mRNA_M-pyrifera_M_contig99249.22831.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99249.22831.1
Unique NamemRNA_M-pyrifera_M_contig99249.22831.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: A0A6H5JHB7_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-9
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQ 99
            +G+L+KNKDL KAFGT+NQLEAC+IILDKGEMQ
Sbjct:   64 KGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQ 96
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BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: A0A0B2VZK2_TOXCA (Ribosome maturation protein SBDS n=4 Tax=Ascaridoidea TaxID=33256 RepID=A0A0B2VZK2_TOXCA)

HSP 1 Score: 47.4 bits (111), Expect = 4.720e-5
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQ 99
            +G+++K ++L  AFGTE+QLE CK+ILDKG++Q
Sbjct:   64 KGLIAKREELNAAFGTEDQLEICKLILDKGDLQ 96
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BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: UPI0001CBA9C6 (ribosome maturation protein SBDS-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA9C6)

HSP 1 Score: 47.0 bits (110), Expect = 6.480e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQARER 111
            +G +SK +DLK+AFGTE+Q E CK+IL KGE Q  E+
Sbjct:   62 KGQVSKKEDLKRAFGTEDQTEICKMILAKGEFQVSEK 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHB7_9PHAE1.220e-981.82C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A0B2VZK2_TOXCA4.720e-557.58Ribosome maturation protein SBDS n=4 Tax=Ascaridoi... [more]
UPI0001CBA9C66.480e-559.46ribosome maturation protein SBDS-like n=1 Tax=Sacc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99249contigM-pyrifera_M_contig99249:171..281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.720203-CDS-M-pyrifera_M_contig99249:170..2811622816909.720203-CDS-M-pyrifera_M_contig99249:170..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99249 171..281 -
1692278249.9424274-CDS-M-pyrifera_M_contig99249:170..2811692278249.9424274-CDS-M-pyrifera_M_contig99249:170..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99249 171..281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99249.22831.1prot_M-pyrifera_M_contig99249.22831.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99249 171..281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99249.22831.1

>prot_M-pyrifera_M_contig99249.22831.1 ID=prot_M-pyrifera_M_contig99249.22831.1|Name=mRNA_M-pyrifera_M_contig99249.22831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
QGILSKNKDLKKAFGTENQLEACKIILDKGEMQARER
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mRNA from alignment at M-pyrifera_M_contig99249:171..281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99249.22831.1 ID=mRNA_M-pyrifera_M_contig99249.22831.1|Name=mRNA_M-pyrifera_M_contig99249.22831.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=111bp|location=Sequence derived from alignment at M-pyrifera_M_contig99249:171..281- (Macrocystis pyrifera P11B4 male)
CAGGGTATCCTGTCGAAAAACAAGGATCTCAAGAAGGCCTTCGGGACGGA
AAATCAACTGGAGGCGTGCAAGATCATCCTCGACAAGGGGGAGATGCAGG
CGAGAGAGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99249:171..281-

>mRNA_M-pyrifera_M_contig99249.22831.1 ID=mRNA_M-pyrifera_M_contig99249.22831.1|Name=mRNA_M-pyrifera_M_contig99249.22831.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig99249:171..281- (Macrocystis pyrifera P11B4 male)
CAGGGTATCCTGTCGAAAAACAAGGATCTCAAGAAGGCCTTCGGGACGGA
AAATCAACTGGAGGCGTGCAAGATCATCCTCGACAAGGGGGAGATGCAGG
CGAGAGAGCGACAGGGTATCCTGTCGAAAAACAAGGATCTCAAGAAGGCC
TTCGGGACGGAAAATCAACTGGAGGCGTGCAAGATCATCCTCGACAAGGG
GGAGATGCAGGCGAGAGAGCGA
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