mRNA_M-pyrifera_M_contig99327.22853.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99327.22853.1
Unique NamemRNA_M-pyrifera_M_contig99327.22853.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: D7G2I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I1_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.920e-22
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            LDGL RGVI   PV RKF+IVG +++KFT  R Q+PL+ G L SVYR+QG+T+PK++LDIR+P    +D AAVYVALS
Sbjct:  202 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALS 279          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.850e-22
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            LDGL RGVI   PV RKF+IVG +++KFT  R Q+PL+ G L SVYR+QG+T+PK++LDIR+P    +D AAVYVALS
Sbjct: 1909 LDGLQRGVIAVAPVERKFTIVGINKRKFTFKRRQIPLTAGCLSSVYRSQGQTMPKIILDIRRPPGHAVDCAAVYVALS 1986          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A6H5KXW4_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.120e-10
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKP 189
            L+GL RGV+   PV ++ +I G  + KF   R Q+PL  G + SV+R+QG+T+PK++LDI  P
Sbjct:  682 LEGLDRGVVAIAPVEKECTIEGIGKGKFIFKRRQLPLPAGCVSSVFRSQGQTMPKIILDIHPP 744          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A8H2X3J5_9AGAM (ATP-dependent DNA helicase n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2X3J5_9AGAM)

HSP 1 Score: 61.6 bits (148), Expect = 2.830e-9
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            ++GL  GV+   P+ RK+ I  K  +   + R Q+P++    F+ YRAQG+TI K+++DI +P  G +     YVALS
Sbjct: 1645 IEGLAPGVVPIFPMTRKYEISRKQGKPAQVTRRQLPITAAYAFTDYRAQGQTIKKVIVDIARPPSGGLTPFNAYVALS 1722          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A074S6X6_9AGAM (ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074S6X6_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 5.280e-9
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            + GL  GV+   P+ RK+ I  K  +   + R Q+P++    F+ YRAQG+TI K+++DI +P  G +     YVALS
Sbjct: 1425 IHGLGLGVVPVFPMTRKYDITRKQGKPAQVTRRQLPITAAYAFTDYRAQGQTIKKVIVDIARPPSGGLTPFNAYVALS 1502          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A167HPD4_CALVF (Uncharacterized protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167HPD4_CALVF)

HSP 1 Score: 57.8 bits (138), Expect = 2.200e-8
Identity = 29/78 (37.18%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            L GL  GVI      ++F I     + +T+ R QVP++     + YRAQG+T+P +++DI  P  G + +   YVALS
Sbjct:   60 LPGLDAGVIPIACTQKQFRITDSEGKTWTVTRNQVPITAAYAITDYRAQGQTLPYVIIDISTPPTGQITAFNAYVALS 137          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A4S4LRE4_9AGAM (ATP-dependent DNA helicase n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4LRE4_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 4.700e-8
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQK----FTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            LDGL   VI   P  + F+IV  S        T+ R Q+P++    F+ YRAQG+TIP +V+DI  P +G +    +YVALS
Sbjct: 1369 LDGLDERVIPIEPSQQTFTIVNPSLNPKPKILTVTRCQLPITAAYAFTDYRAQGQTIPYVVVDIAPPPNGTLSLFNLYVALS 1450          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A5N5QEX6_9AGAM (ATP-dependent DNA helicase n=1 Tax=Ceratobasidium theobromae TaxID=1582974 RepID=A0A5N5QEX6_9AGAM)

HSP 1 Score: 57.8 bits (138), Expect = 6.450e-8
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            ++GL +GVI   P    F I    +Q  +I R Q+PL     F+ YRAQG+T+P +++DI KP  G +     YVALS
Sbjct: 1818 IEGLEQGVIPIVPTCSSFRIPYNGKQ-ISIRREQIPLIPAYAFTDYRAQGQTLPYVIIDIGKPPTGGLTPFNAYVALS 1894          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A2R6S5T0_9APHY (ATP-dependent DNA helicase n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6S5T0_9APHY)

