mRNA_M-pyrifera_M_contig9928.22841.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Match: D8LRV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRV9_ECTSI) HSP 1 Score: 459 bits (1180), Expect = 2.490e-147 Identity = 329/609 (54.02%), Postives = 386/609 (63.38%), Query Frame = 1
Query: 1 LLSLALVLLASPPGVEASRTRRRH-PIPEL---ADHNPSLTSA--GLTREGSSIPGVSIWTSKNAAINTASERVGYSRDALSRRKGGRGGGDGEASRAEASQPAFRCFIQARDWAGDSQ-QDDRGDPGDADVEPPARGTGEE-RGSVAGDEYRGVVTTEEEDDNKGLGDAAPGRLLEEGGGSDSXXXXXXXXXXXXXXXXXXS--------YEDGTSKPDESDSEEAEEEAALRSAS-RGWGRGAIGGAGSSGNS-------GRARGDGASSA--NMYENDEEACFSRVKELWEDRVILPLSRSEIEELSEGVKAEQKKLTEAAPTEWNSGLSRISSXXXXXXXXXXXXXXXXTGSYK-------GDXXETVVEXXXXXXXAGDSSLDLLYRLLLAEMCGNGSSGGLNNRWIERDSLLQLRGAATLAHNPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSKLVLLDGKALEAVRGRALSEGVPKEQLTSRHLACALVEVAGQERLSPFVVFLKDKGNAVLQSRGLCQRLTEEMKNESSRVLFLLSTASDPSVPGNSPDGPGDEAAAQEAPQQG-GGVFGTPLQWPRGPNNIPPGQSKR 1725
LL + LVLL+ VE SR RRRH P P + NPSL + GL RE SSIPGVSIWTS+ A + C+ A + QD RG GDADVEPP+RG EE R + DEY GV+TTE DS XX XXX XXXXXXXXX Y+DG+ DS E E EA+L R G + G+ S S GR RG G SA N YE+DEEACF+RVKELW DRV+LPLS++E+ ELSEGV+A+QKKL EAAPTEWNSG R + +G + D XXXXXXX +SSL LLYRLLLAEM GNGSSGGLNNRWI+RD+LLQLRGAATLAH+P+YLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGS+L+ LD KA+EAVRG+AL+EG+PKE LTSR LA AL+E+AG++ SP++VFL DKG+AVL+SRG+CQRLTEE+KNESSRVLFLLSTASDPS+PGN P GPGD+A++Q+ GG+FG+PLQWP P+ + PGQSKR
Sbjct: 11 LLGVGLVLLSP---VECSRARRRHHPTPAAYANSGDNPSLVTPQQGLIREESSIPGVSIWTSRRAXXXXXXXXXXX---------------XXXXXXXXXXXASSYCYSNAEPAGFPGECQDGRGGIGDADVEPPSRGAREEAREDLGEDEYEGVLTTEXXXXXXXXXXXXXXXXXXXXXXXDSQEXXTXXXEXXXXXXXXXXXXXXXXXXYDDGSY-----DSHEEEMEASLMGDEVRSGSSGGVAGSSMSRESSEARSRRGRGRGGGEISALANKYEDDEEACFTRVKELWHDRVLLPLSQAEVAELSEGVRADQKKLMEAAPTEWNSGPGRTAKEAALAAAKKGAGRRRDSGEDEMAQPAAVNDRPXXXXXXXXXXXXXDESSLGLLYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDAKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDD-SPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDASSQDXXXXXXGGMFGSPLQWPPQPHGMSPGQSKR 595
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Match: A0A6H5KCX2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX2_9PHAE) HSP 1 Score: 466 bits (1200), Expect = 1.260e-146 Identity = 331/613 (54.00%), Postives = 392/613 (63.95%), Query Frame = 1
Query: 1 LLSLALVLLASPPGVEASRTRRRH-PIPEL---ADHNPSLTSA--GLTREGSSIPGVSIWTSKNAAINTASERVGYSRDALSRRKGGRGGGDGEASRAEASQPAFRCF---IQARDWAGDSQQDDRGDPGDADVEPPARGTGEE-RGSVAGDEYRGVVTTEEEDDNKGLGDAAPGRLLEEGGGS---------DSXXXXXXXXXXXXXXXXXXSYEDGTSKPDESDSEEAEEEAALRSASRGWGRGAIGGAGSS---------GNSGRARGDGASSA--NMYENDEEACFSRVKELWEDRVILPLSRSEIEELSEGVKAEQKKLTEAAPTEWNSGLSRISSXXXXXXXXXXXXXXXXTGSYK-------GDXXETVVEXXXXXXXAGDSSLDLLYRLLLAEMCGNGSSGGLNNRWIERDSLLQLRGAATLAHNPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSKLVLLDGKALEAVRGRALSEGVPKEQLTSRHLACALVEVAGQERLSPFVVFLKDKGNAVLQSRGLCQRLTEEMKNESSRVLFLLSTASDPSVPGNSPDGPGDEAAAQEAPQQGGG-VFGTPLQWPRGPNNIPPGQSKR 1725
LL + LVLL+ VE SR RRRH P P + NPSL S G+ RE SSIPGVSIW SK AA ++AS R R AS + C + ++AG+ Q D RG GDADVEPP+RG EE R + DEY GV+TTE XXXXXXXXXXXXXX Y+ G+ DS E E EA+L GR + G AGSS GR RG G SA N YE+DEEACF+RVKELW DRV+LPLS++E+ ELSEGV+A+QKKL EAAPTEWNSG R + +G + D E G+SSL LLYRLLLAEM GNGS+GGLNNRWI+RD+LLQLRGAATLAH+P+YLRHTA LPRVTRGVRLVAPEATHSMQEALARSLGHSTGS+L+ LD KA+EAVRG+AL+EG+PKE LTSR LA AL+E+AG++ SP++VFL DKG+AVL+SRG+CQRLTEE+KNESSRVLFLLSTASDPS+PGN P GPGD+A+ Q+ PQQGGG +FG+PL+WP +++ PGQSKR
