mRNA_M-pyrifera_M_contig99312.22849.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99312.22849.1
Unique NamemRNA_M-pyrifera_M_contig99312.22849.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A5A8CHZ5_CAFRO (EGF-like domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CHZ5_CAFRO)

HSP 1 Score: 176 bits (447), Expect = 2.720e-51
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPITTGSRWAGNET 402
            AH Y ECSG+G CDR TGEC C +G TG+ACQR+ECPN+CSG GVCRTL EIAA  LNKR + ++ G   Y GV  SF+YNLWD D   ACICD GYTG DCS+R+C R DDP+T+ +RW G+ET
Sbjct:  101 AHYYAECSGKGQCDRTTGECGCFEGFTGNACQRAECPNRCSGHGVCRTLREIAANKLNKRIVRNEMGVRFYEGVEASFEYNLWDADKAQACICDAGYTGFDCSLRDCLRNDDPLTSTARWHGSET 225          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A7S1CG67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG67_9STRA)

HSP 1 Score: 156 bits (394), Expect = 8.430e-43
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   40 VECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNI--GSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPITTGSRWAGNET 402
            VECS +G CD  TG C+C DG TGS+CQR+ CPN CSG GVCRT  EIAAG +N   I   + H R+D  GV  +F YNLWD D   AC+CDPGYTGPDCS+RECPRGDDP++  ++  G  T
Sbjct:  236 VECSYRGLCDYETGLCMCFDGYTGSSCQRTVCPNDCSGHGVCRTTGEIAAGAMNTHVIRRDADHSRVD--GVETAFTYNLWDSDKNQACVCDPGYTGPDCSLRECPRGDDPLSALAKDCGGAT 356          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A813AFR8_9DINO (TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AFR8_9DINO)

HSP 1 Score: 133 bits (335), Expect = 1.380e-36
Identity = 67/124 (54.03%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 MWPFTQNGAAHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAG-TLNKRNIGSQHGRI----DY-------NGVTESFDYNLWDKDVFTACICDPGYTGPDCS 336
            +W  T+   AH Y ECS +G CDR  G+C C DG TGSACQR+ CPN CSG G C TL EIAAG  + K + GS  GR     DY       +GV+E+FDYNLWD D   AC+CD GY GPDC+
Sbjct:   96 LWQGTEAQEAHFYAECSNKGFCDRALGQCACFDGYTGSACQRTTCPNDCSGHGQCYTLREIAAGPNVEKTHDGSAVGRNFRIEDYQYGTYMTSGVSEAFDYNLWDADKNQACVCDAGYFGPDCA 219          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A5A8DCY8_CAFRO (EGF-like domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DCY8_CAFRO)

HSP 1 Score: 137 bits (345), Expect = 1.140e-35
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTL----------NKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPITTGSRWAGNE 399
            AH Y ECSG+G+CDR TG+C C++G +G+ C R+ CPN CSG G+C T  EIA G+           N R +        Y GV + F YN WD    T C+CDPG TGPDCSMR CP G DP+   S   GN+
Sbjct:  144 AHFYAECSGRGTCDRSTGQCNCYEGFSGTGCARTACPNDCSGAGICMTAQEIATGSRVAGSSNTRGRNYRALSHFASYTTYEGVRDRFTYNHWDAHKSTQCVCDPGRTGPDCSMRVCPFGRDPLVRDSALCGNK 277          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A813CVX2_9DINO (TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CVX2_9DINO)

