mRNA_M-pyrifera_M_contig9919.22820.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9919.22820.1
Unique NamemRNA_M-pyrifera_M_contig9919.22820.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: D8LJJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.530e-46
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSFG 282
            V+ASSPRYLRVE+EA  A+PASVDD EFYFTPGDAL+QFRCARR+G TD GA RRRMD IR ALKFE IPVLRNRKRA F GESP+DSFGPSFG
Sbjct:  179 VIASSPRYLRVEFEAVNAIPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRRRMDGIRQALKFESIPVLRNRKRALFFGESPIDSFGPSFG 272
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A6H5K8Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z9_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 2.800e-45
Identity = 75/94 (79.79%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSFG 282
            V+A+SPRYLRVE+E+  A+PASVDD EFYFTPGDAL+QFRCARR+G TD GA RRRMD IR ALKFE IPVLRNRKRA F GESP+DSFGPSFG
Sbjct:  179 VIATSPRYLRVEFESPNAIPASVDDAEFYFTPGDALVQFRCARRNGPTDFGANRRRMDGIRQALKFESIPVLRNRKRALFFGESPIDSFGPSFG 272
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A4D9CVY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVY8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 5.800e-25
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 VASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSF 279
            +++  RYLR E +       ++DD EFYFTP D+++QFR ARR    D GA ++RM+ IR+AL FE IPVLRNR+RA F  ESPLD +GPS+
Sbjct:   17 ISAEDRYLRFEIKED----GNIDDTEFYFTPNDSIIQFRSARRGDGRDRGANQKRMEKIRIALGFEKIPVLRNRRRALFFLESPLDGWGPSY 104
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A7S2MSC2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MSC2_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 6.480e-25
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPS 276
            V     RYLR E+E +  +  ++DD +F+FTP D L+QF+  RR G +D G  R+R++ +R+AL +E +PVLRNR+RA  + ESPLDSFGP+
Sbjct:  122 VAEDGERYLRAEFEDSGFIGVAIDDCQFFFTPNDTLVQFKAVRRGGASDFGVNRKRLEKLRIALGWEKVPVLRNRRRALVVVESPLDSFGPA 213
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A812SAQ5_9DINO (COMT protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SAQ5_9DINO)

HSP 1 Score: 103 bits (257), Expect = 9.750e-24
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:   19 RYLRVEYEA-TRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPS 276
            RYLR E+      +    DDVE+YFTP D +LQFR  RRSG  D G  RRR+++IRLAL ++ +PVLRNR+RAFF GESPLD FGP+
Sbjct:  649 RYLRAEFLVDVPVLGKDADDVEWYFTPDDLILQFRAERRSGSPDFGENRRRLEAIRLALGWDIVPVLRNRQRAFFFGESPLDQFGPA 735
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: W7TBJ3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBJ3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.060e-23
Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    4 VASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSF 279
            +++  RYLR E +       ++DD EFYFTP D+++QFR ARR    D GA ++RM+ IR+AL FE IPVLRNR+RA F  ESPLD +GPS+
Sbjct:  181 ISAEDRYLRFEIKED----GNIDDTEFYFTPNDSIIQFRSARRGDGRDRGANQKRMEKIRIALGFEKIPVLRNRRRALFFLESPLDGWGPSY 268
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: R1BF77_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BF77_EMIHU)

HSP 1 Score: 98.6 bits (244), Expect = 2.190e-23
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPS 276
            VV    RYLR E+ +   +  +VDD EF+FTP D L+QFR ARR    D GA R+R++  R+AL +E + VLRNR+RA  + ESP DSFGP+
Sbjct:   83 VVEQDERYLRAEFASRGPLGDAVDDAEFFFTPDDVLVQFRAARRGDAPDFGANRKRLERARIALGWEKVEVLRNRRRALVVVESPFDSFGPA 174
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A7S2SS72_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS72_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.320e-22
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSFG 282
            VVA   RYLR+ Y  T    A VDDVEF+F   D  +QFR ARR G  DLG  RRR++ +R+ L+++ +PV+RNR+R   + ESP D+FGP+ G
Sbjct:   31 VVAREKRYLRLMY--TSRGGAEVDDVEFFFPENDDTVQFRAARRGGSRDLGENRRRLEELRIHLRWDTVPVVRNRRRTLVVVESPFDTFGPAVG 122
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A0G4GCX0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GCX0_VITBC)

