mRNA_M-pyrifera_M_contig99185.22818.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99185.22818.1
Unique NamemRNA_M-pyrifera_M_contig99185.22818.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A836CFR5_9STRA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFR5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 6.990e-43
Identity = 83/163 (50.92%), Postives = 99/163 (60.74%), Query Frame = 1
Query:   16 GEGAHCWGGSRFRKVLFVLVDALRYDFVR-------DG--------LHWFHNAMQKTR-RWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            G+   CW   R ++V++V++DALR+DF R       DG        L   H  +Q  R R L  G +    GG   LY F ADPPTVTMQRLKGL +G LPTFID R+NF SP+I EDN V Q    G   VF+GDDTW  LFPS F  +FPFPSFN +DLHT
Sbjct:   24 GQDDGCWLPRRHQRVIWVVIDALRFDFARWSDDGGIDGPTAFYHNKLPVLHEVLQAGRGRGLHSGNDTAAPGGRAMLYKFEADPPTVTMQRLKGLTTGALPTFIDFRNNFHSPQIEEDNWVQQAAALGMPLVFMGDDTWASLFPSQFQRAFPFPSFNTRDLHT 186          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: UPI001069E701 (GPI ethanolamine phosphate transferase 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI001069E701)

HSP 1 Score: 157 bits (397), Expect = 1.220e-41
Identity = 76/150 (50.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   31 CWGGSRFRKVLFVLVDALRYDFV--------RDGLHWFHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            CW  +RF+K + +++DALRYDF+        +D L  F N ++     L+         G GR++ F ADPPT TMQR+KGL +G LPTFID   NFAS EI EDN++ Q  R G+R VF+GDDTW+ LFP+HF+  +P+PSFNVKDLHT
Sbjct:   67 CWRTARFKKAVLIVIDALRYDFMLYNESLETKDALS-FQNKLEIINEVLKT------RSGHGRIFKFVADPPTTTMQRIKGLTTGSLPTFIDAGSNFASSEIHEDNIITQLKRRGKRIVFMGDDTWMGLFPNHFDRHYPYPSFNVKDLHT 209          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A834Z025_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Z025_9MAGN)

HSP 1 Score: 150 bits (378), Expect = 1.330e-41
Identity = 71/148 (47.97%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   28 HCWGGSRFRKVLFVLVDALRYDFVRDGLHW-----FHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            HCW      +++ +++DALR+DFV     +     + N +Q  ++     E         R++   ADPPT ++QRLKGL +GGLPTFIDV ++F +P IAEDNL+ Q VR+G+R + +GDDTWL LFP HF  S+PFPSFNVKDLHT
Sbjct:  130 HCWTAPTIDRLVIIVLDALRFDFVAPSTFFDETKPWMNKLQVLQKLASDKESS------ARIFKSVADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIAEDNLIHQLVRNGKRVLMMGDDTWLQLFPDHFGKSYPFPSFNVKDLHT 271          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A1Y3EMS1_9BILA (GPI ethanolamine phosphate transferase 3 (Fragment) n=2 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EMS1_9BILA)

HSP 1 Score: 148 bits (373), Expect = 7.770e-41
Identity = 70/145 (48.28%), Postives = 90/145 (62.07%), Query Frame = 1
Query:   31 CWGGSRFRKVLFVLVDALRYDFVRDGLHW---FHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            CW  S++++ + ++VDALRYDFV    H    +HN        L              L+ F ADPPT T+QRLK L +G LPTF+D   NFA   I EDNL+ Q +  GR+  F+GDDTW+ LFP+HFN S+PFPSF+VKDLHT
Sbjct:   55 CWVKSKYKRAILLVVDALRYDFVASPKHSKKIYHNKFSLVNELLSKKPSNS------MLFKFIADPPTTTLQRLKSLTTGSLPTFVDAGTNFAGTAIEEDNLIDQMINQGRKITFMGDDTWMALFPNHFNKSYPFPSFDVKDLHT 193          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: UPI0019635D7D (GPI ethanolamine phosphate transferase 3 n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI0019635D7D)