Sbjct: 11 LLGVGLVLLSP---VECSRARRRHHPTPAAYANSGENPSLVSPQQGMIREESSIPGVSIWFSKKAAASSASAR--------------RXXXXXXXXADPASSASSYCGDSNAEPAEFAGECQ-DGRGGIGDADVEPPSRGAREEVREDLGEDEYEGVLTTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEDHSQXXXXXXXXXXXXXXXYDXGSY-----DSNEEEIEASLMGDEIRGGR-SSGVAGSSMSRDSSEPRSRRGRGRGGGEISALANKYEDDEEACFTRVKELWHDRVLLPLSQAEVAELSEGVRADQKKLMEAAPTEWNSGPGRTAKEAALAAAKKGAGRCSDSGEDEMAQPAAANDRPVGDGEAGSGGVVDGESSLGLLYRLLLAEMQGNGSTGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTAALPRVTRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDSKAIEAVRGQALAEGIPKEHLTSRQLASALLELAGEDD-SPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPSLPGNPPAGPGDDASPQDDPQQGGGGMFGSPLKWPPQTHDMSPGQSKR 598
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Match: A0A7S1TYQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ8_9STRA) HSP 1 Score: 110 bits (274), Expect = 2.260e-23 Identity = 64/157 (40.76%), Postives = 91/157 (57.96%), Query Frame = 1
Query: 1132 WIERDSLLQLRGAATLAHNPEYLRHT----ANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSKLVLLDGKALEAVRGRALSEGVPKEQLTSRHLACALVEVAGQERLSPFVVFLKDKGNAVLQSRGLCQRLTEEMKNESSRVLFLLSTASDPSV 1590
W + + L L+G LA PEY H A L +RGVR A+H +QE A +L H++ +KLV LD + L+ VR AL VP+ LT L LV +A ++ +P+VVFL+++G AV +S +T + N SRVLFLL+TASDP++
Sbjct: 97 WCDPEFLAALKGNCVLAQRPEYQNHALGLQAGLDTWSRGVRFSGDPASHVLQEVTAVALAHASRAKLVFLDERTLDGVRDSALEANVPQRYLTPARLVAGLVALAERDD-APYVVFLRNRGAAVTRSAAAMDVVTRALDNPRSRVLFLLATASDPTL 252
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Match: A0A0G4ELA6_VITBC (AAA domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ELA6_VITBC) HSP 1 Score: 109 bits (273), Expect = 2.930e-21 Identity = 69/172 (40.12%), Postives = 101/172 (58.72%), Query Frame = 1
Query: 1135 IERDSLLQLRGAATLAHNPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSKLVLLDGKALEAVRGRALSE-GVPKEQLTSRHLACALVE-VAGQERLSPFVVFLKDKGNAVLQSRGLCQRLTEEMKNESSRVLFLLSTASDPSVPGNSPDGPGDEAAAQEAP 1644
IER +L QL G L+H PE +LP ++ GVRL + ATHSM + LA +LGHSTGS++VL+D K++ +V A + + +E +T+ AL+E R PF+V L+D+G +VL+S C+ L E+ N SRV F+L A DP++ + P G AA +P
Sbjct: 243 IERGTLQQLWGGVKLSHTPEVTADLYHLPGLSGGVRLSSSGATHSMLDVLAVALGHSTGSRIVLVDDKSIRSVIDEAAASLKINRETITTYQAINALLEETKAPSRDPPFLVVLRDRGRSVLRSAESCKLLVNELTNRLSRVFFVLIGADDPAL--HPPAGAAGAEAADPSP 412
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Match: A0A7S1NZC1_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NZC1_9ALVE) HSP 1 Score: 69.3 bits (168), Expect = 4.560e-9 Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 1135 IERDSLLQLRGAATLAHNPEYLRHTANLPRVTRGVRLVAPEATHSMQEALARSLGHSTGSKLVLLDGKALEAV 1353
IER +L QL G L+H PE +LP ++ GVRL + ATHSM + LA +LGHSTGS++VL+D K++ +V
Sbjct: 270 IERGTLQQLWGGVKLSHTPEVTADLYHLPGLSGGVRLSSSGATHSMLDVLAVALGHSTGSRIVLVDDKSIRSV 342 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9928.22841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig9928.22841.1 >prot_M-pyrifera_M_contig9928.22841.1 ID=prot_M-pyrifera_M_contig9928.22841.1|Name=mRNA_M-pyrifera_M_contig9928.22841.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=575bp LLSLALVLLASPPGVEASRTRRRHPIPELADHNPSLTSAGLTREGSSIPGback to top mRNA from alignment at M-pyrifera_M_contig9928:318..10549+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig9928.22841.1 ID=mRNA_M-pyrifera_M_contig9928.22841.1|Name=mRNA_M-pyrifera_M_contig9928.22841.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=10232bp|location=Sequence derived from alignment at M-pyrifera_M_contig9928:318..10549+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig9928:318..10549+ >mRNA_M-pyrifera_M_contig9928.22841.1 ID=mRNA_M-pyrifera_M_contig9928.22841.1|Name=mRNA_M-pyrifera_M_contig9928.22841.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3450bp|location=Sequence derived from alignment at M-pyrifera_M_contig9928:318..10549+ (Macrocystis pyrifera P11B4 male)back to top |