mRNA_M-pyrifera_M_contig99190.22821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99190.22821.1
Unique NamemRNA_M-pyrifera_M_contig99190.22821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A5A8D5A5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5A5_CAFRO)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-18
Identity = 38/73 (52.05%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 WIDNVDIP-IDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
            W D++D P +D+ +  L  RY+LS YW +AT+MAVG+GD+HA+T  ER +S+F  ++GA+FFGIIVA+V++L+
Sbjct:  376 WFDSIDKPSVDQRL--LGARYLLSLYWVVATLMAVGFGDIHAITTVERAYSIFTQIVGAIFFGIIVAHVAQLL 446          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A812MPZ4_9DINO (HCN4 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A812MPZ4_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 1.350e-18
Identity = 38/73 (52.05%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 WIDNVDIP-IDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
            W D++D P +D+ +  L  RY+LS YW +AT+MAVG+GD+HA+T  ER +S+F  ++GA+FFGIIVA+V++L+
Sbjct:  549 WFDSIDKPSVDQRL--LGARYLLSLYWVVATLMAVGFGDIHAITTVERAYSIFTQIVGAIFFGIIVAHVAQLL 619          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A2R5GCA9_9STRA (Potassium voltage-gated channel subfamily H member 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCA9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-15
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    7 DNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVS 207
            DN  +    +  ++  +Y+ SFYWT+ATMMAVGYGD+HAV D ER++S+F  ++GA  FG I+AN+S
Sbjct:  306 DNWVMAHGLSSDSIPTQYLASFYWTVATMMAVGYGDIHAVNDMERMYSIFVQVVGATCFGFIIANIS 372          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A024GIQ3_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GIQ3_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.110e-14
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSEL 213
            W+ NV+  I      ++  Y++SFYW   TMM+VGYGD+  +TD+ERIFS+F ML+G+V  G+I+AN+  L
Sbjct:  263 WVSNVETRI------MKYPYLVSFYWVSGTMMSVGYGDIVGITDAERIFSIFVMLLGSVCVGLIIANIQML 327          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: F0W479_9STRA (Potassium/sodium hyperpolarizationactivated cyclic nucleotidegated channel putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W479_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.890e-14
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSEL 213
            W+ NVD  +      +   Y++SFYW   TMM+VGYGD+  +TD+ERIF++F ML+G+V  G+I+AN+  L
Sbjct:  267 WVSNVDAKM------MEYPYLMSFYWVAGTMMSVGYGDIVGITDAERIFAIFVMLLGSVCVGLIIANIQML 331          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A7S2CIN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CIN5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.460e-14
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:    1 WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
            W+DN     D   + L  +YI S YWT+ATM+AVGYGD++A+   ERI+++   L GA+ FG +V  +  ++
Sbjct:   25 WLDNPLDGFDLRNATLEVQYITSLYWTVATMLAVGYGDIYAMNTEERIYAIVTELSGAIMFGAVVGTIGVIL 96          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A7S2MIN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MIN6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.190e-13
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
            W+D  +I      SN   +Y+ S YWT+ATM+AVGYGDV+AV   ER++++   L GAV FG ++  +S L+
Sbjct:   50 WVDYFEIR----NSNENFQYVTSLYWTVATMLAVGYGDVYAVNTQERVYAIATELFGAVMFGAVIGTISVLV 117          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A7S2FFX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFX3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.740e-13
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   31 KTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
             T + +  +Y+ SFYWTIATM+AVGYGD++A T  ER++S+   L+G++ FG ++  VS L+
Sbjct:   45 NTTTTVEMQYVTSFYWTIATMLAVGYGDIYAATSGERVYSIVTQLLGSIVFGTVIGTVSVLV 106          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A1W0A984_9STRA (Tetrameric potassium-selective cyclic nucleotide gated channel-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A984_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.560e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1