HSP 1 Score: 154 bits (389), Expect = 1.460e-40
Identity = 75/148 (50.68%), Postives = 98/148 (66.22%), Query Frame = 1
Query:   31 CWGGSRFRKVLFVLVDALRYDF------VRDGLHWFHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            CW   RF + + +++DAL+YDF      V+D  H F N ++    +++       S    RLY+F ADPPT TMQR+KG  +G LPTF+D+ +NFAS  I EDNL+ Q  ++G+R VF+GDDTW  LFP HF  SFPFPSFNVKDLHT
Sbjct:   68 CWSKPRFSRAVILIIDALKYDFAQFDSKVKDPQH-FQNKIKVFSEFIQS------SPANSRLYAFRADPPTTTMQRIKGFTTGTLPTFVDIGNNFASSAILEDNLISQMQKNGKRVVFMGDDTWDSLFPKHFQQSFPFPSFNVKDLHT 208          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A2K1IXL1_PHYPA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IXL1_PHYPA)

HSP 1 Score: 154 bits (389), Expect = 1.470e-40
Identity = 73/155 (47.10%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    1 RKGEEGEGAHCWGGSRFRKVLFVLVDALRYDFVRDGLHWFHNA---MQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            R+ ++   + CW     ++V+ +++DALR+DFV    H+   +   M K R   +  +E +GS    R++ F ADPPT T+QRLKGL +GGLPTF+D+ D+F +P I EDNL+ Q V+ G++   +GDDTW+ LFPSHF+V+ PF SFNVKDLHT
Sbjct:  104 RQSDDKPSSECWTKPAIKRVIIIVIDALRFDFVAPSSHFPGESQPWMDKLRVLQKLYKEENGSA---RIFKFVADPPTTTLQRLKGLTTGGLPTFVDIGDSFGAPAIVEDNLIYQLVQSGKKVRMMGDDTWMKLFPSHFSVAHPFDSFNVKDLHT 255          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A834YWD0_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YWD0_9MAGN)

HSP 1 Score: 154 bits (388), Expect = 1.980e-40
Identity = 72/148 (48.65%), Postives = 98/148 (66.22%), Query Frame = 1
Query:   28 HCWGGSRFRKVLFVLVDALRYDFVRDGLHW-----FHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            HCW      +++ +++DALR+DFV  G  +     + N +Q  ++     E         R++ F ADPPT ++QRLKGL +GGLPTFIDV ++F +P I EDNL+ Q VR+G+R + +GDDTWL LFP HF  S+PFPSFNVKDLHT
Sbjct:  168 HCWTAPAIDRLVIIVLDALRFDFVAPGTFFDETKPWMNKLQVLQKLASDKESS------ARIFKFVADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNLIHQLVRNGKRVLMMGDDTWLQLFPDHFGKSYPFPSFNVKDLHT 309          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A9THV7_PHYPA (GPI ethanolamine phosphate transferase 3 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9THV7_PHYPA)

HSP 1 Score: 152 bits (385), Expect = 2.860e-40
Identity = 72/147 (48.98%), Postives = 101/147 (68.71%), Query Frame = 1
Query:   25 AHCWGGSRFRKVLFVLVDALRYDFVRDGLHWFHNA---MQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            + CW     ++V+ +++DALR+DFV    H+   +   M K R   +  +E +GS    R++ F ADPPT T+QRLKGL +GGLPTF+D+ D+F +P I EDNL+ Q V+ G++   +GDDTW+ LFPSHF+V+ PF SFNVKDLHT
Sbjct:   55 SECWTKPAIKRVIIIVIDALRFDFVAPSSHFPGESQPWMDKLRVLQKLYKEENGSA---RIFKFVADPPTTTLQRLKGLTTGGLPTFVDIGDSFGAPAIVEDNLIYQLVQSGKKVRMMGDDTWMKLFPSHFSVAHPFDSFNVKDLHT 198          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A2I0HXN4_PUNGR (GPI ethanolamine phosphate transferase 3 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0HXN4_PUNGR)

