mRNA_M-pyrifera_M_contig99302.22847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99302.22847.1
Unique NamemRNA_M-pyrifera_M_contig99302.22847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: A0A656TCA9_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Streptomyces sp. NRRL S-444 TaxID=1609134 RepID=A0A656TCA9_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 6.960e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCL 123
            GH G V +VSFSADGL +ATGS D T+R+WD + G  R  L
Sbjct:    3 GHGGVVRSVSFSADGLTLATGSDDRTVRLWDAKNGALRTVL 43
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: A0A8H4RMU1_9HELO (Protein kinase domain-containing protein n=1 Tax=Cudoniella acicularis TaxID=354080 RepID=A0A8H4RMU1_9HELO)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-5
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCLRG 129
            GH G V AV+FS DG L+A+GS D T+R+WD  TG A+G L+G
Sbjct:  470 GHSGGVGAVAFSPDGKLIASGSRDETIRLWDAATGEAQGTLKG 512
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: A0A7C9MTY6_9ACTN (Uncharacterized protein n=2 Tax=Herbidospora solisilvae TaxID=2696284 RepID=A0A7C9MTY6_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 1.370e-5
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTG 105
            GH GRV +V+FS DG  +A+G GDGT+R+WD RTG
Sbjct:  169 GHTGRVSSVAFSPDGTRLASGGGDGTVRIWDARTG 203
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: A0A5N5WFR4_9EURO (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Aspergillus leporis TaxID=41062 RepID=A0A5N5WFR4_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 1.550e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCL 123
            GH  RV++V+FS DGL +A+GS DGT+++WD  TG  R  L
Sbjct:    8 GHSSRVYSVAFSLDGLTLASGSNDGTIKLWDTTTGTHRQTL 48
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: J3P4T9_GAET3 (NACHT_N domain-containing protein n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3P4T9_GAET3)

HSP 1 Score: 52.4 bits (124), Expect = 2.180e-5
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTG--LARG 117
            GHRG VH VS SADG LVA+ S DGT+ VWD +TG  L+RG
Sbjct: 1459 GHRGPVHCVSMSADGSLVASASTDGTICVWDGKTGENLSRG 1499
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: UPI001BE55662 (trypsin-like peptidase domain-containing protein n=1 Tax=Streptomyces sp. ISL-66 TaxID=2819186 RepID=UPI001BE55662)

HSP 1 Score: 50.8 bits (120), Expect = 7.450e-5
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCLR 126
            GH G V  V+FS DG  +ATGS DGT R+WD  TG  R  LR
Sbjct:  763 GHTGSVDGVAFSPDGGTLATGSADGTARLWDTATGTTRATLR 804
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BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: M2QWJ9_CERS8 (NACHT domain-containing protein n=1 Tax=Ceriporiopsis subvermispora (strain B) TaxID=914234 RepID=M2QWJ9_CERS8)

HSP 1 Score: 50.8 bits (120), Expect = 7.480e-5
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTG 105
            GH G +++V+FS DG  VA+GS DGT+R+WD RTG
Sbjct:  760 GHAGAIYSVAFSPDGTRVASGSHDGTVRIWDTRTG 794
[Close]
BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: A0A1L9Q4A1_ASPVE (NACHT domain-containing protein n=1 Tax=Aspergillus versicolor CBS 583.65 TaxID=1036611 RepID=A0A1L9Q4A1_ASPVE)

HSP 1 Score: 50.8 bits (120), Expect = 7.480e-5
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTG 105
            GH G V AV+FS DGL++A+GS DGT+R+WD  TG
Sbjct:  955 GHAGWVSAVAFSPDGLIIASGSRDGTIRLWDAATG 989
[Close]
BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Match: UPI001B85FC15 (WD40-repeat-containing domain protein n=1 Tax=Suillus discolor TaxID=1912936 RepID=UPI001B85FC15)