Query:   55 RYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSELI 216
            RY+ S YW I T+  VGYGD+HAV+ SER+F++F M+IGA  FG ++ N+S L+
Sbjct:  326 RYLYSLYWVITTLTGVGYGDIHAVSVSERVFAIFAMMIGASVFGFVIGNISSLL 379          
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Match: A0A3F2RTM1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTM1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-12
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFSLFCMLIGAVFFGIIVANVSEL 213
            W+ N+D         L   Y++SFYW   TMM+VGYGDV+A+TD ER++S+F   +G++  G+I+AN+  L
Sbjct:  703 WVTNID------EHGLESPYLVSFYWVSNTMMSVGYGDVYAITDIERLYSIFVACLGSISVGMIIANIQML 767          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99190.22821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D5A5_CAFRO1.350e-1852.05Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812MPZ4_9DINO1.350e-1852.05HCN4 protein n=3 Tax=Sar TaxID=2698737 RepID=A0A81... [more]
A0A2R5GCA9_9STRA1.750e-1550.75Potassium voltage-gated channel subfamily H member... [more]
A0A024GIQ3_9STRA2.110e-1447.89Cyclic nucleotide-binding domain-containing protei... [more]
F0W479_9STRA2.890e-1446.48Potassium/sodium hyperpolarizationactivated cyclic... [more]
A0A7S2CIN5_9STRA7.460e-1441.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2MIN6_9STRA2.190e-1344.44Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2FFX3_9STRA2.740e-1346.77Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A1W0A984_9STRA6.560e-1353.70Tetrameric potassium-selective cyclic nucleotide g... [more]
A0A3F2RTM1_9STRA1.220e-1243.66Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99190contigM-pyrifera_M_contig99190:394..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2e-11
Seed eggNOG ortholog653948.CCA15894
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsKOG0498@1,KOG0498@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.9734766-CDS-M-pyrifera_M_contig99190:393..6091622816908.9734766-CDS-M-pyrifera_M_contig99190:393..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99190 394..609 +
1692278249.4383862-CDS-M-pyrifera_M_contig99190:393..6091692278249.4383862-CDS-M-pyrifera_M_contig99190:393..609Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99190 394..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99190.22821.1prot_M-pyrifera_M_contig99190.22821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99190 394..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99190.22821.1

>prot_M-pyrifera_M_contig99190.22821.1 ID=prot_M-pyrifera_M_contig99190.22821.1|Name=mRNA_M-pyrifera_M_contig99190.22821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
WIDNVDIPIDKTMSNLRGRYILSFYWTIATMMAVGYGDVHAVTDSERIFS
LFCMLIGAVFFGIIVANVSELI
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mRNA from alignment at M-pyrifera_M_contig99190:394..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99190.22821.1 ID=mRNA_M-pyrifera_M_contig99190.22821.1|Name=mRNA_M-pyrifera_M_contig99190.22821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig99190:394..609+ (Macrocystis pyrifera P11B4 male)
TGGATTGATAATGTTGACATCCCAATCGACAAAACCATGTCAAATCTTCG TGGTCGGTACATTCTCTCGTTCTACTGGACGATTGCGACAATGATGGCGG TTGGGTATGGAGATGTACACGCCGTGACTGACTCGGAACGAATCTTCTCC CTCTTTTGCATGTTGATTGGCGCAGTGTTTTTTGGTATCATTGTCGCCAA TGTGAGTGAATTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99190:394..609+

>mRNA_M-pyrifera_M_contig99190.22821.1 ID=mRNA_M-pyrifera_M_contig99190.22821.1|Name=mRNA_M-pyrifera_M_contig99190.22821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig99190:394..609+ (Macrocystis pyrifera P11B4 male)
TGGATTGATAATGTTGACATCCCAATCGACAAAACCATGTCAAATCTTCG
TGGTCGGTACATTCTCTCGTTCTACTGGACGATTGCGACAATGATGGCGG
TTGGGTATGGAGATGTACACGCCGTGACTGACTCGGAACGAATCTTCTCC
CTCTTTTGCATGTTGATTGGCGCAGTGTTTTTTGGTATCATTGTCGCCAA
TGTGAGTGAATTGATCTGGATTGATAATGTTGACATCCCAATCGACAAAA
CCATGTCAAATCTTCGTGGTCGGTACATTCTCTCGTTCTACTGGACGATT
GCGACAATGATGGCGGTTGGGTATGGAGATGTACACGCCGTGACTGACTC
GGAACGAATCTTCTCCCTCTTTTGCATGTTGATTGGCGCAGTGTTTTTTG
GTATCATTGTCGCCAATGTGAGTGAATTGATC
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