HSP 1 Score: 144 bits (362), Expect = 1.670e-39
Identity = 67/146 (45.89%), Postives = 96/146 (65.75%), Query Frame = 1
Query:   31 CWGGSRFRKVLFVLVDALRYDFVRDGLHWFHNAMQKTRRWLEG----GEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            CW      +++ +++DA+R+DFV        +  ++ + W++      +   G G   R++   ADPPT ++QRLKGL +GGLPTFIDV ++F +P I EDNL+ Q V +G+R V +GDDTW+ LFP HF  S+PFPSFNVKDLHT
Sbjct:   54 CWTKPAIGRLVIIVLDAIRFDFVAPS-----SFFKEKKPWMDRLPVLQKLAFGEGSSARIFKAIADPPTTSLQRLKGLTTGGLPTFIDVGNSFGAPAIVEDNLIHQLVENGKRVVMMGDDTWVQLFPHHFRKSYPFPSFNVKDLHT 194          
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Match: A0A5S6QEN9_TRIMR (GPI ethanolamine phosphate transferase 3 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QEN9_TRIMR)

HSP 1 Score: 151 bits (381), Expect = 1.720e-39
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = 1
Query:   31 CWGGSRFRKVLFVLVDALRYDFVRDGLHW---FHNAMQKTRRWLEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFASPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDLHT 456
            CW  + +R+ + V+VDALRYDFV +  H    +HN   K +R L    +         L+ F ADPPT T+QRLKGL +G LPTF+D   NFA   I EDN++ Q +  GR+ VF+GDDTWL LFP  F  +FPFPSF+V DLHT
Sbjct:   51 CWVPASYRRSILVIVDALRYDFVAEQAHSKQVYHNRFPKVQRLLNNATQ------HAMLFKFVADPPTTTLQRLKGLTTGSLPTFVDAGSNFAGSAIEEDNIIDQLIAQGRKVVFMGDDTWLSLFPHQFTKAFPFPSFDVHDLHT 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99185.22818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFR5_9STRA6.990e-4350.92GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]
UPI001069E7011.220e-4150.67GPI ethanolamine phosphate transferase 3-like n=1 ... [more]
A0A834Z025_9MAGN1.330e-4147.97Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A1Y3EMS1_9BILA7.770e-4148.28GPI ethanolamine phosphate transferase 3 (Fragment... [more]
UPI0019635D7D1.460e-4050.68GPI ethanolamine phosphate transferase 3 n=1 Tax=P... [more]
A0A2K1IXL1_PHYPA1.470e-4047.10GPI ethanolamine phosphate transferase 3 n=2 Tax=P... [more]
A0A834YWD0_9MAGN1.980e-4048.65Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A9THV7_PHYPA2.860e-4048.98GPI ethanolamine phosphate transferase 3 n=1 Tax=P... [more]
A0A2I0HXN4_PUNGR1.670e-3945.89GPI ethanolamine phosphate transferase 3 n=1 Tax=P... [more]
A0A5S6QEN9_TRIMR1.720e-3949.66GPI ethanolamine phosphate transferase 3 n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99185contigM-pyrifera_M_contig99185:2..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score145.2
Seed ortholog evalue2.5e-32
Seed eggNOG ortholog6334.EFV56792
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phosphatidylinositol glycan anchor biosynthesis, class O
EggNOG OGs38C76@33154,3BG4T@33208,3D0JG@33213,40BX8@6231,COG1524@1,KOG2126@2759
COG Functional cat.T
Best tax levelNematoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.840651-CDS-M-pyrifera_M_contig99185:1..3571622816908.840651-CDS-M-pyrifera_M_contig99185:1..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99185 2..357 -
1692278249.3820086-CDS-M-pyrifera_M_contig99185:1..3571692278249.3820086-CDS-M-pyrifera_M_contig99185:1..357Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99185 2..357 -
1622816908.8590398-CDS-M-pyrifera_M_contig99185:489..5891622816908.8590398-CDS-M-pyrifera_M_contig99185:489..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99185 490..589 -
1692278249.3966606-CDS-M-pyrifera_M_contig99185:489..5891692278249.3966606-CDS-M-pyrifera_M_contig99185:489..589Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99185 490..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99185.22818.1prot_M-pyrifera_M_contig99185.22818.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99185 2..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99185.22818.1

