mRNA_M-pyrifera_M_contig99363.22861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99363.22861.1
Unique NamemRNA_M-pyrifera_M_contig99363.22861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4I7S2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I7S2_9EUKA)

HSP 1 Score: 178 bits (451), Expect = 5.130e-55
Identity = 86/132 (65.15%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQARASESAA 396
            FLNAFW+ +ED+AE LWQY   CA++D++ HEEG GLDE+ AH FLEKF+EALTVR +RTKLR TGA+ E +RPK VPLTH+LLF++N DWH LVNASQGDNS+EI +AQ+ LD V AAF ES  +  ++AA
Sbjct:    5 FLNAFWETNEDAAETLWQYVHTCADLDLEHHEEGCGLDEVNAHRFLEKFNEALTVRELRTKLRSTGALEESERPKLVPLTHFLLFKYNADWHKLVNASQGDNSEEIKKAQKMLDEVNAAFRESDEKHQQAAA 136          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4MGJ9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MGJ9_9EUKA)

HSP 1 Score: 171 bits (432), Expect = 1.020e-51
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQAR 378
            FLNAFW+  E  AE+LW+Y   C+++D+  HEEG GLDE+ AH FLE + E LTVR +R+KLR TGA+ E +RPK VPLTHYLLFR+NVDWH LVNASQGDNSKEIA+AQ  L+ VQAAF ES A+
Sbjct:   12 FLNAFWETVEADAEKLWKYVHTCSDLDLQDHEEGCGLDEVNAHRFLEVYGETLTVRELRSKLRSTGALEESERPKVVPLTHYLLFRYNVDWHTLVNASQGDNSKEIAKAQEMLNEVQAAFRESDAK 137          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4MQZ4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MQZ4_9EUKA)

HSP 1 Score: 176 bits (445), Expect = 1.730e-51
Identity = 88/125 (70.40%), Postives = 100/125 (80.00%), Query Frame = 1
Query:    1 FLNAFWDDH-EDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQ 372
            FLNAFW++  E  AERLW Y  KC+E+DI+ H EGSGLDEM AHVFLEKF E LTVR +R KLR TGAI E +RPK+VPLTHYLLFR+N DWH LVN+SQGDNS EIA AQ  L+ V AAF+ESQ
Sbjct:   31 FLNAFWEEFAEKEAERLWGYVNKCSEIDIENHGEGSGLDEMAAHVFLEKFAETLTVRELRAKLRSTGAIGESERPKKVPLTHYLLFRYNTDWHRLVNSSQGDNSAEIAHAQEMLNEVSAAFQESQ 155          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4M964_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M964_9EUKA)

HSP 1 Score: 174 bits (440), Expect = 1.790e-50
Identity = 84/123 (68.29%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEES 369
            FLNAFW+  E  AE+LW+Y   CA++D+  HEEG GLDE+ AH FLE + E LTVR +R+KLR TGA+ E +RPK VPLTHYLLFR+NVDWH LVNASQGDNSKEIA+AQ+ LD VQAAF ES
Sbjct:   30 FLNAFWETVESDAEKLWKYVHTCADLDLQDHEEGCGLDEVNAHRFLEVYGETLTVRELRSKLRSTGALEESERPKVVPLTHYLLFRYNVDWHALVNASQGDNSKEIAKAQKMLDEVQAAFRES 152          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4M3A7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3A7_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 7.170e-48
Identity = 83/129 (64.34%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQARASE 387
            +LNA WD  +  AE LW+Y  +CAE+D   HEEG GLDEM+AHVFLEKFDE LTVRA+R +LRETGAI + QRPK VPLTHYLLF++  DWH LVN++QGDN +EI +AQ+ L  V AAFE + ARA E
Sbjct:   26 YLNANWDTMQPDAELLWKYVERCAELDDQDHEEGCGLDEMKAHVFLEKFDETLTVRALRERLRETGAIGQSQRPKIVPLTHYLLFKYKSDWHKLVNSAQGDNQEEIEQAQQMLKDVIAAFEAAAARAKE 154          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4HV66_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HV66_9EUKA)

HSP 1 Score: 165 bits (418), Expect = 9.410e-47
Identity = 83/129 (64.34%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNAS-QGDNSKEIAEAQRKLDSVQAAFEESQARAS 384
            FLNAFWD  E  AERLW Y  K  E+D++ HEEGS LDEM+AHVFLEKFDE LTVR MR KLR TGAI E +RPK VPLTHYLL++++V+WH LV+ S QG N +E+ +A++ L  VQAAF+ES+A+AS
Sbjct:   23 FLNAFWDTKESEAERLWDYVQKLNELDLEHHEEGSALDEMKAHVFLEKFDETLTVREMRAKLRSTGAIGETERPKVVPLTHYLLYKYDVEWHKLVDESRQGSNKEELEKAEQMLAEVQAAFKESEAKAS 151          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4HSY8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HSY8_9EUKA)

