mRNA_M-pyrifera_M_contig9940.22871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9940.22871.1
Unique NamemRNA_M-pyrifera_M_contig9940.22871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9940.22871.1 vs. uniprot
Match: D7FKK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK4_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 2.560e-68
Identity = 159/309 (51.46%), Postives = 193/309 (62.46%), Query Frame = 1 
Query:    1 QATLEEKAQRLKDRARIHRHNKLMLTARKDTGRLLQGAQAHWDARGRSIYGDAWDATEDGNLPLRNLFNLPREEIDSVREEASRLLCADWSESEFSSPLPAPP-----TRDQHATGHARDSRGAGREERRARKASARRGADFS--RPFPGAPYVDTRFVH-APSPVIVPQLDFTRLNTKAAGYPVALIRRVDGARLHGGSSPRQIERTQRENWSPNSK---RVTSQAGAPSGPTDITAGGQQRPEHRRTVVAASLQEPGLTHPNPPDVPVPKTAIVREGVGSERESLSARLARLAAIGHTAKVEPLELV 894
            +A LEEKAQRLK+RARIHRHN+L+LTARK  GRLL GAQ  WDARGRSIYGDAWD   DGN+PLR LFNLP+EEIDS+REEASRLL ++ + S+FSS LP PP      RD  A+   R +  + +++ RA  A ARRG  +   R    AP+VD+RFVH + SP +VP LDF RLN   + +P   +     A+  GG   R    TQ  N  PNS+   RV ++ G  SG T  T   Q+   H    V +S Q PGLTHP PP VP  +     E     RESLSARLARLAA     +V P+ELV
Sbjct:   52 EALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESEPA-SDFSS-LPTPPGQQRRVRDGSASS-VRRTTDSDQDDHRAMTAPARRGPAYGNGRSPTAAPFVDSRFVHLSTSPAVVPPLDFARLNNDPSKFPPGDVWSYPAAK--GGEMLRDRLPTQDRN--PNSRQRMRVQARNGPASGHT--TRDDQEL--HGGPAVISSFQAPGLTHPEPPAVPFLRAKPETESKELGRESLSARLARLAAGRTPGRVVPVELV 349
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BLAST of mRNA_M-pyrifera_M_contig9940.22871.1 vs. uniprot
Match: A0A6H5JIG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 5.400e-43
Identity = 82/119 (68.91%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 QATLEEKAQRLKDRARIHRHNKLMLTARKDTGRLLQGAQAHWDARGRSIYGDAWDATEDGNLPLRNLFNLPREEIDSVREEASRLLCADWSESEFSSPLPAPPTRDQHAT-GHARDSRG 354
            +A LEEKAQRLK+RARIHRHN+L+LTARK  GRLL GAQ  WDARGRSIYGDAWD   DGN+PLR LFNLP+EEIDS+REEASRLL ++W  S+F S LP PP + + A  G A  +RG
Sbjct:   52 EALLEEKAQRLKERARIHRHNRLVLTARKGAGRLLHGAQERWDARGRSIYGDAWDDPHDGNVPLRTLFNLPKEEIDSIREEASRLLESEWPASDFLS-LPTPPGQQRRARDGSASSTRG 169
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BLAST of mRNA_M-pyrifera_M_contig9940.22871.1 vs. uniprot
Match: A0A835ZJ30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ30_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.490e-17
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 1 
Query:    1 QATLEEKAQRLKDRARIHRHNKLMLTARKDTGRLL-QGAQAHWDARGRSIYGDAWDATEDGNLPLRNLFNLPREEIDSVREEASRLL--------------------CADWSESEFSSPLPAPPTRDQHATGHARDSRGAGREERRARKASARRGADFSRPFPGAPYVDTRFV 456
            +A L+EK Q ++ R ++H  N++MLTAR  T R++ +   A WD +GR++YG AWD   DGNLPLR LFNLP EEI + + +A++L+                     A      ++SP P PP      T  A+    A      AR   A R A  SRP   APY D RFV
Sbjct:   52 EAALDEKIQAMQQRKKMHSTNRMMLTARTKTARVVDEEGGADWDEKGRAVYGSAWDEPNDGNLPLRELFNLPDEEIRAAKAQAAQLVEMQTYRQLTVRHTAQPPPTTAAPSPRPHYTSPRPTPPL---PVTSSAQQQHPAAEPLMTAR---ANRAAQ-SRPAYEAPYDDPRFV 217