HSP 1 Score: 96.7 bits (239), Expect = 3.720e-22
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    4 VASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSFGK 285
            V SS RYLRVE  A   +  +VDDVEFY TPGD  +QFR ARR  + D G  RRR++SIR+AL  E +PVLR R R  F  ESPLD FGPS  K
Sbjct:  177 VVSSERYLRVEI-ADETLK-TVDDVEFYLTPGDNTVQFRAARRDSLPDFGVNRRRLESIRIALGLEKVPVLRYR-RTIFPWESPLDQFGPSMAK 267
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BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Match: A0A7S0EPF0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPF0_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 3.750e-22
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDLGAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGP 273
            V+    RYLR E+ +   +  SVDDVE+YFTP D L+QFR  RR    D GA ++R++ +R+ L +E + +LRNR+RA  + ESP DSFGP
Sbjct:   91 VIEKDGRYLRAEFASKGPLGESVDDVEWYFTPNDVLVQFRAERRGAGPDFGANKKRLEKMRIGLGWERVEILRNRRRALVVVESPFDSFGP 181
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9919.22820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJJ3_ECTSI1.530e-4681.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Z9_9PHAE2.800e-4579.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CVY8_9STRA5.800e-2553.26Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2MSC2_9EUKA6.480e-2548.91Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A812SAQ5_9DINO9.750e-2458.62COMT protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
W7TBJ3_9STRA2.060e-2353.26Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
R1BF77_EMIHU2.190e-2351.09Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2SS72_9STRA2.320e-2250.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4GCX0_VITBC3.720e-2258.51Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S0EPF0_9EUKA3.750e-2248.35Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9919contigM-pyrifera_M_contig9919:7562..9237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue6.1e-37
Seed eggNOG ortholog2880.D8LJJ3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3E0@1,2SAH2@2759
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-17_002200.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size287
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.9241898-CDS-M-pyrifera_M_contig9919:7561..77651622816908.9241898-CDS-M-pyrifera_M_contig9919:7561..7765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9919 7562..7765 +
1692278249.4182901-CDS-M-pyrifera_M_contig9919:7561..77651692278249.4182901-CDS-M-pyrifera_M_contig9919:7561..7765Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9919 7562..7765 +
1622816908.9390504-CDS-M-pyrifera_M_contig9919:9154..92351622816908.9390504-CDS-M-pyrifera_M_contig9919:9154..9235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9919 9155..9235 +
1692278249.4284642-CDS-M-pyrifera_M_contig9919:9154..92351692278249.4284642-CDS-M-pyrifera_M_contig9919:9154..9235Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9919 9155..9235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9919.22820.1prot_M-pyrifera_M_contig9919.22820.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9919 7562..9235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9919.22820.1

