mRNA_M-pyrifera_M_contig99296.22845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99296.22845.1
Unique NamemRNA_M-pyrifera_M_contig99296.22845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A2R5GMJ3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMJ3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.880e-14
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    4 VPVWVTGSESHFSLLFALDGSANEADPATAV----RRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWEKVRPQLIKHSD 309
            +P+WV GS+SH+++LF  D + NE  P  A     +RAF  +D    GF+  ++LG VL AL+L L+D  +   V +      G  +V W  FW K++P ++  SD
Sbjct:  243 LPIWVVGSDSHYTVLFGTDSTINEESPRQAALARAKRAFKEQDREENGFISVENLGEVLRALNLNLSDKQLSNLVGEVEV--PGSQLVLWQDFWRKIKPIILPPSD 346          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A813AC68_9DINO (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AC68_9DINO)

HSP 1 Score: 73.9 bits (180), Expect = 1.310e-13
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    7 PVWVTGSESHFSLLFALDGSANEADPATAVRRAFDARDPTGGGFVPKDDLGAVL-----AALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWEKVRP 288
            P+WV GS+SHF++LF+ D SANE   ++ V +AF   D  G  F+P D L  VL     A  ++P+ +     +  K     AG+D+V W  FW+ V P
Sbjct:   11 PIWVMGSQSHFTVLFSPDTSANEETISSKVLKAFSKYDEHGSKFIPLDKLKDVLMDLGMAVYYVPIVNDETAFEALKARLNSAGIDMVMWTEFWQAVAP 109          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: I2CPJ8_NANGC (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ8_NANGC)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-12
Identity = 43/115 (37.39%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 KVPVWVTGSESHFSLLFALDGSANEADPA----TAVRRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSFDA---GMDVVTWGAFWEKVRPQLIKHSDEPGSE 324
            +VPVWV GS SHF++LFAL    NE +        V+R F A DP+ GGF+   +L  VL  + L L    +  Q  +K S D    G  +V +  FW++V P L+   +  GS+
Sbjct:   79 RVPVWVIGSSSHFTVLFALGTGCNEENAGEQLLARVQRIFQAHDPSEGGFIQISELQQVL--IELDLLSVALDEQEMEKMSGDLEVQGAGIVLFDQFWQRVSPLLLAKEEGRGSD 191          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A6A4YV63_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YV63_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.580e-10
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    7 PVWVTGSESHFSLLFALDGS-----ANEADPATAVRRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSF--DAGMDVVTWGAFWEKV 282
            PVWV GS SHF++LFA D S     A++A  AT V+RAF + D  G G++P D LG VLA LH+  A    + Q+ +  S     G  +V W  FW  V
Sbjct:  242 PVWVLGSTSHFTVLFATDASLCTESASDALLAT-VQRAFQSFDTMGNGYIPIDALGQVLAKLHVDPAILANEFQLGRLYSKLQVPGAGIVLWEDFWRVV 339          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A397BDA2_9STRA (Ubiquitinyl hydrolase 1 n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BDA2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.790e-10
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    7 PVWVTGSESHFSLLFALDGS-----ANEADPATAVRRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSF--DAGMDVVTWGAFWEKV 282
            PVWV GS SHF++LFA D S     A++A  AT V+RAF + D  G G++P D LG VLA LH+  A    + Q+ +  S     G  +V W  FW  V
Sbjct:  473 PVWVLGSTSHFTVLFATDASLCTESASDALLAT-VQRAFQSFDTMGNGYIPIDALGQVLAKLHVDPAILANEFQLGRLYSKLQVPGAGIVLWEDFWRVV 570          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A3R6XDD3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XDD3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.810e-10
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    7 PVWVTGSESHFSLLFALDGS-----ANEADPATAVRRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSF--DAGMDVVTWGAFWEKV 282
            PVWV GS SHF++LFA D S     A++A  AT V+RAF + D  G G++P D LG VLA LH+  A    + Q+ +  S     G  +V W  FW  V
Sbjct:  526 PVWVLGSTSHFTVLFATDASLCTESASDALLAT-VQRAFQSFDTMGNGYIPIDALGQVLAKLHVDPAILANEFQLGRLYSKLQVPGAGIVLWEDFWRVV 623          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A397BKK2_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BKK2_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.870e-10
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    7 PVWVTGSESHFSLLFALDGS-----ANEADPATAVRRAFDARDPTGGGFVPKDDLGAVLAALHLPLADHPIQLQVWKKSSF--DAGMDVVTWGAFWEKV 282
            PVWV GS SHF++LFA D S     A++A  AT V+RAF + D  G G++P D LG VLA LH+  A    + Q+ +  S     G  +V W  FW  V
Sbjct:  728 PVWVLGSTSHFTVLFATDASLCTESASDALLAT-VQRAFQSFDTMGNGYIPIDALGQVLAKLHVDPAILANEFQLGRLYSKLQVPGAGIVLWEDFWRVV 825          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A2K1KIQ1_PHYPA (Ubiquitinyl hydrolase 1 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KIQ1_PHYPA)