HSP 1 Score: 49.7 bits (117), Expect = 8.970e-5
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCL 123
            GH  RV +V+ SADG L+A+GS D T+RVWD  TG A G L
Sbjct:   16 GHTNRVWSVAISADGTLIASGSSDKTVRVWDADTGNALGTL 56
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99302.22847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A656TCA9_9ACTN6.960e-658.54Uncharacterized protein (Fragment) n=1 Tax=Strepto... [more]
A0A8H4RMU1_9HELO1.080e-558.14Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7C9MTY6_9ACTN1.370e-562.86Uncharacterized protein n=2 Tax=Herbidospora solis... [more]
A0A5N5WFR4_9EURO1.550e-553.66WD40-repeat-containing domain protein (Fragment) n... [more]
J3P4T9_GAET32.180e-565.85NACHT_N domain-containing protein n=1 Tax=Gaeumann... [more]
UPI001BE556627.450e-557.14trypsin-like peptidase domain-containing protein n... [more]
M2QWJ9_CERS87.480e-560.00NACHT domain-containing protein n=1 Tax=Ceriporiop... [more]
A0A1L9Q4A1_ASPVE7.480e-562.86NACHT domain-containing protein n=1 Tax=Aspergillu... [more]
UPI001B85FC158.970e-558.54WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99302contigM-pyrifera_M_contig99302:325..678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.6462395-CDS-M-pyrifera_M_contig99302:324..6781622816910.6462395-CDS-M-pyrifera_M_contig99302:324..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99302 325..678 -
1692278250.5187047-CDS-M-pyrifera_M_contig99302:324..6781692278250.5187047-CDS-M-pyrifera_M_contig99302:324..678Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99302 325..678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99302.22847.1prot_M-pyrifera_M_contig99302.22847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99302 325..678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99302.22847.1

>prot_M-pyrifera_M_contig99302.22847.1 ID=prot_M-pyrifera_M_contig99302.22847.1|Name=mRNA_M-pyrifera_M_contig99302.22847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
GHRGRVHAVSFSADGLLVATGSGDGTLRVWDRRTGLARGCLRGHGGGVLA
AAFHPFAPVLASGSEDRTVRVWQVGGVGGVDGGAVVLEAHAADVNAVRWR
PDGAVLASGGDDLHVCLW
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mRNA from alignment at M-pyrifera_M_contig99302:325..678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99302.22847.1 ID=mRNA_M-pyrifera_M_contig99302.22847.1|Name=mRNA_M-pyrifera_M_contig99302.22847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig99302:325..678- (Macrocystis pyrifera P11B4 male)
GGGCACCGTGGGCGTGTGCACGCGGTTTCTTTTTCTGCGGACGGGTTGCT
GGTGGCGACGGGGAGCGGGGACGGGACGCTTCGTGTGTGGGATCGCCGGA
CTGGTCTGGCGCGGGGCTGTCTGCGTGGCCACGGGGGCGGGGTGCTGGCG
GCGGCGTTCCACCCGTTCGCGCCCGTGTTGGCCAGCGGGTCGGAAGACCG
CACGGTTCGGGTGTGGCAGGTCGGCGGGGTTGGGGGCGTGGACGGTGGTG
CTGTGGTGCTGGAGGCACATGCTGCTGATGTGAACGCCGTGCGTTGGCGT
CCCGACGGTGCCGTGCTCGCTTCCGGCGGAGACGACCTGCACGTGTGTTT
GTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99302:325..678-

>mRNA_M-pyrifera_M_contig99302.22847.1 ID=mRNA_M-pyrifera_M_contig99302.22847.1|Name=mRNA_M-pyrifera_M_contig99302.22847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig99302:325..678- (Macrocystis pyrifera P11B4 male)
GGGCACCGTGGGCGTGTGCACGCGGTTTCTTTTTCTGCGGACGGGTTGCT
GGTGGCGACGGGGAGCGGGGACGGGACGCTTCGTGTGTGGGATCGCCGGA
CTGGTCTGGCGCGGGGCTGTCTGCGTGGCCACGGGGGCGGGGTGCTGGCG
GCGGCGTTCCACCCGTTCGCGCCCGTGTTGGCCAGCGGGTCGGAAGACCG
CACGGTTCGGGTGTGGCAGGTCGGCGGGGTTGGGGGCGTGGACGGTGGTG
CTGTGGTGCTGGAGGCACATGCTGCTGATGTGAACGCCGTGCGTTGGCGT
CCCGACGGTGCCGTGCTCGCTTCCGGCGGAGACGACCTGCACGTGTGTTT
GTGGGGGCACCGTGGGCGTGTGCACGCGGTTTCTTTTTCTGCGGACGGGT
TGCTGGTGGCGACGGGGAGCGGGGACGGGACGCTTCGTGTGTGGGATCGC
CGGACTGGTCTGGCGCGGGGCTGTCTGCGTGGCCACGGGGGCGGGGTGCT
GGCGGCGGCGTTCCACCCGTTCGCGCCCGTGTTGGCCAGCGGGTCGGAAG
ACCGCACGGTTCGGGTGTGGCAGGTCGGCGGGGTTGGGGGCGTGGACGGT
GGTGCTGTGGTGCTGGAGGCACATGCTGCTGATGTGAACGCCGTGCGTTG
GCGTCCCGACGGTGCCGTGCTCGCTTCCGGCGGAGACGACCTGCACGTGT
GTTTGTGG
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