>prot_M-pyrifera_M_contig9919.22820.1 ID=prot_M-pyrifera_M_contig9919.22820.1|Name=mRNA_M-pyrifera_M_contig9919.22820.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
VVASSPRYLRVEYEATRAMPASVDDVEFYFTPGDALLQFRCARRSGVTDL
GAGRRRMDSIRLALKFEPIPVLRNRKRAFFIGESPLDSFGPSFGK
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mRNA from alignment at M-pyrifera_M_contig9919:7562..9237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9919.22820.1 ID=mRNA_M-pyrifera_M_contig9919.22820.1|Name=mRNA_M-pyrifera_M_contig9919.22820.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1676bp|location=Sequence derived from alignment at M-pyrifera_M_contig9919:7562..9237+ (Macrocystis pyrifera P11B4 male)
GTGGTAGCGTCTTCCCCCCGCTACCTGCGAGTGGAGTACGAGGCGACAAG
AGCGATGCCGGCGTCTGTGGACGATGTCGAGTTCTACTTCACCCCCGGAG
ATGCCCTGCTACAGTTTCGTTGCGCGAGGAGGAGCGGTGTGACCGACCTG
GGAGCCGGCCGGAGACGCATGGACAGCATCCGACTCGCGCTGAAGTTCGA
ACCTGTGAGAAAAATTACGAGCGTCGAGCGCGGGAAGGAGAGAGGGCGGG
GCGCGGGGGGGGCGGGGGCGGGGGGTTGGGGCGGAAGGGGGGGGGTGTTC
TCATGACGTGCATGGCCGTACGTATGACCACAGAGTCTCGCATCCCTACA
ATACCGGGACGCGATATGTCGGATTTTCACCGACCAGGCAAGGCATTGAT
TTGCTTGCGCCAAGCGTGAAGCGCCGTGAGGTGTTCGGCAAGTCGCATGA
AGGGCGAGCTGCATCCTACAAATGGGGTGGGGATGTAGGGTTAAGTATTC
TTCAACACGTTCGTTGAAGCTGGGGCAAGGTCTATCTAGCCCTCTCACTA
AAAACCGCGAGGCGTGTGCGCTCGGTCACACCCTCTTACGCCTTCTTGAT
ATATAGCCACGCATGCTTGCGCTCGCGCTCTATACGATACCGGCCGCATT
TTTTTTTTATCGGGAGCGCTACGATAGCTCGCTCCGTTTTATGCCTTCCG
ACGGACGAAACAAAACAACTACAAAAACAAAATTCTAGCGAAGCGAAGCG
AGTTTTTTTTTTTCTTTTCTTTTCACGTACACGGTCTTGAAAATAGGGGA
CACATTTTGAGCAGGGTGAGCCCGGAGACCTACACATGTACCCGCGCCCT
CATAAAAAAATCTCCCAAAACAAAAACAAATTACTTTTTTTTTCTGTTTT
CGGGTATATGCCTTTTAGCCGGCGCACACATCAGTCAACGATGGTTCCAA
ATGTCCGCGAACTTTTCACGTGAAAAGAGCTACTCGTGCGTAACCGTAAG
ATTTTTTTGCGCTCGCGCTCCACGATCTCTTTTCCGTTCCCGTTTGCTGT
CGTCTTCGCAAGAGACGCGAGTAGCGGGCCCGCGCTGTCGTACATCGTTT
TCCCGAAACCGCCCGAATTAGTCATGGCAAATTTTAATTTCCGTTCGTTC
TCGCAGTTTACGACCACGGAGGACGACCTGATACGAGTTTCTCCGGGAAC
AATATTCGGTACGGACCCTTGCGCGAGCAGTCTGGTCCACCCACGGGTAC
CACTTGTACTGTTTTTTACTTGGCTACATACTGCGACCACATTCCTGCTG
CCGCTTGGCTGTCGTCTTGTTGTTTTGTTCCGCTGCGCTGCCTACATTTC
TGCTGACAAAGTACAGCTACCACATAATACCTCGCCGCCTTTTTTTTTTT
CATTTTTTTTTTCGAGAAATAAGATAGGTTTTCACTTCTGATTGCTCTCC
TCACACGAAAAAAACACTTGATTAAGATATGCATGTGCTCCCGCGGTTCC
TTTCCTTCCCTGCTCGTCCCTGCCCTCCCCCCCCCCTTTTTCTTTGCTTT
TCGTTTGCCTTTGTTTTCGGTTCCGCCTTACGCCCTGCGACAGATCCCGG
TCCTCCGAAATCGAAAGCGCGCTTTTTTTATCGGCGAGAGCCCCCTTGAT
TCTTTCGGGCCCTCCTTCGGAAAGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9919:7562..9237+

>mRNA_M-pyrifera_M_contig9919.22820.1 ID=mRNA_M-pyrifera_M_contig9919.22820.1|Name=mRNA_M-pyrifera_M_contig9919.22820.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig9919:7562..9237+ (Macrocystis pyrifera P11B4 male)
GTGGTAGCGTCTTCCCCCCGCTACCTGCGAGTGGAGTACGAGGCGACAAG
AGCGATGCCGGCGTCTGTGGACGATGTCGAGTTCTACTTCACCCCCGGAG
ATGCCCTGCTACAGTTTCGTTGCGCGAGGAGGAGCGGTGTGACCGACCTG
GGAGCCGGCCGGAGACGCATGGACAGCATCCGACTCGCGCTGAAGTTCGA
ACCTGTGGTAGCGTCTTCCCCCCGCTACCTGCGAGTGGAGTACGAGGCGA
CAAGAGCGATGCCGGCGTCTGTGGACGATGTCGAGTTCTACTTCACCCCC
GGAGATGCCCTGCTACAGTTTCGTTGCGCGAGGAGGAGCGGTGTGACCGA
CCTGGGAGCCGGCCGGAGACGCATGGACAGCATCCGACTCGCGCTGAAGT
TCGAACCTATCCCGGTCCTCCGAAATCGAAAGCGCGCTTTTTTTATCGGC
GAGAGCCCCCTTGATTCTTTCGGGCCCTCCTTCGGAAAGATCCCGGTCCT
CCGAAATCGAAAGCGCGCTTTTTTTATCGGCGAGAGCCCCCTTGATTCTT
TCGGGCCCTCCTTCGGAAAG
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