mRNA_M-pyrifera_M_contig99168.22813.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99168.22813.1
Unique NamemRNA_M-pyrifera_M_contig99168.22813.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A482R903_9EURY (DUF726 domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R903_9EURY)

HSP 1 Score: 127 bits (319), Expect = 1.600e-31
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   43 WFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLE 399
            WF+R   YGD Y L Y+P VL  L   L  +V++ V  K+V E+   T+LA LF A + PS    LLS+ID P+ALA+DR++KAG ALA+++ DGAHG RPVTL+G+ +GARV+F+ L 
Sbjct:  462 WFKRACTYGDLYALVYEPAVLKTLGMQLTNFVRASVTNKLVSEVLSKTLLATLFTAVALPSAVADLLSFIDTPWALAIDRSDKAGEALAKALLDGAHGHRPVTLVGYGMGARVIFAALS 580          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A812J550_9DINO (Tmco4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J550_9DINO)

HSP 1 Score: 122 bits (306), Expect = 1.160e-29
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   40 GWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVF-SCLE 399
            GW R  +  GD Y L ++P+VL  L   +EK+V S V  +   E+ + T L  L AAW++PS+  S LSYID P+ALA+DRA KAG ALA  I+   HG RPVTL+G+S+GARVVF +C E
Sbjct:  793 GWLRTAMSPGDAYALIWEPDVLMTLQHSVEKFVTSAVMSRATSEVLQQTALKALLAAWTYPSWCLSALSYIDSPWALALDRAAKAGAALADVIESRQHGQRPVTLLGYSIGARVVFEACAE 913          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A5A8DXL8_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DXL8_CAFRO)

HSP 1 Score: 122 bits (306), Expect = 1.170e-29
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   40 GWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVF-SCLE 399
            GW R  +  GD Y L ++P+VL  L   +EK+V S V  +   E+ + T L  L AAW++PS+  S LSYID P+ALA+DRA KAG ALA  I+   HG RPVTL+G+S+GARVVF +C E
Sbjct:  930 GWLRTAMSPGDAYALIWEPDVLMTLQHSVEKFVTSAVMSRATSEVLQQTALKALLAAWTYPSWCLSALSYIDSPWALALDRAAKAGAALADVIESRQHGQRPVTLLGYSIGARVVFEACAE 1050          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A5A8D4L3_CAFRO (Ion_trans domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4L3_CAFRO)

HSP 1 Score: 122 bits (306), Expect = 1.190e-29
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   40 GWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVF-SCLE 399
            GW R  +  GD Y L ++P+VL  L   +EK+V S V  +   E+ + T L  L AAW++PS+  S LSYID P+ALA+DRA KAG ALA  I+   HG RPVTL+G+S+GARVVF +C E
Sbjct: 1358 GWLRTAMSPGDAYALIWEPDVLMTLQHSVEKFVTSAVMSRATSEVLQQTALKALLAAWTYPSWCLSALSYIDSPWALALDRAAKAGAALADVIESRQHGQRPVTLLGYSIGARVVFEACAE 1478          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A5A8EJX0_CAFRO (Ion_trans domain-containing protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJX0_CAFRO)

HSP 1 Score: 122 bits (306), Expect = 1.200e-29
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   40 GWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVF-SCLE 399
            GW R  +  GD Y L ++P+VL  L   +EK+V S V  +   E+ + T L  L AAW++PS+  S LSYID P+ALA+DRA KAG ALA  I+   HG RPVTL+G+S+GARVVF +C E
Sbjct: 2342 GWLRTAMSPGDAYALIWEPDVLMTLQHSVEKFVTSAVMSRATSEVLQQTALKALLAAWTYPSWCLSALSYIDSPWALALDRAAKAGAALADVIESRQHGQRPVTLLGYSIGARVVFEACAE 2462          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A8B8LNK7_ABRPR (transmembrane and coiled-coil domain-containing protein 4-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8LNK7_ABRPR)

