mRNA_M-pyrifera_M_contig99324.22852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99324.22852.1
Unique NamemRNA_M-pyrifera_M_contig99324.22852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: D8LMD2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD2_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.050e-21
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSSQTDGGNSTAVFFPGGDYEQRIPGVGKLT 189
            + N VY YPD WVCLY  YGCD  E EE+CM S+  T  GN++AVF+PGG+YEQ IPGVG LT
Sbjct:   50 VSNTVYEYPDIWVCLYGEYGCDSWELEEECMESAQLTGWGNTSAVFYPGGEYEQTIPGVGMLT 112
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: D8LT44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT44_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.560e-21
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSSQTDGGNSTAVFFPGGDYEQRIPGVGKLTK 192
            + N +Y YPD WVCLY  YGCDEME +E+C+ SS+ T+GG + AVF+PGG+YEQ IPG   L+K
Sbjct:   50 LSNNIYQYPDLWVCLYVNYGCDEMELQEECVNSSNATEGGETLAVFYPGGEYEQVIPGEQILSK 113
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: A0A6H5JN97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN97_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.440e-17
Identity = 36/65 (55.38%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSS--QTDGGNSTAVFFPGGDYEQRIPGVGKLT 189
            + N V+ YPD WVCLY  YGCDE+E EE+CM S++   T  GNS+AV++PGG+YEQ I   G+ T
Sbjct:   50 LSNTVFEYPDIWVCLYADYGCDELELEEECMTSATANMTGWGNSSAVYYPGGEYEQEIHVEGRET 114
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: D8LMD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMD1_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.370e-16
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSS--QTDGGNSTAVFFPGGDYEQRIPGVGKLT 189
            + N V+ YPD WVCLY  YGCDE E E +CM S++  +T  GNS+AV++PGG YEQ I   GKLT
Sbjct:  122 LSNTVFEYPDIWVCLYVAYGCDEWELENECMTSATGNRTGWGNSSAVYYPGGVYEQEIHVEGKLT 186
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: D7FU23_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU23_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 2.500e-16
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSSQTDGGNSTAVFFPGGDYEQRIPGVGKLT 189
            + N VY YPDT+VCLYN +GCD+M  EE C  S   T+GG+STAVF PGGD EQ I     LT
Sbjct:   50 LSNNVYRYPDTYVCLYNFFGCDDMALEEFCASSVFDTEGGSSTAVFNPGGDLEQEIATTAYLT 112
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: A0A6H5K474_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K474_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.760e-15
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSS--QTDGGNSTAVFFPGGDYEQRIPGVGKLT 189
            + N V+ YPD WVCLY  YGCDE E EE+CM S++  +T  G+S+AV++PGG YEQ I    KLT
Sbjct:   90 LSNTVFEYPDVWVCLYVDYGCDEWELEEECMTSATANRTGWGHSSAVYYPGGVYEQEIHVEEKLT 154
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BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Match: D8LNQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ1_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSSQTDGGNSTAVFFP 144
            + N+VY  PD W+CLYN YGCDE E EE+C+ S+  T+GG   AVF+P
Sbjct:   50 LTNEVYKNPDLWICLYNNYGCDEWELEEECVDSAWMTEGGEPDAVFYP 97
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99324.22852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMD2_ECTSI1.050e-2163.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LT44_ECTSI2.560e-2159.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN97_9PHAE9.440e-1755.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD1_ECTSI2.370e-1656.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FU23_ECTSI2.500e-1658.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K474_9PHAE2.760e-1555.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ1_ECTSI2.410e-1256.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99324contigM-pyrifera_M_contig99324:274..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.8511024-CDS-M-pyrifera_M_contig99324:273..4891622816910.8511024-CDS-M-pyrifera_M_contig99324:273..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99324 274..489 -
1692278250.6250246-CDS-M-pyrifera_M_contig99324:273..4891692278250.6250246-CDS-M-pyrifera_M_contig99324:273..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99324 274..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99324.22852.1prot_M-pyrifera_M_contig99324.22852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99324 274..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99324.22852.1

>prot_M-pyrifera_M_contig99324.22852.1 ID=prot_M-pyrifera_M_contig99324.22852.1|Name=mRNA_M-pyrifera_M_contig99324.22852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MQNKVYSYPDTWVCLYNTYGCDEMEREEQCMRSSSQTDGGNSTAVFFPGG
DYEQRIPGVGKLTKSVRTTLT*
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mRNA from alignment at M-pyrifera_M_contig99324:274..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99324.22852.1 ID=mRNA_M-pyrifera_M_contig99324.22852.1|Name=mRNA_M-pyrifera_M_contig99324.22852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig99324:274..489- (Macrocystis pyrifera P11B4 male)
ATGCAGAACAAGGTATACTCGTACCCAGACACGTGGGTGTGCCTTTACAA
CACGTATGGCTGCGACGAGATGGAGCGCGAAGAACAGTGTATGAGGTCCT
CATCGCAGACAGACGGAGGGAACTCAACTGCAGTGTTCTTCCCTGGCGGG
GACTACGAGCAGAGAATCCCTGGCGTTGGCAAGTTGACAAAATCGGTGAG
AACGACTTTGACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99324:274..489-

>mRNA_M-pyrifera_M_contig99324.22852.1 ID=mRNA_M-pyrifera_M_contig99324.22852.1|Name=mRNA_M-pyrifera_M_contig99324.22852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig99324:274..489- (Macrocystis pyrifera P11B4 male)
ATGCAGAACAAGGTATACTCGTACCCAGACACGTGGGTGTGCCTTTACAA
CACGTATGGCTGCGACGAGATGGAGCGCGAAGAACAGTGTATGAGGTCCT
CATCGCAGACAGACGGAGGGAACTCAACTGCAGTGTTCTTCCCTGGCGGG
GACTACGAGCAGAGAATCCCTGGCGTTGGCAAGTTGACAAAATCGGTGAG
AACGACTTTGACCTGAATGCAGAACAAGGTATACTCGTACCCAGACACGT
GGGTGTGCCTTTACAACACGTATGGCTGCGACGAGATGGAGCGCGAAGAA
CAGTGTATGAGGTCCTCATCGCAGACAGACGGAGGGAACTCAACTGCAGT
GTTCTTCCCTGGCGGGGACTACGAGCAGAGAATCCCTGGCGTTGGCAAGT
TGACAAAATCGGTGAGAACGACTTTGACCTGA
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