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BLAST of mRNA_M-pyrifera_M_contig9940.22871.1 vs. uniprot
Match: A0A7S4DFT0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFT0_HETAK)

HSP 1 Score: 52.8 bits (125), Expect = 2.980e-5
Identity = 20/42 (47.62%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:  100 LLQGAQAHWDARGRSIYGDAWDATEDGNLPLRNLFNLPREEI 225
            +++   + +DA+GR +YGDAWD   DGN PLR L  LP +E+
Sbjct:   69 MVEDGISQYDAKGREVYGDAWDTPVDGNAPLRELLALPEDEL 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9940.22871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKK4_ECTSI2.560e-6851.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG2_9PHAE5.400e-4368.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZJ30_9STRA3.490e-1738.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DFT0_HETAK2.980e-547.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9940contigM-pyrifera_M_contig9940:6113..7867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue4.5e-48
Seed eggNOG ortholog2880.D7FKK4
Hectar predicted targeting categoryother localisation
EggNOG OGs2EYZZ@1,2T0E5@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001760.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size948
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9940.22871.1prot_M-pyrifera_M_contig9940.22871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9940 6182..7816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.791233-UTR-M-pyrifera_M_contig9940:6112..61811622816911.791233-UTR-M-pyrifera_M_contig9940:6112..6181Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9940 6113..6181 +
1692278251.2331986-UTR-M-pyrifera_M_contig9940:6112..61811692278251.2331986-UTR-M-pyrifera_M_contig9940:6112..6181Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9940 6113..6181 +
1622816911.8619802-UTR-M-pyrifera_M_contig9940:7816..78671622816911.8619802-UTR-M-pyrifera_M_contig9940:7816..7867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9940 7817..7867 +
1692278251.285686-UTR-M-pyrifera_M_contig9940:7816..78671692278251.285686-UTR-M-pyrifera_M_contig9940:7816..7867Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9940 7817..7867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.8075755-CDS-M-pyrifera_M_contig9940:6181..63061622816911.8075755-CDS-M-pyrifera_M_contig9940:6181..6306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 6182..6306 +
1692278251.2457128-CDS-M-pyrifera_M_contig9940:6181..63061692278251.2457128-CDS-M-pyrifera_M_contig9940:6181..6306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 6182..6306 +
1622816911.8218052-CDS-M-pyrifera_M_contig9940:6689..68461622816911.8218052-CDS-M-pyrifera_M_contig9940:6689..6846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 6690..6846 +