HSP 1 Score: 106 bits (264), Expect = 4.760e-24
Identity = 52/110 (47.27%), Postives = 77/110 (70.00%), Query Frame = 1
Query:   76 YVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL 405
            YVL+Y+ + L ALS  ++ W+ S +  +++ E A  T+L+ L AA +WP+   S    ID  +A+AVDR++KAG+ LA+ +  G HG+RPVTL+GFSLGARV+F CL+ L
Sbjct:  397 YVLQYESKNLIALSTAIQDWLTSKIVVELMKEGAMRTVLSTLVAALAWPATLVSTFDIIDNKWAIAVDRSDKAGKVLAEVLLKGLHGNRPVTLVGFSLGARVIFKCLQCL 506          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: D8RXW6_SELML (Uncharacterized protein n=6 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RXW6_SELML)

HSP 1 Score: 105 bits (263), Expect = 6.320e-24
Identity = 52/110 (47.27%), Postives = 75/110 (68.18%), Query Frame = 1
Query:   76 YVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL 405
            Y L ++ ++L A+S  ++ W+ + V  +++   A  T+L+GL AA +WPS   S   +ID  + +AVDR++KAG  LA  +  G HGSRPVTL+GFSLGARV+FSCLE L
Sbjct:  390 YSLRWETKILMAVSSAIQDWLTTAVAKELMKRGAMMTVLSGLLAALAWPSALLSATDFIDSRWTIAVDRSDKAGEILANCLLSGLHGSRPVTLLGFSLGARVIFSCLEHL 499          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: UPI001ADB3A93 (transmembrane and coiled-coil domain-containing protein 4-like isoform X2 n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADB3A93)

HSP 1 Score: 105 bits (263), Expect = 6.350e-24
Identity = 53/127 (41.73%), Postives = 83/127 (65.35%), Query Frame = 1
Query:   25 KEWNEGWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL 405
            K W EGW   L    + Y+L+++ + +  +S  +  W+ S    +++ E A  T+L G+ +A++WP+Y  S   +ID  +++A+DR++KAG+ LA+ +  G  GSRPVTLIGFSLGARVVF CL+ L
Sbjct:  373 KPW-EGWKTNL----ERYILQWESKHIIGVSTAIRDWLASRFAMELMREGAMQTVLCGIVSAFAWPAYVVSAADFIDSKWSIAIDRSDKAGKILAEVLLKGLQGSRPVTLIGFSLGARVVFKCLQEL 494          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A0D9XLH0_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9XLH0_9ORYZ)

HSP 1 Score: 105 bits (263), Expect = 6.510e-24
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   25 KEWNEGWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL 405
            K W EGW   L    + Y+L+++ + +  +S  +  W+ S    +++ E A  T+L+G+ +A++WP+Y  S   +ID  +++A+DR++KAG+ LA+ +  G  GSRPVTLIGFSLGARVVF CL+ L
Sbjct:  396 KPW-EGWKTNL----ERYILQWESKHIIGVSTAIRDWLASRFAMELMREGAMQTVLSGIVSAFAWPAYLVSAADFIDSKWSIAIDRSDKAGKMLAEVLLKGLQGSRPVTLIGFSLGARVVFKCLQEL 517          
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Match: A0A0D9XLG9_9ORYZ (Uncharacterized protein n=5 Tax=Oryzeae TaxID=147380 RepID=A0A0D9XLG9_9ORYZ)

