCCTCTGCTGTTG
CGGTGCTGCACTTCGACCTGGCCGTCTCCCATATGCTGACGGCCGAGGAT
TACGCTCTCCAGAGGTGGGATATTAGGCTGACGGCGGTAAGGAACCCGCT
GAAGCCCCTCTTGGCGTCTGCGGCTCTCTTCCTCGGAGGTGTGATTCCCA
CGCACATCAGCTACGACCCTGCACACGAGAGCGCCACCCAGGATTGGCTG
TGGTCGGTAGGAGACAACCCTCTCTCCAGGACATCGCACGGCACCACCTT
CAACAGATTCCAAATCGACGCAGCCCAGCGCAACATGGTAGTCACTTCCC
TGGAGAAGTCGATTGCTCTCATCAACGAGGGCATCGAGATCTTGGAGCAG
GTCCACATCGGGCCCAACAACAAGCTCGTCGAGGACCTCCTGCCTGTCGA
GATGGTGCAGTGGTTCTACGGCAGCACCAACGCCGCCTGGGCAGAGACTG
CCTCTGCTGTTGCGGTGCTGCACTTCGACCTGGCCGTCTCCCATATGCTG
ACGGCCGAGGATTACGCTCTCCAG
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