mRNA_M-pyrifera_M_contig992.22828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig992.22828.1
Unique NamemRNA_M-pyrifera_M_contig992.22828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig992.22828.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.310e-55
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:    3 GTIITQVKMEGRVPASTHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSISSFLPDNSRFIFSGALIPKQIKRLLKMKGLAAVVTRDAESVVAMEEAMNA 311
            GTIIT+VKMEGRVPAS+HLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQL SISS LPDNSRFIFSGALIPKQIKR+LKMKGL+AVV RDAESVVAMEE+++A
Sbjct:   24 GTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDA 126
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BLAST of mRNA_M-pyrifera_M_contig992.22828.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.030e-28
Identity = 51/100 (51.00%), Postives = 77/100 (77.00%), Query Frame = 3 
Query:    6 TIITQVKMEGRVPASTHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSISSFLPDNSRFIFSGALIPKQIKRLLKMKGLAAVVTRDAESVVAMEEAM 305
            T IT VK +G VPAS+++VYDC+HG+WLL Q+AYDRKI+LF+SRS   +  +++ +PD+++ +F+GA +PK  KRLLK++ L +VV  DA +  A+ +AM
Sbjct:   59 TYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAM 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig992.22828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMZ7_ECTSI1.310e-5590.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMK3_9STRA2.030e-2851.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig992contigM-pyrifera_M_contig992:376..1403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size312
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig992.22828.1prot_M-pyrifera_M_contig992.22828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig992 376..1377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.2328997-CDS-M-pyrifera_M_contig992:375..4991622816909.2328997-CDS-M-pyrifera_M_contig992:375..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 376..499 -
1692278249.563754-CDS-M-pyrifera_M_contig992:375..4991692278249.563754-CDS-M-pyrifera_M_contig992:375..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 376..499 -
1622816909.250287-CDS-M-pyrifera_M_contig992:771..8221622816909.250287-CDS-M-pyrifera_M_contig992:771..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 772..822 -
1692278249.5884984-CDS-M-pyrifera_M_contig992:771..8221692278249.5884984-CDS-M-pyrifera_M_contig992:771..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 772..822 -
1622816909.2648828-CDS-M-pyrifera_M_contig992:1267..13771622816909.2648828-CDS-M-pyrifera_M_contig992:1267..1377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 1268..1377 -
1692278249.601355-CDS-M-pyrifera_M_contig992:1267..13771692278249.601355-CDS-M-pyrifera_M_contig992:1267..1377Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig992 1268..1377 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.2784352-UTR-M-pyrifera_M_contig992:1377..14031622816909.2784352-UTR-M-pyrifera_M_contig992:1377..1403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig992 1378..1403 -
1692278249.6102407-UTR-M-pyrifera_M_contig992:1377..14031692278249.6102407-UTR-M-pyrifera_M_contig992:1377..1403Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig992 1378..1403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig992.22828.1

>prot_M-pyrifera_M_contig992.22828.1 ID=prot_M-pyrifera_M_contig992.22828.1|Name=mRNA_M-pyrifera_M_contig992.22828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MEGRVPASTHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLGSISSFLP
DNSRFIFSGALIPKQIKRLLKMKGLAAVVTRDAESVVAMEEAMNA
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mRNA from alignment at M-pyrifera_M_contig992:376..1403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig992.22828.1 ID=mRNA_M-pyrifera_M_contig992.22828.1|Name=mRNA_M-pyrifera_M_contig992.22828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1028bp|location=Sequence derived from alignment at M-pyrifera_M_contig992:376..1403- (Macrocystis pyrifera P11B4 male)
TCGGAACCATCATCACTCAGGTTAAGATGGAGGGACGAGTGCCGGCGTCG
ACCCACTTGGTGTACGACTGTTCACACGGGGAGTGGCTCTTGGCTCAGAT
GGCGTACGACCGGAAGATTCGACTTTTCTCCAGCAGGTGCTCGCCCAGAG
ATCGCACGTGTCTGCTGTTCTGCTCTACTTGTACTCGTTTCGACTGTTTT
TTGCTGCGAGGTGCGTCGTGGTTAATAATGGCGCAGTTTCGTGGTGGGGA
AGAATGACGGCACACAGGGGGTGATTCGATGGTCGACGCGTAGAATCGCC
CGGCAGGCTGCCTTTCAGGGGCGTCTTGGTGCTGATGCCGATTTGAGTTG
CGCGCGATGTATCTATCATACGAAGTATAGCTCTATGTTAATGTTGCCAA
AATGTAACAGCTATACGATACTCGAGCTTCGTTTTGGCTTTCGGTATACG
CCAAGAGTTGGCCGTGGACACCCCTGTTGTATTTGGCAGCCTAAAATTAT
GCGCGTAATCCCGCCGCCACAGCCAAAATTGACCCCGCCCCCCCCCTCTC
GCCGGAATGCGCACCTGTTCTTGGAATGAAGATCTGTCAGGCAGCTCGGA
AGCATCTCTTCGTTTTTGCCGGACAACTCACGGTGAGAGATGTGCACAGT
TAGCCAAGCGTGTGGGATCGACCTTAGGTACAGGCGAATATGAGCACTGC
GTACTACCCGCTTCGGTCGCACGGACTGCCGCACTTGACATTGGTTGCAG
CATGCCGTCAACTATGCAATGCCTGCTTCTCCTCTGCACGATAGCCCTGT
GCAGTCTGGTTATTTTCTTATCAAGCTCGAGTGACAGACCTATCGAAAGC
CCTCCCTTTGTTTTTTTTTTGCGGTGATATATATATATGTATATATCTTC
GCAGGTTCATCTTTTCCGGAGCACTTATTCCGAAGCAAATCAAACGTCTG
CTGAAAATGAAGGGGCTGGCCGCTGTCGTGACCAGGGACGCGGAGAGTGT
GGTGGCGATGGAGGAGGCTATGAACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig992:376..1403-

>mRNA_M-pyrifera_M_contig992.22828.1 ID=mRNA_M-pyrifera_M_contig992.22828.1|Name=mRNA_M-pyrifera_M_contig992.22828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig992:376..1403- (Macrocystis pyrifera P11B4 male)
ATGGAGGGACGAGTGCCGGCGTCGACCCACTTGGTGTACGACTGTTCACA
CGGGGAGTGGCTCTTGGCTCAGATGGCGTACGACCGGAAGATTCGACTTT
TCTCCAGCAGATGGAGGGACGAGTGCCGGCGTCGACCCACTTGGTGTACG
ACTGTTCACACGGGGAGTGGCTCTTGGCTCAGATGGCGTACGACCGGAAG
ATTCGACTTTTCTCCAGCAGATCTGTCAGGCAGCTCGGAAGCATCTCTTC
GTTTTTGCCGGACAACTCACGATCTGTCAGGCAGCTCGGAAGCATCTCTT
CGTTTTTGCCGGACAACTCACGGTTCATCTTTTCCGGAGCACTTATTCCG
AAGCAAATCAAACGTCTGCTGAAAATGAAGGGGCTGGCCGCTGTCGTGAC
CAGGGACGCGGAGAGTGTGGTGGCGATGGAGGAGGCTATGAACGCGGTTC
ATCTTTTCCGGAGCACTTATTCCGAAGCAAATCAAACGTCTGCTGAAAAT
GAAGGGGCTGGCCGCTGTCGTGACCAGGGACGCGGAGAGTGTGGTGGCGA
TGGAGGAGGCTATGAACGCG
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