HSP 1 Score: 160 bits (406), Expect = 1.040e-45
Identity = 83/133 (62.41%), Postives = 102/133 (76.69%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQARASESAAA 399
            FLNAFW   ED AE LWQ+  KC E+D+++HEEG+ LDEM AH FLE F+E +TVR MR KLR +GAI E + P  VP+TH L+FRF++DW  LVNASQGDN +EI +AQR L+ VQAA+EES  RASE+A A
Sbjct:   42 FLNAFWHKIEDQAETLWQFKHKCEELDLEKHEEGNALDEMSAHRFLEIFNETMTVREMRAKLRSSGAIGEGRVPN-VPITHILIFRFDIDWRYLVNASQGDNKEEIEKAQRMLEGVQAAYEESNERASEAAKA 173          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A7S4M4X9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M4X9_9EUKA)

HSP 1 Score: 157 bits (398), Expect = 2.090e-45
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 FLNAFWDDH-EDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNAS-QGDNSKEIAEAQRKLDSVQAAFEESQARASE 387
            FLN FW+   E  AE +WQY    + +D++ HEEG GLDEM+AHVFLEKFDE LTVR MR KLR TGAI E +RPK VPLTHYLL+++NVDWH LV+ + QGDN++E+ +A++ L  V AAF+ES+ARAS+
Sbjct:    3 FLNCFWEQFAEKEAETIWQYVDTNSTLDLENHEEGCGLDEMKAHVFLEKFDETLTVREMRAKLRSTGAIGESERPKTVPLTHYLLYKYNVDWHTLVDDTRQGDNAEEMEKAEQLLAEVTAAFQESEARASD 133          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: L8H4K6_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H4K6_ACACA)

HSP 1 Score: 154 bits (389), Expect = 1.370e-43
Identity = 78/127 (61.42%), Postives = 97/127 (76.38%), Query Frame = 1
Query:    1 FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQGDNSKEIAEAQRKLDSVQAAFEESQARA 381
            FLNAFWD  +  AE+LW++   CA++D  RH EG+ LDE+ AH FLE+  E LTV A+R +LR+TGAI +  RPK VPLTHYLL+R+ VDWHVLVN + GDNS EIAEAQR LDSV AAF E++ +A
Sbjct:   28 FLNAFWDQFQADAEKLWKHVQLCADLDAQRHAEGTALDELNAHRFLEQIGETLTVVALRERLRKTGAIGQTDRPKAVPLTHYLLWRYEVDWHVLVN-THGDNSAEIAEAQRLLDSVSAAFAEAERQA 153          
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Match: A0A6U1WWW6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1WWW6_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 1.400e-42
Identity = 82/131 (62.60%), Postives = 101/131 (77.10%), Query Frame = 1
Query:    1 FLNAFWDDH-EDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFDEALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNAS-QGDNSKEIAEAQRKLDSVQAAFEESQARASE 387
            FLN FW+D  E  AE +W Y    A +DI+ HEEG  LDEM+AHVFLEKFDE LTVR MR KLR TGAI E +RPK+VPLTHYLL+++NV+WH LV+ + QGDNS+E+ +A+R L  V AAF+ES+ RASE
Sbjct:  120 FLNCFWEDFAEKEAETIWNYVETNATLDIEEHEEGHALDEMKAHVFLEKFDETLTVREMRAKLRSTGAIGETERPKKVPLTHYLLYKYNVNWHSLVDETKQGDNSEEMEKAERLLAEVTAAFKESEERASE 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99363.22861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4I7S2_9EUKA5.130e-5565.15Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4MGJ9_9EUKA1.020e-5165.87Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4MQZ4_9EUKA1.730e-5170.40Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4M964_9EUKA1.790e-5068.29Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4M3A7_9EUKA7.170e-4864.34Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4HV66_9EUKA9.410e-4764.34Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4HSY8_9EUKA1.040e-4562.41Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4M4X9_9EUKA2.090e-4561.07Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
L8H4K6_ACACA1.370e-4361.42TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
A0A6U1WWW6_9EUKA1.400e-4262.60Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99363contigM-pyrifera_M_contig99363:132..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue5.7e-17
Seed eggNOG ortholog5759.rna_EHI_052780-1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C4AB@1,2S2VG@2759,3XE3F@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.3029184-CDS-M-pyrifera_M_contig99363:131..2841622816911.3029184-CDS-M-pyrifera_M_contig99363:131..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99363 132..284 +
1692278250.9304204-CDS-M-pyrifera_M_contig99363:131..2841692278250.9304204-CDS-M-pyrifera_M_contig99363:131..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99363 132..284 +
1622816911.3184571-CDS-M-pyrifera_M_contig99363:331..5771622816911.3184571-CDS-M-pyrifera_M_contig99363:331..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99363 332..577 +
1692278250.9429176-CDS-M-pyrifera_M_contig99363:331..5771692278250.9429176-CDS-M-pyrifera_M_contig99363:331..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99363 332..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99363.22861.1prot_M-pyrifera_M_contig99363.22861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99363 132..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99363.22861.1

