mRNA_M-pyrifera_M_contig99387.22864.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99387.22864.1
Unique NamemRNA_M-pyrifera_M_contig99387.22864.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99387.22864.1 vs. uniprot
Match: A0A358A2X2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A2X2_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 5.780e-19
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 LTVALDVTPLAGAPTGIHQVTKGLLRSLRHRDDVDVRGWMLSARGRPPDIDIPVRHSRIPAAVALRGWAR 210
            L V +D+TPL G PTGIHQ T+ L  +L  RDDV V GW+LSARG  P    P+R S IPAA A R WAR
Sbjct:    2 LRVGIDITPLVGPPTGIHQHTRHLTDALLSRDDVTVSGWLLSARGSKPRFAGPIRRSPIPAAPAARLWAR 71
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BLAST of mRNA_M-pyrifera_M_contig99387.22864.1 vs. uniprot
Match: A0A2E0SYE8_9ACTN (Glycos_transf_1 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SYE8_9ACTN)

HSP 1 Score: 82.8 bits (203), Expect = 3.950e-17
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 LTVALDVTPLAGAPTGIHQVTKGLLRSLRHRDDVDVRGWMLSARGRPPDIDIPVRHSRIPAAVALRGWAR 210
            L V +D+TPL G PTGIHQ T+ L  +L  RDDV V GW+LSARGR P    P+R S IPA+ A R WAR
Sbjct:    3 LRVGIDITPLVGPPTGIHQHTRHLTDALLSRDDVTVSGWLLSARGRKPRFAGPIRRSPIPASPAARLWAR 72
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BLAST of mRNA_M-pyrifera_M_contig99387.22864.1 vs. uniprot
Match: A0A2E7NGS8_9BACT (Glycos_transf_1 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E7NGS8_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.370e-9
Identity = 34/74 (45.95%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:    1 LTVALDVTPLAGAPTGIHQVTKGLLRSLRHRDDVDVRGWMLSARGRPPDIDIP----VRHSRIPAAVALRGWAR 210
            L VALDVTPLAG PTGI +   G+L +L     + + GWMLS R R     +P    V H  +PA +   GWAR
Sbjct:    5 LRVALDVTPLAGEPTGIARAVDGVLHALWTDQSLAISGWMLSGRRRARPDGVPAGMSVHHCPVPARLLHPGWAR 78
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BLAST of mRNA_M-pyrifera_M_contig99387.22864.1 vs. uniprot
Match: A0A381YZU4_9ZZZZ (Glycos_transf_1 domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381YZU4_9ZZZZ)

HSP 1 Score: 60.5 bits (145), Expect = 4.830e-9
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:    1 LTVALDVTPLAGAPTGIHQVTKGLLRSLRHRDDVDVRGWMLSARGR--PPDID--IPVRHSRIPAAVALRGWAR 210
            L VALDVTPLAG PTGI +   G++ +L     + V GWMLS R R  P  +   +PV H  +PA +    WAR
Sbjct:    5 LRVALDVTPLAGEPTGIARAINGVIHALCADPSLAVSGWMLSGRRRAHPSGVPSGVPVHHCPVPARLLHPSWAR 78
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99387.22864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A358A2X2_9ACTN5.780e-1958.57Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A2E0SYE8_9ACTN3.950e-1758.57Glycos_transf_1 domain-containing protein n=2 Tax=... [more]
A0A2E7NGS8_9BACT1.370e-945.95Glycos_transf_1 domain-containing protein n=1 Tax=... [more]
A0A381YZU4_9ZZZZ4.830e-945.95Glycos_transf_1 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99387contigM-pyrifera_M_contig99387:15..224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.4136055-CDS-M-pyrifera_M_contig99387:14..2241622816911.4136055-CDS-M-pyrifera_M_contig99387:14..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99387 15..224 -
1692278250.9951184-CDS-M-pyrifera_M_contig99387:14..2241692278250.9951184-CDS-M-pyrifera_M_contig99387:14..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99387 15..224 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99387.22864.1prot_M-pyrifera_M_contig99387.22864.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99387 15..224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99387.22864.1

>prot_M-pyrifera_M_contig99387.22864.1 ID=prot_M-pyrifera_M_contig99387.22864.1|Name=mRNA_M-pyrifera_M_contig99387.22864.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
LTVALDVTPLAGAPTGIHQVTKGLLRSLRHRDDVDVRGWMLSARGRPPDI
DIPVRHSRIPAAVALRGWAR
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mRNA from alignment at M-pyrifera_M_contig99387:15..224-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99387.22864.1 ID=mRNA_M-pyrifera_M_contig99387.22864.1|Name=mRNA_M-pyrifera_M_contig99387.22864.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig99387:15..224- (Macrocystis pyrifera P11B4 male)
CTCACCGTCGCGCTCGATGTCACCCCGTTGGCCGGGGCCCCCACCGGCAT
CCACCAGGTCACCAAGGGGCTCCTTCGATCGCTTCGCCACCGCGACGACG
TCGATGTCCGCGGCTGGATGCTCAGCGCTCGCGGCCGACCACCGGATATC
GACATCCCGGTTCGCCACAGCCGTATCCCGGCCGCGGTGGCGCTGCGCGG
GTGGGCCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99387:15..224-

>mRNA_M-pyrifera_M_contig99387.22864.1 ID=mRNA_M-pyrifera_M_contig99387.22864.1|Name=mRNA_M-pyrifera_M_contig99387.22864.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig99387:15..224- (Macrocystis pyrifera P11B4 male)
CTCACCGTCGCGCTCGATGTCACCCCGTTGGCCGGGGCCCCCACCGGCAT
CCACCAGGTCACCAAGGGGCTCCTTCGATCGCTTCGCCACCGCGACGACG
TCGATGTCCGCGGCTGGATGCTCAGCGCTCGCGGCCGACCACCGGATATC
GACATCCCGGTTCGCCACAGCCGTATCCCGGCCGCGGTGGCGCTGCGCGG
GTGGGCCCGGCTCACCGTCGCGCTCGATGTCACCCCGTTGGCCGGGGCCC
CCACCGGCATCCACCAGGTCACCAAGGGGCTCCTTCGATCGCTTCGCCAC
CGCGACGACGTCGATGTCCGCGGCTGGATGCTCAGCGCTCGCGGCCGACC
ACCGGATATCGACATCCCGGTTCGCCACAGCCGTATCCCGGCCGCGGTGG
CGCTGCGCGGGTGGGCCCGG
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