HSP 1 Score: 137 bits (345), Expect = 6.230e-35
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTL----------NKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPITTGSRWAGNE 399
            AH Y ECSG+G+CDR TG+C C++G +G+ C R+ CPN CSG G+C T  EIA G+           N R +        Y GV + F YN WD    T C+CDPG TGPDCSMR CP G DP+   S   GN+
Sbjct:  829 AHFYAECSGRGTCDRSTGQCNCYEGFSGTGCARTACPNDCSGAGICMTAQEIATGSRVAGSSNTRGRNYRALSHFASYTTYEGVRDRFTYNHWDAHKSTQCVCDPGRTGPDCSMRVCPFGRDPLVRDSALCGNK 962          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A3F2RLT4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLT4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.950e-34
Identity = 61/130 (46.92%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    7 PFTQ--------NGAAHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPIT 372
            PFT+        N  AH Y EC  +G+CDR TGEC+C  G  GS C+R +CPN CSG G C  + EIA+ T +KR +G   GR           Y LWD++    C+CD  Y G DCS+R CPRGDDP+T
Sbjct:   54 PFTRAWQDTAQRNDDAHYYAECGNRGTCDRTTGECLCDAGFVGSGCRRMQCPNDCSGHGTCEFIEEIASNTYSKR-VGGVSGRT----------YTLWDQEKIMGCVCDANYEGHDCSLRTCPRGDDPLT 172          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A2R5GQK6_9STRA (Tenascin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQK6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.410e-33
Identity = 63/130 (48.46%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 MWPFTQNGAA----HAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPITTG 378
             WP   N A     H Y+ECS QG CDR TGEC C +G TG+ C+RS CPN C+G GVC+T+S+             Q G         S++YNLWDKD+  +C+CD GY+GPDCS R+C  GDDP+T G
Sbjct:  110 QWPAFSNAAGVDEGHFYMECSNQGICDRSTGECECFEGYTGAGCRRSSCPNDCNGHGVCQTVSQ-------------QKG---------SYNYNLWDKDMSRSCVCDAGYSGPDCSERKCGYGDDPLTVG 217          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: D0NBD7_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NBD7_PHYIT)

HSP 1 Score: 124 bits (312), Expect = 4.590e-32
Identity = 57/115 (49.57%), Postives = 69/115 (60.00%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPIT 372
            AH + EC  +G+CDR TGEC C  G  GS C+R +CPN CSG G C  + E+A  T +KR IG   GR           Y LWD++    C+CD  Y G DCSMR CPRGDDP+T
Sbjct:   72 AHYHAECGSRGTCDRATGECTCDAGFIGSGCRRMQCPNDCSGHGTCEFIEELATDTAHKR-IGGVAGR----------KYTLWDQEKIMGCVCDANYEGHDCSMRSCPRGDDPLT 175          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A8J5IY64_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IY64_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.190e-31
Identity = 57/115 (49.57%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPIT 372
            AH Y EC  +G+CDR TGEC C  G  GS C+R +CPN CSG G C  + E+AA T NKR            G   S  Y LWD++    C+CD  Y G DCSMR CP+GDDP+T
Sbjct:  218 AHYYAECGNRGTCDRATGECTCDAGFIGSGCRRMQCPNDCSGHGTCEFIEELAADTFNKR-----------VGGVASRKYTLWDQEKIMGCVCDANYEGHDCSMRSCPKGDDPLT 321          
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Match: A0A329SFN3_9STRA (EGF-like domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SFN3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.200e-31
Identity = 56/115 (48.70%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   28 AHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCSGRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTACICDPGYTGPDCSMRECPRGDDPIT 372
            AH Y EC  +G+CDR TGEC C  G  GS C+R +CPN CSG G C  + E+AA T +KR            G   S  Y LWD++    C+CD  Y G DCSMR CP+GDDP+T
Sbjct:   72 AHYYAECGNRGTCDRATGECTCDAGFIGSGCRRMQCPNDCSGHGTCEFIEELAADTFHKR-----------VGGVASRKYTLWDQEKIMGCVCDANYEGHDCSMRSCPKGDDPLT 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99312.22849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CHZ5_CAFRO2.720e-5164.00EGF-like domain-containing protein n=4 Tax=Sar Tax... [more]
A0A7S1CG67_9STRA8.430e-4359.35Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A813AFR8_9DINO1.380e-3654.03TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
A0A5A8DCY8_CAFRO1.140e-3547.76EGF-like domain-containing protein n=2 Tax=Cafeter... [more]
A0A813CVX2_9DINO6.230e-3547.76TNC protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230... [more]
A0A3F2RLT4_9STRA8.950e-3446.92Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A2R5GQK6_9STRA2.410e-3348.46Tenascin n=1 Tax=Hondaea fermentalgiana TaxID=2315... [more]
D0NBD7_PHYIT4.590e-3249.57Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A8J5IY64_9STRA1.190e-3149.57Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A329SFN3_9STRA1.200e-3148.70EGF-like domain-containing protein n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99312contigM-pyrifera_M_contig99312:35..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue6.2e-27
Seed eggNOG ortholog2880.D7G350
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.7122827-CDS-M-pyrifera_M_contig99312:34..4361622816910.7122827-CDS-M-pyrifera_M_contig99312:34..436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99312 35..436 +
1692278250.5452025-CDS-M-pyrifera_M_contig99312:34..4361692278250.5452025-CDS-M-pyrifera_M_contig99312:34..436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99312 35..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99312.22849.1prot_M-pyrifera_M_contig99312.22849.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99312 35..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99312.22849.1