HSP 1 Score: 56.6 bits (135), Expect = 1.650e-7
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 1
Query:    1 LDGLPRGVIGCCP-------VYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVDGYMDSAAVYVALS 234
            L+GL  GV+   P       V++K  + GKSR   TI R Q P++    F+ YRAQG+TIP +V+DI  P  G +    +YVALS
Sbjct: 1793 LEGLEEGVVPVEPKQTTMRIVFKKGPLKGKSR---TIRRRQFPVTPAYAFTDYRAQGQTIPFVVVDIASPPYGKLSLFNLYVALS 1874          
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Match: A0A5E3XPP1_9AGAM (ATP-dependent DNA helicase n=4 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XPP1_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 2.010e-6
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 LDGLPRGVIGCCPVYRKFSIVGKSRQKF---TINRMQVPLSLGILFSVYRAQGETIPKLVLDIRKPVD-----GYMDSAAVYVALS 234
            L GLP GV+   P  R F I    R      T++R Q P++L   F+ YR+QG+TIP++++DI  P         +    VYVALS
Sbjct: 1817 LPGLPPGVVPFVPARRSFQISINGRHGTVHRTVHRSQFPMTLAYAFTDYRSQGQTIPRVIVDIATPPGPRTGLNKLSLFNVYVALS 1902          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99327.22853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2I1_ECTSI1.920e-2261.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3U9_ECTSI2.850e-2261.54ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KXW4_9PHAE3.120e-1046.03ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8H2X3J5_9AGAM2.830e-938.46ATP-dependent DNA helicase n=1 Tax=Rhizoctonia sol... [more]
A0A074S6X6_9AGAM5.280e-938.46ATP-dependent DNA helicase (Fragment) n=1 Tax=Rhiz... [more]
A0A167HPD4_CALVF2.200e-837.18Uncharacterized protein n=1 Tax=Calocera viscosa (... [more]
A0A4S4LRE4_9AGAM4.700e-841.46ATP-dependent DNA helicase n=1 Tax=Bondarzewia mes... [more]
A0A5N5QEX6_9AGAM6.450e-841.03ATP-dependent DNA helicase n=1 Tax=Ceratobasidium ... [more]
A0A2R6S5T0_9APHY1.650e-742.35ATP-dependent DNA helicase n=1 Tax=Hermanssonia ce... [more]
A0A5E3XPP1_9AGAM2.010e-638.37ATP-dependent DNA helicase n=4 Tax=Peniophora sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99327contigM-pyrifera_M_contig99327:24..257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue8e-19
Seed eggNOG ortholog2880.D7G3U9
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.8811712-CDS-M-pyrifera_M_contig99327:23..2571622816910.8811712-CDS-M-pyrifera_M_contig99327:23..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99327 24..257 -
1692278250.6354241-CDS-M-pyrifera_M_contig99327:23..2571692278250.6354241-CDS-M-pyrifera_M_contig99327:23..257Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99327 24..257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99327.22853.1prot_M-pyrifera_M_contig99327.22853.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99327 24..257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99327.22853.1

>prot_M-pyrifera_M_contig99327.22853.1 ID=prot_M-pyrifera_M_contig99327.22853.1|Name=mRNA_M-pyrifera_M_contig99327.22853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
LDGLPRGVIGCCPVYRKFSIVGKSRQKFTINRMQVPLSLGILFSVYRAQG
ETIPKLVLDIRKPVDGYMDSAAVYVALS
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mRNA from alignment at M-pyrifera_M_contig99327:24..257-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99327.22853.1 ID=mRNA_M-pyrifera_M_contig99327.22853.1|Name=mRNA_M-pyrifera_M_contig99327.22853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig99327:24..257- (Macrocystis pyrifera P11B4 male)
CTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTACAGGAA GTTCTCTATCGTTGGTAAAAGCAGGCAGAAATTCACCATCAACAGAATGC AGGTGCCTCTGTCTCTTGGTATTCTTTTCTCAGTCTATCGAGCACAAGGC GAAACCATCCCTAAACTTGTGCTCGACATTCGTAAGCCAGTAGACGGCTA TATGGACAGCGCGGCTGTCTACGTCGCTCTGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99327:24..257-

>mRNA_M-pyrifera_M_contig99327.22853.1 ID=mRNA_M-pyrifera_M_contig99327.22853.1|Name=mRNA_M-pyrifera_M_contig99327.22853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig99327:24..257- (Macrocystis pyrifera P11B4 male)
CTGGACGGGCTCCCTCGAGGTGTCATCGGCTGCTGTCCGGTTTACAGGAA
GTTCTCTATCGTTGGTAAAAGCAGGCAGAAATTCACCATCAACAGAATGC
AGGTGCCTCTGTCTCTTGGTATTCTTTTCTCAGTCTATCGAGCACAAGGC
GAAACCATCCCTAAACTTGTGCTCGACATTCGTAAGCCAGTAGACGGCTA
TATGGACAGCGCGGCTGTCTACGTCGCTCTGTCCCTGGACGGGCTCCCTC
GAGGTGTCATCGGCTGCTGTCCGGTTTACAGGAAGTTCTCTATCGTTGGT
AAAAGCAGGCAGAAATTCACCATCAACAGAATGCAGGTGCCTCTGTCTCT
TGGTATTCTTTTCTCAGTCTATCGAGCACAAGGCGAAACCATCCCTAAAC
TTGTGCTCGACATTCGTAAGCCAGTAGACGGCTATATGGACAGCGCGGCT
GTCTACGTCGCTCTGTCC
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