mRNA_M-pyrifera_M_contig9932.22851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9932.22851.1
Unique NamemRNA_M-pyrifera_M_contig9932.22851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: D8LR28_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR28_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.420e-41
Identity = 71/87 (81.61%), Postives = 82/87 (94.25%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDR 262
            +ALMLAVPRPLQLERILP+VASLGVTT+VLCQA+KVPKFYFGSH FRDP S+REKLIEGLSQ GDT++P++ VARRL +FL+DDLDR
Sbjct:  200 VALMLAVPRPLQLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPPSVREKLIEGLSQSGDTVMPEVMVARRLKIFLEDDLDR 286
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A6H5KW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW92_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.600e-34
Identity = 68/106 (64.15%), Postives = 79/106 (74.53%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTI-------------------LPDIRVARRLTVFLDDDLDR 262
            +ALMLAVPRPL+LERILP+VASLGVTT+VLCQA+KVPKFYFGSH FRDP S+R KLIEGLSQ  D +                   LP++ VARRL +FL+DDLDR
Sbjct:  112 VALMLAVPRPLKLERILPVVASLGVTTIVLCQAKKVPKFYFGSHFFRDPLSVRAKLIEGLSQVSDEVRVFRQVKHFDNMENRAAFVLPEVIVARRLNIFLEDDLDR 217
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A7S2KRF7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KRF7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.080e-26
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            ++L+LA+PRPLQL RILP+V+ LGV  L+L  A KVPK YFGSH+FR P  +R  L+EGL+Q GD  LP++ V +RL VF++D+LD L
Sbjct:   40 VSLLLALPRPLQLSRILPMVSQLGVDQLILTNAMKVPKDYFGSHIFRKPEVLRGLLMEGLAQSGDVRLPNVHVTKRLKVFVEDELDVL 127
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A1Z5JKH5_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKH5_FISSO)

HSP 1 Score: 106 bits (264), Expect = 6.900e-26
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            ++L+LA+PRPLQL R+LP+++ +GV  LVL +ARKVPK YFGSHLFR P  + E+LIEGL Q GDT LP + V + L+ F+DD LD L
Sbjct:  124 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPQVTVVKNLSQFMDDTLDEL 211
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A6V2MGD3_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2MGD3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 7.680e-26
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            ++L+LA+PRPLQL RILP+VA LGV  LVL  A+KVPK YFGSHLFR P+ +R  LIEGL Q GD  +P + V RRL  FL+DDLD +
Sbjct:  250 VSLILALPRPLQLGRILPMVAQLGVDHLVLTSAQKVPKDYFGSHLFRKPNELRRHLIEGLCQAGDVKIPKVTVVRRLKPFLEDDLDSM 337
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A7S1FT39_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT39_9STRA)

HSP 1 Score: 105 bits (262), Expect = 8.020e-26
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLD 259
            ++L+LA PRPL L RILP+V+ +GV  LVLC A KVPK YFGSHLFR    + + L+EGL Q GD  LP++ VARRL +FL+DDLD
Sbjct:   71 VSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLD 156
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A7S1BIA7_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIA7_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.260e-25
Identity = 52/86 (60.47%), Postives = 65/86 (75.58%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLD 259
            ++L+LA PRPL L RILP+V+ +GV  LVLC A KVPK YFGSHLFR    + + L+EGL Q GD  LP++ VARRL +FL+DDLD
Sbjct:  180 VSLILACPRPLALRRILPVVSMMGVDRLVLCGASKVPKDYFGSHLFRKEEEITKLLVEGLCQAGDVRLPEVTVARRLKIFLEDDLD 265
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BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: B7FST2_PHATC (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST2_PHATC)

HSP 1 Score: 102 bits (255), Expect = 2.140e-24
Identity = 49/88 (55.68%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            ++L+LA+PRPLQL R+LP+++ +GV  LVL QA+KVPK YFGSHL R+P  +REKLIEGL Q GD  LP + + R L  FL +++D +
Sbjct:  152 VSLILALPRPLQLGRMLPMISQMGVNHLVLAQAQKVPKDYFGSHLLRNPEELREKLIEGLCQAGDVRLPQLHIVRNLRDFLTNEVDEI 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A835YRY5_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRY5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.880e-24
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 2 
Query:    8 LMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            L+LA PRPLQLER+LP+++SLGV +LVL  A KV K YFGSHL R P ++R KL+EG +Q G T+LP   + RRL +FL+D+L+ L
Sbjct:  221 LLLAAPRPLQLERMLPMISSLGVDSLVLINAAKVEKSYFGSHLMRKPEALRAKLVEGCTQSGSTVLPRTTIKRRLKIFLEDELESL 306
[Close]
BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Match: A0A1Z5K163_FISSO (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K163_FISSO)