HSP 1 Score: 64.3 bits (155), Expect = 9.510e-10
Identity = 37/99 (37.37%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 KVPVWVTGSESHFSLLFALDGSANEA----DPATAVRRAFDARDPTGGG-FVPKDDLGAVLAALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWEKV 282
            K P+WV GSESH+S+LFALD S  +     D    VR+AFDA D +GGG F+  + L  +L  L++ +    +       + F +  D+VTW   W+ +
Sbjct:  420 KWPIWVIGSESHYSILFALDPSVQDETDTEDHEVRVRQAFDAHDQSGGGGFISPEALQQILIDLNIQMPQDVLN------NLFSS--DIVTWNELWQAL 510          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A200QFB7_9MAGN (Ubiquitinyl hydrolase 1 n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QFB7_9MAGN)

HSP 1 Score: 63.9 bits (154), Expect = 1.300e-9
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 KVPVWVTGSESHFSLLFALDGSANEADPA----TAVRRAFDARDPTGGG-FVPKDDLGAVL--AALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWE 276
            K P+WV GSESH+++LFALD S  + +      + +R+AFDA+D +GGG F+ ++ L  VL   ++HLP           +K +    M  + W  FW+
Sbjct:  427 KYPIWVIGSESHYTVLFALDTSVQDENELEERESQIRKAFDAQDQSGGGGFISEEGLHQVLRETSVHLPQ----------EKLNHLCSMGFIVWNEFWQ 515          
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Match: A0A4P1RKA6_LUPAN (Ubiquitinyl hydrolase 1 n=2 Tax=Lupinus TaxID=3869 RepID=A0A4P1RKA6_LUPAN)

HSP 1 Score: 63.5 bits (153), Expect = 1.760e-9
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 KVPVWVTGSESHFSLLFALDGSA---NEADPA-TAVRRAFDARDPTGGG-FVPKDDLGAVLAALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWEKV 282
            K P+WV GSESH+++LFALD S    NE +   T +R+AFDA+D +GGG F+  D    VL   ++ L    ++          +  D + W  FW+ +
Sbjct:  373 KWPIWVVGSESHYTVLFALDPSIQNENELEGRETQIRKAFDAQDQSGGGGFISGDGFHQVLRETNIKLPQQKVEQL--------SNTDFIVWSEFWQVI 463          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99296.22845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GMJ3_9STRA7.880e-1436.79Ubiquitinyl hydrolase 1 n=1 Tax=Hondaea fermentalg... [more]
A0A813AC68_9DINO1.310e-1338.38Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Symbiod... [more]
I2CPJ8_NANGC1.420e-1237.39Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Nannoch... [more]
A0A6A4YV63_9STRA3.580e-1043.43Ubiquitinyl hydrolase 1 (Fragment) n=3 Tax=Aphanom... [more]
A0A397BDA2_9STRA3.790e-1043.43Ubiquitinyl hydrolase 1 n=7 Tax=Aphanomyces astaci... [more]
A0A3R6XDD3_9STRA3.810e-1043.43Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Aphanom... [more]
A0A397BKK2_9STRA3.870e-1043.43Ubiquitinyl hydrolase 1 n=2 Tax=Aphanomyces astaci... [more]
A0A2K1KIQ1_PHYPA9.510e-1037.37Ubiquitinyl hydrolase 1 n=2 Tax=Physcomitrium pate... [more]
A0A200QFB7_9MAGN1.300e-936.36Ubiquitinyl hydrolase 1 n=1 Tax=Macleaya cordata T... [more]
A0A4P1RKA6_LUPAN1.760e-936.36Ubiquitinyl hydrolase 1 n=2 Tax=Lupinus TaxID=3869... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99296contigM-pyrifera_M_contig99296:367..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.3
Seed ortholog evalue4e-08
Seed eggNOG ortholog3218.PP1S41_12V6.2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin interaction motif-containing protein
EggNOG OGs37R0E@33090,3G8FT@35493,KOG2871@1,KOG2871@2759
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.582885-CDS-M-pyrifera_M_contig99296:366..6901622816910.582885-CDS-M-pyrifera_M_contig99296:366..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99296 367..690 -
1692278250.484117-CDS-M-pyrifera_M_contig99296:366..6901692278250.484117-CDS-M-pyrifera_M_contig99296:366..690Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99296 367..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99296.22845.1prot_M-pyrifera_M_contig99296.22845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99296 367..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99296.22845.1