>prot_M-pyrifera_M_contig99185.22818.1 ID=prot_M-pyrifera_M_contig99185.22818.1|Name=mRNA_M-pyrifera_M_contig99185.22818.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
RKGEEGEGAHCWGGSRFRKVLFVLVDALRYDFVRDGLHWFHNAMQKTRRW
LEGGEEGDGSGGVGRLYSFAADPPTVTMQRLKGLMSGGLPTFIDVRDNFA
SPEIAEDNLVVQGVRHGRRQVFLGDDTWLHLFPSHFNVSFPFPSFNVKDL
HT
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mRNA from alignment at M-pyrifera_M_contig99185:2..589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99185.22818.1 ID=mRNA_M-pyrifera_M_contig99185.22818.1|Name=mRNA_M-pyrifera_M_contig99185.22818.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig99185:2..589- (Macrocystis pyrifera P11B4 male)
AGGAAGGGGGAGGAAGGAGAAGGAGCACACTGTTGGGGAGGAAGCAGGTT TCGAAAAGTGTTGTTTGTGCTTGTGGATGCCTTGCGGTATGATTTCGTTC GTTCGATTCCTTGGGAGGGTGAATTTGGGGAGAAAGGTGGGATGGGGGAT GTGAGGTGGGAAGTTGGTGGAAGAATGGTGCGAAATGGGCGTGTTGACAT GAATCGCGTTGGAAGTGTCGGTCATGGGGCAGGGGATGGGTTGCATTGGT TCCACAATGCGATGCAGAAAACGAGGAGGTGGTTGGAAGGCGGTGAAGAA GGGGATGGATCGGGAGGAGTGGGGAGGTTGTACTCTTTTGCTGCGGATCC ACCTACGGTGACGATGCAGAGGCTGAAGGGTTTGATGAGTGGTGGGCTGC CCACATTTATCGATGTGCGTGACAACTTTGCGTCCCCAGAGATTGCTGAG GACAATTTGGTGGTGCAAGGAGTGCGTCATGGGCGTCGCCAAGTGTTTCT GGGAGATGACACGTGGCTGCACTTGTTCCCGTCACACTTCAACGTGTCCT TCCCTTTCCCATCCTTCAACGTCAAAGATTTGCACACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99185:2..589-

>mRNA_M-pyrifera_M_contig99185.22818.1 ID=mRNA_M-pyrifera_M_contig99185.22818.1|Name=mRNA_M-pyrifera_M_contig99185.22818.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig99185:2..589- (Macrocystis pyrifera P11B4 male)
AGGAAGGGGGAGGAAGGAGAAGGAGCACACTGTTGGGGAGGAAGCAGGTT
TCGAAAAGTGTTGTTTGTGCTTGTGGATGCCTTGCGGTATGATTTCGTTC
AGGAAGGGGGAGGAAGGAGAAGGAGCACACTGTTGGGGAGGAAGCAGGTT
TCGAAAAGTGTTGTTTGTGCTTGTGGATGCCTTGCGGTATGATTTCGTTC
GGGATGGGTTGCATTGGTTCCACAATGCGATGCAGAAAACGAGGAGGTGG
TTGGAAGGCGGTGAAGAAGGGGATGGATCGGGAGGAGTGGGGAGGTTGTA
CTCTTTTGCTGCGGATCCACCTACGGTGACGATGCAGAGGCTGAAGGGTT
TGATGAGTGGTGGGCTGCCCACATTTATCGATGTGCGTGACAACTTTGCG
TCCCCAGAGATTGCTGAGGACAATTTGGTGGTGCAAGGAGTGCGTCATGG
GCGTCGCCAAGTGTTTCTGGGAGATGACACGTGGCTGCACTTGTTCCCGT
CACACTTCAACGTGTCCTTCCCTTTCCCATCCTTCAACGTCAAAGATTTG
CACACTGGGATGGGTTGCATTGGTTCCACAATGCGATGCAGAAAACGAGG
AGGTGGTTGGAAGGCGGTGAAGAAGGGGATGGATCGGGAGGAGTGGGGAG
GTTGTACTCTTTTGCTGCGGATCCACCTACGGTGACGATGCAGAGGCTGA
AGGGTTTGATGAGTGGTGGGCTGCCCACATTTATCGATGTGCGTGACAAC
TTTGCGTCCCCAGAGATTGCTGAGGACAATTTGGTGGTGCAAGGAGTGCG
TCATGGGCGTCGCCAAGTGTTTCTGGGAGATGACACGTGGCTGCACTTGT
TCCCGTCACACTTCAACGTGTCCTTCCCTTTCCCATCCTTCAACGTCAAA
GATTTGCACACT
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