HSP 1 Score: 102 bits (253), Expect = 4.010e-24
Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 2 
Query:    2 IALMLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMREKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL 265
            ++L+LA+PRPLQL R+LP+++ +GV  LVL +ARKVPK YFGSHLFR P  + E+LIEGL Q GDT LP + + + L+ FLD  +D L
Sbjct:  146 VSLILALPRPLQLGRMLPMISQMGVDHLVLTEARKVPKDYFGSHLFRKPELLTERLIEGLCQSGDTKLPKVTIVKSLSQFLDGKVDEL 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9932.22851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR28_ECTSI5.420e-4181.6116S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6H5KW92_9PHAE6.600e-3464.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2KRF7_9STRA6.080e-2657.9516S rRNA (uracil(1498)-N(3))-methyltransferase (Fr... [more]
A0A1Z5JKH5_FISSO6.900e-2659.0916S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A6V2MGD3_9STRA7.680e-2662.5016S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A7S1FT39_9STRA8.020e-2660.4716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A7S1BIA7_9STRA4.260e-2560.4716S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
B7FST2_PHATC2.140e-2455.6816S rRNA (uracil(1498)-N(3))-methyltransferase n=2... [more]
A0A835YRY5_9STRA2.880e-2458.1416S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]
A0A1Z5K163_FISSO4.010e-2456.8216S rRNA (uracil(1498)-N(3))-methyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9932contigM-pyrifera_M_contig9932:7622..9509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue8.1e-33
Seed eggNOG ortholog2880.D8LR28
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.RNA methyltransferase
EggNOG OGs2S21E@2759,COG1385@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size265
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9932.22851.1prot_M-pyrifera_M_contig9932.22851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9932 7632..9509 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.7842906-UTR-M-pyrifera_M_contig9932:7621..76311622816910.7842906-UTR-M-pyrifera_M_contig9932:7621..7631Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9932 7622..7631 +
1692278250.579992-UTR-M-pyrifera_M_contig9932:7621..76311692278250.579992-UTR-M-pyrifera_M_contig9932:7621..7631Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9932 7622..7631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.7950573-CDS-M-pyrifera_M_contig9932:7631..77271622816910.7950573-CDS-M-pyrifera_M_contig9932:7631..7727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 7632..7727 +
1692278250.5964322-CDS-M-pyrifera_M_contig9932:7631..77271692278250.5964322-CDS-M-pyrifera_M_contig9932:7631..7727Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 7632..7727 +
1622816910.807891-CDS-M-pyrifera_M_contig9932:8559..86401622816910.807891-CDS-M-pyrifera_M_contig9932:8559..8640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 8560..8640 +
1692278250.607769-CDS-M-pyrifera_M_contig9932:8559..86401692278250.607769-CDS-M-pyrifera_M_contig9932:8559..8640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 8560..8640 +
1622816910.8202155-CDS-M-pyrifera_M_contig9932:9431..95091622816910.8202155-CDS-M-pyrifera_M_contig9932:9431..9509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 9432..9509 +
1692278250.6163034-CDS-M-pyrifera_M_contig9932:9431..95091692278250.6163034-CDS-M-pyrifera_M_contig9932:9431..9509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9932 9432..9509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9932.22851.1