>prot_M-pyrifera_M_contig99296.22845.1 ID=prot_M-pyrifera_M_contig99296.22845.1|Name=mRNA_M-pyrifera_M_contig99296.22845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
KVPVWVTGSESHFSLLFALDGSANEADPATAVRRAFDARDPTGGGFVPKD
DLGAVLAALHLPLADHPIQLQVWKKSSFDAGMDVVTWGAFWEKVRPQLIK
HSDEPGSE
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mRNA from alignment at M-pyrifera_M_contig99296:367..690-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99296.22845.1 ID=mRNA_M-pyrifera_M_contig99296.22845.1|Name=mRNA_M-pyrifera_M_contig99296.22845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig99296:367..690- (Macrocystis pyrifera P11B4 male)
AAGGTGCCCGTGTGGGTGACTGGCAGTGAATCCCACTTTTCGCTGCTCTT TGCTCTCGATGGTTCCGCTAACGAAGCTGACCCAGCCACCGCCGTACGCC GAGCATTCGACGCCAGAGATCCCACAGGAGGCGGGTTTGTTCCCAAAGAT GACCTCGGAGCCGTGTTGGCAGCGCTCCACCTCCCTCTCGCCGACCACCC CATCCAGCTGCAGGTCTGGAAAAAATCCTCCTTCGATGCTGGCATGGACG TGGTCACCTGGGGCGCGTTTTGGGAAAAGGTCAGACCGCAGCTCATCAAG CACTCGGACGAACCGGGAAGTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99296:367..690-

>mRNA_M-pyrifera_M_contig99296.22845.1 ID=mRNA_M-pyrifera_M_contig99296.22845.1|Name=mRNA_M-pyrifera_M_contig99296.22845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig99296:367..690- (Macrocystis pyrifera P11B4 male)
AAGGTGCCCGTGTGGGTGACTGGCAGTGAATCCCACTTTTCGCTGCTCTT
TGCTCTCGATGGTTCCGCTAACGAAGCTGACCCAGCCACCGCCGTACGCC
GAGCATTCGACGCCAGAGATCCCACAGGAGGCGGGTTTGTTCCCAAAGAT
GACCTCGGAGCCGTGTTGGCAGCGCTCCACCTCCCTCTCGCCGACCACCC
CATCCAGCTGCAGGTCTGGAAAAAATCCTCCTTCGATGCTGGCATGGACG
TGGTCACCTGGGGCGCGTTTTGGGAAAAGGTCAGACCGCAGCTCATCAAG
CACTCGGACGAACCGGGAAGTGAGAAGGTGCCCGTGTGGGTGACTGGCAG
TGAATCCCACTTTTCGCTGCTCTTTGCTCTCGATGGTTCCGCTAACGAAG
CTGACCCAGCCACCGCCGTACGCCGAGCATTCGACGCCAGAGATCCCACA
GGAGGCGGGTTTGTTCCCAAAGATGACCTCGGAGCCGTGTTGGCAGCGCT
CCACCTCCCTCTCGCCGACCACCCCATCCAGCTGCAGGTCTGGAAAAAAT
CCTCCTTCGATGCTGGCATGGACGTGGTCACCTGGGGCGCGTTTTGGGAA
AAGGTCAGACCGCAGCTCATCAAGCACTCGGACGAACCGGGAAGTGAG
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