>prot_M-pyrifera_M_contig99363.22861.1 ID=prot_M-pyrifera_M_contig99363.22861.1|Name=mRNA_M-pyrifera_M_contig99363.22861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
FLNAFWDDHEDSAERLWQYAIKCAEVDIDRHEEGSGLDEMQAHVFLEKFD
EALTVRAMRTKLRETGAIAEKQRPKQVPLTHYLLFRFNVDWHVLVNASQG
DNSKEIAEAQRKLDSVQAAFEESQARASESAAA
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mRNA from alignment at M-pyrifera_M_contig99363:132..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99363.22861.1 ID=mRNA_M-pyrifera_M_contig99363.22861.1|Name=mRNA_M-pyrifera_M_contig99363.22861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=446bp|location=Sequence derived from alignment at M-pyrifera_M_contig99363:132..577+ (Macrocystis pyrifera P11B4 male)
TTCCTCAACGCGTTTTGGGACGACCATGAGGACAGCGCAGAGCGCCTGTG GCAGTACGCTATCAAGTGCGCCGAAGTGGACATTGACCGGCACGAGGAGG GCAGCGGCCTGGACGAGATGCAGGCGCACGTCTTCCTCGAGAAGTTCGAC GAGGTATGCTGAGTTTGTTTTCTTCCCTTGTTAACATGCTGACGTGCCAG GCTCTCACCGTTCGCGCCATGAGGACGAAGCTTCGCGAGACTGGCGCCAT TGCTGAGAAGCAGAGGCCCAAGCAAGTGCCCCTTACTCATTACCTGCTGT TCCGCTTCAATGTCGACTGGCACGTCCTCGTCAATGCCTCGCAGGGAGAC AACTCGAAGGAGATCGCCGAGGCGCAGCGAAAGCTTGACTCCGTCCAGGC TGCCTTCGAGGAGAGCCAGGCCCGCGCAAGTGAGTCTGCTGCCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99363:132..577+

>mRNA_M-pyrifera_M_contig99363.22861.1 ID=mRNA_M-pyrifera_M_contig99363.22861.1|Name=mRNA_M-pyrifera_M_contig99363.22861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig99363:132..577+ (Macrocystis pyrifera P11B4 male)
TTCCTCAACGCGTTTTGGGACGACCATGAGGACAGCGCAGAGCGCCTGTG
GCAGTACGCTATCAAGTGCGCCGAAGTGGACATTGACCGGCACGAGGAGG
GCAGCGGCCTGGACGAGATGCAGGCGCACGTCTTCCTCGAGAAGTTCGAC
GAGTTCCTCAACGCGTTTTGGGACGACCATGAGGACAGCGCAGAGCGCCT
GTGGCAGTACGCTATCAAGTGCGCCGAAGTGGACATTGACCGGCACGAGG
AGGGCAGCGGCCTGGACGAGATGCAGGCGCACGTCTTCCTCGAGAAGTTC
GACGAGGCTCTCACCGTTCGCGCCATGAGGACGAAGCTTCGCGAGACTGG
CGCCATTGCTGAGAAGCAGAGGCCCAAGCAAGTGCCCCTTACTCATTACC
TGCTGTTCCGCTTCAATGTCGACTGGCACGTCCTCGTCAATGCCTCGCAG
GGAGACAACTCGAAGGAGATCGCCGAGGCGCAGCGAAAGCTTGACTCCGT
CCAGGCTGCCTTCGAGGAGAGCCAGGCCCGCGCAAGTGAGTCTGCTGCCG
CAGCTCTCACCGTTCGCGCCATGAGGACGAAGCTTCGCGAGACTGGCGCC
ATTGCTGAGAAGCAGAGGCCCAAGCAAGTGCCCCTTACTCATTACCTGCT
GTTCCGCTTCAATGTCGACTGGCACGTCCTCGTCAATGCCTCGCAGGGAG
ACAACTCGAAGGAGATCGCCGAGGCGCAGCGAAAGCTTGACTCCGTCCAG
GCTGCCTTCGAGGAGAGCCAGGCCCGCGCAAGTGAGTCTGCTGCCGCA
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