>prot_M-pyrifera_M_contig9932.22851.1 ID=prot_M-pyrifera_M_contig9932.22851.1|Name=mRNA_M-pyrifera_M_contig9932.22851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MLAVPRPLQLERILPIVASLGVTTLVLCQARKVPKFYFGSHLFRDPSSMR
EKLIEGLSQCGDTILPDIRVARRLTVFLDDDLDRL
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mRNA from alignment at M-pyrifera_M_contig9932:7622..9509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9932.22851.1 ID=mRNA_M-pyrifera_M_contig9932.22851.1|Name=mRNA_M-pyrifera_M_contig9932.22851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1888bp|location=Sequence derived from alignment at M-pyrifera_M_contig9932:7622..9509+ (Macrocystis pyrifera P11B4 male)
GATCGCGCTCATGCTGGCCGTCCCGCGGCCTTTGCAGCTGGAGCGCATCT
TGCCGATAGTTGCAAGCTTAGGGGTGACCACGCTTGTGCTGTGCCAGGCT
CGGAAGGTGAGCAGCAAGAAGTTTTCAATACAGTATAGAGGCAGGAGGTC
GCTGAGCGTGAAAAAGGAAAATGTTCCTACGAGCTCAAAAGCGAAAGTAA
TCCTTGTGTGACCAAAAAAGCAATCTACGAGTATTCGAGCCGTACCTAGT
GCCTGCAAGCGAAAAGCTGACAAAATCGATAAAAAAAACGTAAACATCAG
GGATTGAACTCTTAGCCTACATTTTAGAGGACTGGAAGCCCCGCAACACT
TCCTGTGCGAAACGCTTGATCGAACCTCCGTGAGTGCGGGCGCATGGCAG
CACAGGGGTGCAAGCACCCGTGGGAGTTCCTATTACAGTCGCCTATTTTT
GGGTCCGTCATACGGACGAGTACGTATAGAGGATAAGCGTGCTGCATATT
CCCCCGAGGTACGGCGGCACCCGAATATTTTATAACATTACGTATGTTTT
GCTGGTACGTAAGACGGACCGCAGAGTATGTCGCTGTATGGTTTATGTCG
CGCTCGCTGGCCTAACGTGAAGCTTGGAAGCGGTAGCAGCGGCGGCGGTA
GCGGTGGCAGCGCGCTCTTTTGGCGCAATATGCGCGTCGACGGTGAAACA
ACTACGCTCCTTTTTACTTTTCTACCCCGCACCTTCGGCTGCAGTTGCTT
TTTGCTTGTGTGCACACCATTCGAGCCAACATTTTGTATTAAGTCGCTCG
CTGTGGACGTTCTGATGTGCGTCTTTGAAAACCAGTACAAAGCCTTAACC
CTCGAACGTATATATATATATATATCATGTCACATTTTACTGCTGTGCGT
TTTTGGGACCGAATAACGCGATGATTATGGCGTCGCAGGTGCCGAAATTT
TACTTCGGGTCGCACCTGTTCCGCGACCCGTCTAGCATGAGGGAGAAGCT
TATCGAGGGGTTGTCGCAGGTGCGCGCGGGGGTGCGTGGGATTTATGCTG
CGTTAGGGTACTCATATCATGCATGGCCGTAGTCGTAGGACCATAGATCC
TCGCATCCCTACAATGCCGGGACGGGGGATGTCGGGTTTTTGCCGACCAC
GAATGAGGGGCGGGGGGAAGGCGTACTCGTTGTCATGTCATGCATGGCCG
TAGTCGTATGACCATATTGGGGGCTCGCGGGGGGGTTGCTCGTGCGGTTT
TTGCTATTTTTTTCGCCATTTTTCGCATTGCTTACTCGTTTTGTTCGTGT
TTGGTGATCGGGTTTGATATCGAGGGATTCCGTCGACACCGTTTGGGTCT
GCAGCGACGTTTTTCTTGTTCTTCCCGCGCTGCGCTTGTCTCTCTCTGGA
GTGGGCACGATTATGTATGCAGAGTTTCGGATGATGACACGCGGGAAAGG
CTGAAATAATCAGCAGTACGTATGCCGAAATGAAATAGAAGCCAACAATG
AAGTCAACAGTTGGGATACAATCTCAGGCTGATGTACCAATGCATGCGCC
ACACGGTACGACATTGGTTACCTGGTAGTAATTACCCCAGCCTTATCTCT
CTGGCGGAAAGCTCGAGACAACGGGGATCACGTTTGCGTACGGTTACCAC
GCCGACGCAAATCACGCTCGCGCATGATCACTTCAAGAGCATCCTATTTT
CTTTTGCATCCTGCTTTGCCCCTTTTCCTCCCCCTTCTCATGCACGACTG
CCCGCCCTTGCGTCCGATCGCCGCCCCCTATGTTGCACTGATGACGCGCG
CTGTTCGAAGTGCGGAGACACCATTCTCCCTGATATTAGAGTAGCTCGTC
GCCTTACGGTGTTCCTGGACGACGACCTAGACAGGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9932:7622..9509+

>mRNA_M-pyrifera_M_contig9932.22851.1 ID=mRNA_M-pyrifera_M_contig9932.22851.1|Name=mRNA_M-pyrifera_M_contig9932.22851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig9932:7622..9509+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCGTCCCGCGGCCTTTGCAGCTGGAGCGCATCTTGCCGATAGT
TGCAAGCTTAGGGGTGACCACGCTTGTGCTGTGCCAGGCTCGGAAGATGC
TGGCCGTCCCGCGGCCTTTGCAGCTGGAGCGCATCTTGCCGATAGTTGCA
AGCTTAGGGGTGACCACGCTTGTGCTGTGCCAGGCTCGGAAGGTGCCGAA
ATTTTACTTCGGGTCGCACCTGTTCCGCGACCCGTCTAGCATGAGGGAGA
AGCTTATCGAGGGGTTGTCGCAGGTGCCGAAATTTTACTTCGGGTCGCAC
CTGTTCCGCGACCCGTCTAGCATGAGGGAGAAGCTTATCGAGGGGTTGTC
GCAGTGCGGAGACACCATTCTCCCTGATATTAGAGTAGCTCGTCGCCTTA
CGGTGTTCCTGGACGACGACCTAGACAGGCTTTGCGGAGACACCATTCTC
CCTGATATTAGAGTAGCTCGTCGCCTTACGGTGTTCCTGGACGACGACCT
AGACAGGCTT
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