mRNA_M-pyrifera_M_contig99272.22840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99272.22840.1
Unique NamemRNA_M-pyrifera_M_contig99272.22840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99272.22840.1 vs. uniprot
Match: A0A2E0LJE6_9GAMM (Uncharacterized protein n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E0LJE6_9GAMM)

HSP 1 Score: 59.3 bits (142), Expect = 6.230e-9
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    7 IFDAQGFVDDCLAAVATDDPIAGVSRVMEKAISDPAALLAGVD--ASGDGVVSLCMSDTLTALQVSTEPQIESPIHNHLTW 243
            +FD Q F++DC AAV +DDP   V ++ME A +D  A+   +   A    V  L   + LT L+V T     SPIHNHL W
Sbjct:    1 MFDLQAFIEDCKAAVRSDDPQGEVRQLMEAAFADREAVRGALADAAPPKDVAPLYADEHLTVLRVFTPANFISPIHNHLMW 81
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BLAST of mRNA_M-pyrifera_M_contig99272.22840.1 vs. uniprot
Match: A0A7V9NQF5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NQF5_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 9.530e-6
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:    7 IFDAQGFVDDCLAAVATDDPIAGVSRVMEKAISDPAALLAGVDASGDGVVSLCMSDTLTALQVSTEPQIESPIHNHLTW 243
            +FD +GFV  C AA+A  +P   + +V+++A++D +A+   +     G+ +L  +D LT L V   P+++   H+H  W
Sbjct:    1 MFDVEGFVAQCQAAIAEVEPRRAIRQVLDRALADRSAMADALKPEEGGLNTLHRADDLTVLHVVWAPKMKLLPHDHRMW 79
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BLAST of mRNA_M-pyrifera_M_contig99272.22840.1 vs. uniprot
Match: A0A2E6X4I0_9PROT (Uncharacterized protein n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E6X4I0_9PROT)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 1 
Query:    7 IFDAQGFVDDCLAAVATDDPIAGVSRVMEKAISDPAALLAGV-DASGDGVVSLCMSDTLTALQVSTEPQIESPIHNHLTW 243
            +F  + F++DC  A+   D    V  ++++A+SDPAAL+  + + S  GV  L +S+ LT L +   P++    HNH  W
Sbjct:    1 MFKIEPFIEDCKLAIRESDSHIAVKELVDRAVSDPAALMEALGEPSRGGVDQLYVSEGLTILNLVWAPRMTLRPHNHNMW 80
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99272.22840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E0LJE6_9GAMM6.230e-941.98Uncharacterized protein n=1 Tax=Porticoccaceae bac... [more]
A0A7V9NQF5_9ACTN9.530e-631.65Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2E6X4I0_9PROT1.870e-533.75Uncharacterized protein n=1 Tax=Magnetovibrio sp. ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99272contigM-pyrifera_M_contig99272:1..243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816910.2105083-CDS-M-pyrifera_M_contig99272:0..2431622816910.2105083-CDS-M-pyrifera_M_contig99272:0..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99272 1..243 -
1692278250.2491536-CDS-M-pyrifera_M_contig99272:0..2431692278250.2491536-CDS-M-pyrifera_M_contig99272:0..243Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99272 1..243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99272.22840.1prot_M-pyrifera_M_contig99272.22840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99272 1..243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99272.22840.1

>prot_M-pyrifera_M_contig99272.22840.1 ID=prot_M-pyrifera_M_contig99272.22840.1|Name=mRNA_M-pyrifera_M_contig99272.22840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MSIFDAQGFVDDCLAAVATDDPIAGVSRVMEKAISDPAALLAGVDASGDG
VVSLCMSDTLTALQVSTEPQIESPIHNHLTW
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mRNA from alignment at M-pyrifera_M_contig99272:1..243-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99272.22840.1 ID=mRNA_M-pyrifera_M_contig99272.22840.1|Name=mRNA_M-pyrifera_M_contig99272.22840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig99272:1..243- (Macrocystis pyrifera P11B4 male)
ATGAGTATTTTCGATGCACAGGGTTTTGTTGACGACTGCCTTGCGGCGGT
AGCCACCGACGATCCGATCGCAGGTGTCAGTCGGGTCATGGAAAAAGCGA
TCTCAGATCCCGCGGCCTTGCTCGCCGGGGTGGACGCAAGCGGTGATGGC
GTAGTGAGCTTGTGTATGTCCGATACACTGACCGCTCTACAGGTTTCGAC
TGAGCCGCAGATAGAAAGTCCCATTCATAATCACCTGACATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99272:1..243-

>mRNA_M-pyrifera_M_contig99272.22840.1 ID=mRNA_M-pyrifera_M_contig99272.22840.1|Name=mRNA_M-pyrifera_M_contig99272.22840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig99272:1..243- (Macrocystis pyrifera P11B4 male)
ATGAGTATTTTCGATGCACAGGGTTTTGTTGACGACTGCCTTGCGGCGGT
AGCCACCGACGATCCGATCGCAGGTGTCAGTCGGGTCATGGAAAAAGCGA
TCTCAGATCCCGCGGCCTTGCTCGCCGGGGTGGACGCAAGCGGTGATGGC
GTAGTGAGCTTGTGTATGTCCGATACACTGACCGCTCTACAGGTTTCGAC
TGAGCCGCAGATAGAAAGTCCCATTCATAATCACCTGACATGGATGAGTA
TTTTCGATGCACAGGGTTTTGTTGACGACTGCCTTGCGGCGGTAGCCACC
GACGATCCGATCGCAGGTGTCAGTCGGGTCATGGAAAAAGCGATCTCAGA
TCCCGCGGCCTTGCTCGCCGGGGTGGACGCAAGCGGTGATGGCGTAGTGA
GCTTGTGTATGTCCGATACACTGACCGCTCTACAGGTTTCGACTGAGCCG
CAGATAGAAAGTCCCATTCATAATCACCTGACATGG
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