1692278251.256863-CDS-M-pyrifera_M_contig9940:6689..68461692278251.256863-CDS-M-pyrifera_M_contig9940:6689..6846Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 6690..6846 +
1622816911.8361695-CDS-M-pyrifera_M_contig9940:7219..74041622816911.8361695-CDS-M-pyrifera_M_contig9940:7219..7404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 7220..7404 +
1692278251.2699435-CDS-M-pyrifera_M_contig9940:7219..74041692278251.2699435-CDS-M-pyrifera_M_contig9940:7219..7404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 7220..7404 +
1622816911.8490086-CDS-M-pyrifera_M_contig9940:7455..78161622816911.8490086-CDS-M-pyrifera_M_contig9940:7455..7816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 7456..7816 +
1692278251.2780929-CDS-M-pyrifera_M_contig9940:7455..78161692278251.2780929-CDS-M-pyrifera_M_contig9940:7455..7816Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9940 7456..7816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9940.22871.1

>prot_M-pyrifera_M_contig9940.22871.1 ID=prot_M-pyrifera_M_contig9940.22871.1|Name=mRNA_M-pyrifera_M_contig9940.22871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp
MLTARKDTGRLLQGAQAHWDARGRSIYGDAWDATEDGNLPLRNLFNLPRE
EIDSVREEASRLLCADWSESEFSSPLPAPPTRDQHATGHARDSRGAGREE
RRARKASARRGADFSRPFPGAPYVDTRFVHAPSPVIVPQLDFTRLNTKAA
GYPVALIRRVDGARLHGGSSPRQIERTQRENWSPNSKRVTSQAGAPSGPT
DITAGGQQRPEHRRTVVAASLQEPGLTHPNPPDVPVPKTAIVREGVGSER
ESLSARLARLAAIGHTAKVEPLELV*
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mRNA from alignment at M-pyrifera_M_contig9940:6113..7867+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9940.22871.1 ID=mRNA_M-pyrifera_M_contig9940.22871.1|Name=mRNA_M-pyrifera_M_contig9940.22871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1755bp|location=Sequence derived from alignment at M-pyrifera_M_contig9940:6113..7867+ (Macrocystis pyrifera P11B4 male)
CAGGCAACACTGGAAGAAAAAGCACAGCGACTGAAGGATCGCGCTCGGAT
TCACAGGCACAACAAACTGATGCTCACGGCCCGCAAGGACACAGGCCGCT
TGCTACAGGGCGCGCAGGCGCACTGGGATGCGAGAGGAAGGTCGATATAC
GGCGACGCATGGGATGCAACCGAAGACGGAAATCTACCACTAAGGTGCAA
ACCAGTTGCAGCAGTACGGTGTGTCGCAATACGCGTAAACAAGTGTCTCT
TGGGCGAACCTCAAGCTTAGTCAAACCATCGTTACTTTCCATTCGATACG
ATGACAGGCTACTTGTGTGTGGAGCATATGTATGCAGCGCACGGGTATCG
GGGAACGGATTTATAAGAGCAGCGCGGACGCCACTCTACAATAGAGCATT
ACACAGCCGTCCGTTGGGCTGGCCATCCGGCAGTACTCCGGGGTTGCGAG
CCGTTAAGAACGTTGCATTCGGCGCGACTCGCAAGCTCTATCATACCTCA
AACGTTTTGGCAATTCATTTTGCTGAACGTGTGACCAACGGCCCCTTCGA
TGGCGGAACTCGTGTGCTTGCCAACAGGAATCTGTTCAACCTTCCTAGGG
AAGAAATCGACAGCGTGAGAGAAGAAGCTAGCAGGCTCCTCTGCGCCGAC
TGGTCAGAAAGTGAATTCTCGTCACCGTTGCCAGCTCCGCCGACGCGCGA
TCAACACGCGACTGGTCACGCCCGTGACAGTAGAGTGTGGAGCGCCGCGA
AACCAGCTACAGAGGCAAGCGCTGGAATATATGGTGCCACTCTAAAGAGC
AGGGCTGCCTCCGTTGCACGCATGCATTGTCCGCGTTGCGAAGCGCGATC
GGTGTACCGGGGGGTCAAATCCCCCCGACGATCATGAGTAAACGAATAGA
GTACGAAACGTTTCCCGGCAGTCGAACCGTTTTTGCGTCAAGACTCCGCC
CACTCGCCGGCCTGCTCGCTCGCTCGCTCCGCCACCCACCGGCAGTGTTA
