mRNA_M-pyrifera_M_contig99356.22857.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99356.22857.1
Unique NamemRNA_M-pyrifera_M_contig99356.22857.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99356.22857.1 vs. uniprot
Match: A0A7Y3KW38_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7Y3KW38_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 1.120e-11
Identity = 43/156 (27.56%), Postives = 68/156 (43.59%), Query Frame = 1 
Query:    1 VPVSIPMALLVAEQHAVAADSFRVHRDGFYLHMRIVSR-NPTTDHSNQLFGSVVGDGTHQAAQLRWGLEFSDGLRAVAGDMS-----KAGFNIRLRGASGSSGLMEMDAWVNAIPSPGPMRFHLSWPEGGIAETSFAVPTGDIISASETATQLWPD 450
            VPV +   L+ ++Q A+       +  GF   +  +SR NP       L   + G       +LR+G+ FSDG +A++   S     +A   +  RG  G       + W   +P  G M F   W +  + +TS  V    ++ A+  AT LWPD
Sbjct:   13 VPVDLSPLLVRSDQAAIIVSGLFAYPTGFAFSLEAISRLNPAPSPLGFLRPGIAGRDGSSGGELRFGIGFSDGSKALSRRNSMPSAERAVRRLHPRGGGGGGRKWSQEFWCEPLPPAGLMAFVFEWRDFAVPQTSIEVDASAVLEAASQATPLWPD 168
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BLAST of mRNA_M-pyrifera_M_contig99356.22857.1 vs. uniprot
Match: UPI0011EA6E86 (hypothetical protein n=1 Tax=Kitasatospora sp. MBT63 TaxID=1444768 RepID=UPI0011EA6E86)

HSP 1 Score: 50.8 bits (120), Expect = 9.200e-5
Identity = 50/168 (29.76%), Postives = 72/168 (42.86%), Query Frame = 1 
Query:    4 PVSIPMALLVAEQH--AVAADSFRVHRDGFY--LHMRIVSRNPTTDHSNQLFGSVVGDGTHQAA-QLRWGLEFSDGLRAVAGDMSKAGFNIRLR-------------GASGSSGLMEMDAWVNAIPSPGPMRFHLSWPEGGIAETSFAVPTGDIISASETATQL-WPD 450
            PVS+P+   +       V AD  RV   GF   LH+R   R         +         H +  QLR+G+ F DG RAVA    + G+++  R               SGS    +   WV  +P+ GP+    SW E G+ ET F +  GD + A+   T + WP+
Sbjct:   32 PVSLPLGRFLVRTPWLVVFADGLRVLPTGFEFALHVRRDLRPRDVARGEAVDWQPPFVQEHDSEDQLRFGVLFPDGRRAVA----QQGWSVEWRTPEGPRPPVIAPQDGSGSWDHWDQSFWVWGLPAGGPITVFYSWAEEGVPETRFELD-GDALRAAAAETLVFWPE 194
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99356.22857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y3KW38_9ACTN1.120e-1127.56Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
UPI0011EA6E869.200e-529.76hypothetical protein n=1 Tax=Kitasatospora sp. MBT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99356contigM-pyrifera_M_contig99356:31..483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.129976-UTR-M-pyrifera_M_contig99356:30..481622816911.129976-UTR-M-pyrifera_M_contig99356:30..48Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99356 31..48 +
1692278250.8548827-UTR-M-pyrifera_M_contig99356:30..481692278250.8548827-UTR-M-pyrifera_M_contig99356:30..48Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99356 31..48 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816911.142488-CDS-M-pyrifera_M_contig99356:48..4831622816911.142488-CDS-M-pyrifera_M_contig99356:48..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99356 49..483 +
1692278250.8732378-CDS-M-pyrifera_M_contig99356:48..4831692278250.8732378-CDS-M-pyrifera_M_contig99356:48..483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99356 49..483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99356.22857.1prot_M-pyrifera_M_contig99356.22857.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99356 49..483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99356.22857.1

