mRNA_M-pyrifera_M_contig99396.22868.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99396.22868.1
Unique NamemRNA_M-pyrifera_M_contig99396.22868.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99396.22868.1 vs. uniprot
Match: A0A2I0AFE1_9ASPA (Protein arginine N-methyltransferase 2 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AFE1_9ASPA)

HSP 1 Score: 55.5 bits (132), Expect = 2.380e-7
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   13 EEFCAAARAGDCARLTRLLERGADVNCRTQDGESPLLWASNGGFVAAVRLLLEAGA 180
            E  CAAA AGDCARL  LL  GAD +    DG++PL+ A+ GG   AVR LL+ GA
Sbjct:    7 EILCAAAVAGDCARLRELLSSGADPSFFDSDGKTPLMHAAAGGHADAVRCLLDDGA 62
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BLAST of mRNA_M-pyrifera_M_contig99396.22868.1 vs. uniprot
Match: A0A1V9ZSZ9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSZ9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 5.420e-6
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   13 EEFCAAARAGDCARLTRLLERGADVNCRTQDGESPLLWASNGGFVAAVRLLLEAGANVGA 192
            +  CAAARAGD ARL  LLE GA V      G +PL  A  GG VA +  L+  GA+V A
Sbjct:    3 DAVCAAARAGDMARLHELLEEGASVRNMRWSGVTPLHRACEGGHVAVIETLVSHGADVNA 62
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BLAST of mRNA_M-pyrifera_M_contig99396.22868.1 vs. uniprot
Match: UPI001EE50F8E (palmitoyltransferase AKR1-like isoform X1 n=11 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE50F8E)

HSP 1 Score: 49.7 bits (117), Expect = 2.730e-5
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:   13 EEFCAAARAGDCARLTRLLERG-ADVNCRTQDGESPLLWASNGGFVAAVRLLLEAGANV 186
            ++   A R G+ A + R+L+ G ADVNCR+ DG +P++WA+ GG    V LL+  GA+V
Sbjct:  260 DDLHVACREGNLAEVKRILDTGRADVNCRSVDGMTPVMWAALGGHRDVVELLVSRGADV 318
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BLAST of mRNA_M-pyrifera_M_contig99396.22868.1 vs. uniprot
Match: UPI0016632183 (ankyrin repeat domain-containing protein n=2 Tax=Tsuneonella deserti TaxID=2035528 RepID=UPI0016632183)

HSP 1 Score: 49.3 bits (116), Expect = 3.680e-5
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:    1 DVSAEEFCAAARAGDCARLTRLLERGADVNCRTQDGESPLLWASNGGFVAAVRLLLEAGANVGAAH 198
            DV   +  AAAR    + ++ LL +GADVN     G +PL+ A+  G + AV+LL+ AGA+ GAAH
Sbjct:   49 DVVEMQLSAAARECRPSEVSALLAKGADVNSVNSGGYTPLMLAAGEGCIEAVKLLIAAGADTGAAH 114
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99396.22868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2I0AFE1_9ASPA2.380e-755.36Protein arginine N-methyltransferase 2 n=1 Tax=Apo... [more]
A0A1V9ZSZ9_9STRA5.420e-650.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI001EE50F8E2.730e-544.07palmitoyltransferase AKR1-like isoform X1 n=11 Tax... [more]
UPI00166321833.680e-543.94ankyrin repeat domain-containing protein n=2 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99396contigM-pyrifera_M_contig99396:10..207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.6707065-CDS-M-pyrifera_M_contig99396:9..2071622816911.6707065-CDS-M-pyrifera_M_contig99396:9..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99396 10..207 -
1692278251.172792-CDS-M-pyrifera_M_contig99396:9..2071692278251.172792-CDS-M-pyrifera_M_contig99396:9..207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99396 10..207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99396.22868.1prot_M-pyrifera_M_contig99396.22868.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99396 10..207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99396.22868.1

>prot_M-pyrifera_M_contig99396.22868.1 ID=prot_M-pyrifera_M_contig99396.22868.1|Name=mRNA_M-pyrifera_M_contig99396.22868.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
DVSAEEFCAAARAGDCARLTRLLERGADVNCRTQDGESPLLWASNGGFVA
AVRLLLEAGANVGAAH
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mRNA from alignment at M-pyrifera_M_contig99396:10..207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99396.22868.1 ID=mRNA_M-pyrifera_M_contig99396.22868.1|Name=mRNA_M-pyrifera_M_contig99396.22868.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig99396:10..207- (Macrocystis pyrifera P11B4 male)
GACGTTTCTGCCGAGGAGTTTTGTGCTGCAGCTCGTGCAGGAGACTGTGC
TCGACTCACAAGGTTGTTAGAGCGAGGAGCAGATGTGAATTGTCGCACAC
AGGATGGGGAAAGTCCATTGTTGTGGGCGTCCAACGGTGGTTTCGTTGCT
GCTGTTCGTTTGTTGTTGGAAGCTGGGGCAAATGTGGGAGCTGCACAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99396:10..207-

>mRNA_M-pyrifera_M_contig99396.22868.1 ID=mRNA_M-pyrifera_M_contig99396.22868.1|Name=mRNA_M-pyrifera_M_contig99396.22868.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig99396:10..207- (Macrocystis pyrifera P11B4 male)
GACGTTTCTGCCGAGGAGTTTTGTGCTGCAGCTCGTGCAGGAGACTGTGC
TCGACTCACAAGGTTGTTAGAGCGAGGAGCAGATGTGAATTGTCGCACAC
AGGATGGGGAAAGTCCATTGTTGTGGGCGTCCAACGGTGGTTTCGTTGCT
GCTGTTCGTTTGTTGTTGGAAGCTGGGGCAAATGTGGGAGCTGCACATGA
CGTTTCTGCCGAGGAGTTTTGTGCTGCAGCTCGTGCAGGAGACTGTGCTC
GACTCACAAGGTTGTTAGAGCGAGGAGCAGATGTGAATTGTCGCACACAG
GATGGGGAAAGTCCATTGTTGTGGGCGTCCAACGGTGGTTTCGTTGCTGC
TGTTCGTTTGTTGTTGGAAGCTGGGGCAAATGTGGGAGCTGCACAT
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