>prot_M-pyrifera_M_contig99312.22849.1 ID=prot_M-pyrifera_M_contig99312.22849.1|Name=mRNA_M-pyrifera_M_contig99312.22849.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MWPFTQNGAAHAYVECSGQGSCDRRTGECVCHDGTTGSACQRSECPNQCS
GRGVCRTLSEIAAGTLNKRNIGSQHGRIDYNGVTESFDYNLWDKDVFTAC
ICDPGYTGPDCSMRECPRGDDPITTGSRWAGNET
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mRNA from alignment at M-pyrifera_M_contig99312:35..436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99312.22849.1 ID=mRNA_M-pyrifera_M_contig99312.22849.1|Name=mRNA_M-pyrifera_M_contig99312.22849.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig99312:35..436+ (Macrocystis pyrifera P11B4 male)
ATGTGGCCCTTCACTCAAAATGGAGCGGCACATGCATACGTGGAATGCAG TGGACAAGGATCATGTGATCGCCGCACAGGGGAGTGTGTGTGTCACGATG GAACTACTGGCAGTGCTTGCCAACGTTCTGAATGCCCCAACCAATGCAGT GGACGCGGTGTGTGCCGTACTTTGTCCGAAATTGCAGCTGGAACTCTCAA CAAGCGCAACATTGGGTCTCAACATGGCCGCATTGACTACAACGGTGTGA CCGAATCCTTTGATTACAACTTGTGGGACAAGGATGTGTTCACTGCGTGT ATCTGTGACCCTGGATACACTGGTCCTGATTGCAGCATGCGTGAATGCCC ACGTGGTGACGATCCAATCACCACCGGCTCACGCTGGGCTGGCAACGAAA CC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99312:35..436+

>mRNA_M-pyrifera_M_contig99312.22849.1 ID=mRNA_M-pyrifera_M_contig99312.22849.1|Name=mRNA_M-pyrifera_M_contig99312.22849.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig99312:35..436+ (Macrocystis pyrifera P11B4 male)
ATGTGGCCCTTCACTCAAAATGGAGCGGCACATGCATACGTGGAATGCAG
TGGACAAGGATCATGTGATCGCCGCACAGGGGAGTGTGTGTGTCACGATG
GAACTACTGGCAGTGCTTGCCAACGTTCTGAATGCCCCAACCAATGCAGT
GGACGCGGTGTGTGCCGTACTTTGTCCGAAATTGCAGCTGGAACTCTCAA
CAAGCGCAACATTGGGTCTCAACATGGCCGCATTGACTACAACGGTGTGA
CCGAATCCTTTGATTACAACTTGTGGGACAAGGATGTGTTCACTGCGTGT
ATCTGTGACCCTGGATACACTGGTCCTGATTGCAGCATGCGTGAATGCCC
ACGTGGTGACGATCCAATCACCACCGGCTCACGCTGGGCTGGCAACGAAA
CCATGTGGCCCTTCACTCAAAATGGAGCGGCACATGCATACGTGGAATGC
AGTGGACAAGGATCATGTGATCGCCGCACAGGGGAGTGTGTGTGTCACGA
TGGAACTACTGGCAGTGCTTGCCAACGTTCTGAATGCCCCAACCAATGCA
GTGGACGCGGTGTGTGCCGTACTTTGTCCGAAATTGCAGCTGGAACTCTC
AACAAGCGCAACATTGGGTCTCAACATGGCCGCATTGACTACAACGGTGT
GACCGAATCCTTTGATTACAACTTGTGGGACAAGGATGTGTTCACTGCGT
GTATCTGTGACCCTGGATACACTGGTCCTGATTGCAGCATGCGTGAATGC
CCACGTGGTGACGATCCAATCACCACCGGCTCACGCTGGGCTGGCAACGA
AACC
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