CCCTACTGTTTGGCGGTGCGAACCTCATGACGCTCTAGAGCCATATTTTT
TCTGACCATATCTTGCCTTTCTATGTGTTCTCTTTCGTCTCGTGGGTCAC
TCCATAGGGCGCCGGTCGGGAAGAGCGACGGGCGAGAAAAGCGTCGGCTC
GCCGGGGGGCTGATTTCAGCCGGCCATTCCCAGGCGCGCCATACGTCGAT
ACGCGCTTCGTGCACGCCCCCTCCCCGGTCATCGTGCCGCAGCTAGACTT
CACGAGGCTCAACACGAAGGCGGCCGGCTATCCAGTAGCCCTGTACGGCG
AGGGCGAGCTTCGACCCCGAAAGGCGGCTGCAGCAACTGGTAGAATTCGG
CGCGTTGATGGCGCGCGTCTACACGGCGGGAGCAGCCCGCGGCAGATCGA
GCGGACACAACGGGAAAATTGGTCGCCCAATAGCAAACGTGTAACCTCAC
AAGCTGGCGCCCCTTCTGGCCCTACTGATATCACAGCCGGAGGCCAACAG
CGACCCGAGCACCGGAGAACGGTCGTTGCGGCCTCGCTACAGGAGCCGGG
CCTAACCCATCCAAACCCCCCAGATGTGCCAGTCCCGAAAACGGCAATAG
TGCGAGAAGGTGTCGGTTCGGAACGCGAGAGCTTGTCGGCACGGCTAGCG
AGGCTTGCCGCCATCGGACACACCGCCAAAGTAGAGCCCTTAGAGCTCGT
GTGATGCAACAGCAACAACAAACAACAACAACAACAACAATAAGCGCCTT
GAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9940:6113..7867+

>mRNA_M-pyrifera_M_contig9940.22871.1 ID=mRNA_M-pyrifera_M_contig9940.22871.1|Name=mRNA_M-pyrifera_M_contig9940.22871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1656bp|location=Sequence derived from alignment at M-pyrifera_M_contig9940:6113..7867+ (Macrocystis pyrifera P11B4 male)
ATGCTCACGGCCCGCAAGGACACAGGCCGCTTGCTACAGGGCGCGCAGGC
GCACTGGGATGCGAGAGGAAGGTCGATATACGGCGACGCATGGGATGCAA
CCGAAGACGGAAATCTACCACTAAGATGCTCACGGCCCGCAAGGACACAG
GCCGCTTGCTACAGGGCGCGCAGGCGCACTGGGATGCGAGAGGAAGGTCG
ATATACGGCGACGCATGGGATGCAACCGAAGACGGAAATCTACCACTAAG
GAATCTGTTCAACCTTCCTAGGGAAGAAATCGACAGCGTGAGAGAAGAAG
CTAGCAGGCTCCTCTGCGCCGACTGGTCAGAAAGTGAATTCTCGTCACCG
TTGCCAGCTCCGCCGACGCGCGATCAACACGCGACTGGTCACGCCCGTGA
CAGTAGAGAATCTGTTCAACCTTCCTAGGGAAGAAATCGACAGCGTGAGA
GAAGAAGCTAGCAGGCTCCTCTGCGCCGACTGGTCAGAAAGTGAATTCTC
GTCACCGTTGCCAGCTCCGCCGACGCGCGATCAACACGCGACTGGTCACG
CCCGTGACAGTAGAGGCGCCGGTCGGGAAGAGCGACGGGCGAGAAAAGCG
TCGGCTCGCCGGGGGGCTGATTTCAGCCGGCCATTCCCAGGCGCGCCATA
CGTCGATACGCGCTTCGTGCACGCCCCCTCCCCGGTCATCGTGCCGCAGC
TAGACTTCACGAGGCTCAACACGAAGGCGGCCGGCTATCCAGTAGCCCTG
GCGCCGGTCGGGAAGAGCGACGGGCGAGAAAAGCGTCGGCTCGCCGGGGG
GCTGATTTCAGCCGGCCATTCCCAGGCGCGCCATACGTCGATACGCGCTT
CGTGCACGCCCCCTCCCCGGTCATCGTGCCGCAGCTAGACTTCACGAGGC
TCAACACGAAGGCGGCCGGCTATCCAGTAGCCCTAATTCGGCGCGTTGAT
GGCGCGCGTCTACACGGCGGGAGCAGCCCGCGGCAGATCGAGCGGACACA
ACGGGAAAATTGGTCGCCCAATAGCAAACGTGTAACCTCACAAGCTGGCG
CCCCTTCTGGCCCTACTGATATCACAGCCGGAGGCCAACAGCGACCCGAG
CACCGGAGAACGGTCGTTGCGGCCTCGCTACAGGAGCCGGGCCTAACCCA
TCCAAACCCCCCAGATGTGCCAGTCCCGAAAACGGCAATAGTGCGAGAAG
GTGTCGGTTCGGAACGCGAGAGCTTGTCGGCACGGCTAGCGAGGCTTGCC
GCCATCGGACACACCGCCAAAGTAGAGCCCTTAGAGCTCGTGTGAAATTC
GGCGCGTTGATGGCGCGCGTCTACACGGCGGGAGCAGCCCGCGGCAGATC
GAGCGGACACAACGGGAAAATTGGTCGCCCAATAGCAAACGTGTAACCTC
ACAAGCTGGCGCCCCTTCTGGCCCTACTGATATCACAGCCGGAGGCCAAC
AGCGACCCGAGCACCGGAGAACGGTCGTTGCGGCCTCGCTACAGGAGCCG
GGCCTAACCCATCCAAACCCCCCAGATGTGCCAGTCCCGAAAACGGCAAT
AGTGCGAGAAGGTGTCGGTTCGGAACGCGAGAGCTTGTCGGCACGGCTAG
CGAGGCTTGCCGCCATCGGACACACCGCCAAAGTAGAGCCCTTAGAGCTC
GTGTGA
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