>prot_M-pyrifera_M_contig99356.22857.1 ID=prot_M-pyrifera_M_contig99356.22857.1|Name=mRNA_M-pyrifera_M_contig99356.22857.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MALLVAEQHAVAADSFRVHRDGFYLHMRIVSRNPTTDHSNQLFGSVVGDG
THQAAQLRWGLEFSDGLRAVAGDMSKAGFNIRLRGASGSSGLMEMDAWVN
AIPSPGPMRFHLSWPEGGIAETSFAVPTGDIISASETATQLWPD*
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mRNA from alignment at M-pyrifera_M_contig99356:31..483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99356.22857.1 ID=mRNA_M-pyrifera_M_contig99356.22857.1|Name=mRNA_M-pyrifera_M_contig99356.22857.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig99356:31..483+ (Macrocystis pyrifera P11B4 male)
GTCCCGGTCTCGATTCCCATGGCTCTGCTGGTTGCCGAGCAGCATGCGGT
CGCTGCCGACTCGTTTCGAGTGCACCGAGACGGCTTCTATCTGCACATGC
GGATCGTCAGCCGCAACCCAACCACCGACCACAGCAACCAACTTTTTGGC
TCGGTCGTCGGAGACGGCACCCACCAAGCCGCTCAACTGCGTTGGGGCCT
CGAGTTCAGCGACGGCCTGCGAGCAGTTGCCGGCGACATGTCCAAGGCCG
GGTTCAACATCAGGCTCCGCGGTGCAAGCGGATCGAGTGGGTTGATGGAA
ATGGATGCCTGGGTGAATGCCATCCCCTCGCCGGGGCCGATGCGATTCCA
TCTCTCATGGCCCGAGGGCGGTATCGCCGAGACCAGCTTCGCTGTGCCCA
CCGGAGACATCATCAGCGCCTCTGAAACCGCAACCCAGCTCTGGCCAGAC
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99356:31..483+

>mRNA_M-pyrifera_M_contig99356.22857.1 ID=mRNA_M-pyrifera_M_contig99356.22857.1|Name=mRNA_M-pyrifera_M_contig99356.22857.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig99356:31..483+ (Macrocystis pyrifera P11B4 male)
ATGGCTCTGCTGGTTGCCGAGCAGCATGCGGTCGCTGCCGACTCGTTTCG
AGTGCACCGAGACGGCTTCTATCTGCACATGCGGATCGTCAGCCGCAACC
CAACCACCGACCACAGCAACCAACTTTTTGGCTCGGTCGTCGGAGACGGC
ACCCACCAAGCCGCTCAACTGCGTTGGGGCCTCGAGTTCAGCGACGGCCT
GCGAGCAGTTGCCGGCGACATGTCCAAGGCCGGGTTCAACATCAGGCTCC
GCGGTGCAAGCGGATCGAGTGGGTTGATGGAAATGGATGCCTGGGTGAAT
GCCATCCCCTCGCCGGGGCCGATGCGATTCCATCTCTCATGGCCCGAGGG
CGGTATCGCCGAGACCAGCTTCGCTGTGCCCACCGGAGACATCATCAGCG
CCTCTGAAACCGCAACCCAGCTCTGGCCAGACTGAATGGCTCTGCTGGTT
GCCGAGCAGCATGCGGTCGCTGCCGACTCGTTTCGAGTGCACCGAGACGG
CTTCTATCTGCACATGCGGATCGTCAGCCGCAACCCAACCACCGACCACA
GCAACCAACTTTTTGGCTCGGTCGTCGGAGACGGCACCCACCAAGCCGCT
CAACTGCGTTGGGGCCTCGAGTTCAGCGACGGCCTGCGAGCAGTTGCCGG
CGACATGTCCAAGGCCGGGTTCAACATCAGGCTCCGCGGTGCAAGCGGAT
CGAGTGGGTTGATGGAAATGGATGCCTGGGTGAATGCCATCCCCTCGCCG
GGGCCGATGCGATTCCATCTCTCATGGCCCGAGGGCGGTATCGCCGAGAC
CAGCTTCGCTGTGCCCACCGGAGACATCATCAGCGCCTCTGAAACCGCAA
CCCAGCTCTGGCCAGACTGA
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