HSP 1 Score: 105 bits (263), Expect = 6.530e-24
Identity = 53/127 (41.73%), Postives = 84/127 (66.14%), Query Frame = 1
Query:   25 KEWNEGWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFVRGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGRALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL 405
            K W EGW   L    + Y+L+++ + +  +S  +  W+ S    +++ E A  T+L+G+ +A++WP+Y  S   +ID  +++A+DR++KAG+ LA+ +  G  GSRPVTLIGFSLGARVVF CL+ L
Sbjct:  396 KPW-EGWKTNL----ERYILQWESKHIIGVSTAIRDWLASRFAMELMREGAMQTVLSGIVSAFAWPAYLVSAADFIDSKWSIAIDRSDKAGKMLAEVLLKGLQGSRPVTLIGFSLGARVVFKCLQEL 517          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99168.22813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482R903_9EURY1.600e-3151.26DUF726 domain-containing protein (Fragment) n=1 Ta... [more]
A0A812J550_9DINO1.160e-2951.24Tmco4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DXL8_CAFRO1.170e-2951.24Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8D4L3_CAFRO1.190e-2951.24Ion_trans domain-containing protein n=1 Tax=Cafete... [more]
A0A5A8EJX0_CAFRO1.200e-2951.24Ion_trans domain-containing protein n=4 Tax=Cafete... [more]
A0A8B8LNK7_ABRPR4.760e-2447.27transmembrane and coiled-coil domain-containing pr... [more]
D8RXW6_SELML6.320e-2447.27Uncharacterized protein n=6 Tax=Selaginella moelle... [more]
UPI001ADB3A936.350e-2441.73transmembrane and coiled-coil domain-containing pr... [more]
A0A0D9XLH0_9ORYZ6.510e-2441.73Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
A0A0D9XLG9_9ORYZ6.530e-2441.73Uncharacterized protein n=5 Tax=Oryzeae TaxID=1473... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99168contigM-pyrifera_M_contig99168:2..406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.6
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog40148.OGLUM10G15390.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGs37RRK@33090,3G96A@35493,3IDGP@38820,3KYDC@4447,KOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.5649822-CDS-M-pyrifera_M_contig99168:1..4061622816908.5649822-CDS-M-pyrifera_M_contig99168:1..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99168 2..406 -
1692278249.2180934-CDS-M-pyrifera_M_contig99168:1..4061692278249.2180934-CDS-M-pyrifera_M_contig99168:1..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99168 2..406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99168.22813.1prot_M-pyrifera_M_contig99168.22813.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99168 2..406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99168.22813.1

>prot_M-pyrifera_M_contig99168.22813.1 ID=prot_M-pyrifera_M_contig99168.22813.1|Name=mRNA_M-pyrifera_M_contig99168.22813.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MEEARAAGKEWNEGWFRRLVPYGDPYVLEYDPEVLAALSQYLEKWVKSFV
RGKVVGEIAKHTILAGLFAAWSWPSYATSLLSYIDEPFALAVDRAEKAGR
ALAQSIKDGAHGSRPVTLIGFSLGARVVFSCLEAL
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mRNA from alignment at M-pyrifera_M_contig99168:2..406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99168.22813.1 ID=mRNA_M-pyrifera_M_contig99168.22813.1|Name=mRNA_M-pyrifera_M_contig99168.22813.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig99168:2..406- (Macrocystis pyrifera P11B4 male)
ATGGAAGAAGCAAGAGCTGCTGGAAAAGAGTGGAATGAAGGCTGGTTTCG ACGTCTTGTTCCATATGGAGATCCATATGTACTGGAGTATGACCCTGAAG TGCTTGCAGCATTGTCACAGTACTTGGAGAAATGGGTCAAGAGCTTTGTG CGAGGAAAAGTTGTGGGGGAAATTGCCAAACACACAATCCTTGCAGGACT CTTTGCTGCTTGGTCATGGCCATCATATGCCACATCCTTGTTGTCCTACA TTGATGAACCCTTTGCTCTTGCTGTTGATCGTGCGGAAAAGGCAGGACGC GCACTAGCACAGAGTATCAAGGATGGAGCACATGGTTCACGCCCAGTGAC ACTCATCGGGTTTTCTCTTGGAGCACGTGTGGTGTTTTCGTGTCTGGAAG CACTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99168:2..406-

>mRNA_M-pyrifera_M_contig99168.22813.1 ID=mRNA_M-pyrifera_M_contig99168.22813.1|Name=mRNA_M-pyrifera_M_contig99168.22813.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig99168:2..406- (Macrocystis pyrifera P11B4 male)
ATGGAAGAAGCAAGAGCTGCTGGAAAAGAGTGGAATGAAGGCTGGTTTCG
ACGTCTTGTTCCATATGGAGATCCATATGTACTGGAGTATGACCCTGAAG
TGCTTGCAGCATTGTCACAGTACTTGGAGAAATGGGTCAAGAGCTTTGTG
CGAGGAAAAGTTGTGGGGGAAATTGCCAAACACACAATCCTTGCAGGACT
CTTTGCTGCTTGGTCATGGCCATCATATGCCACATCCTTGTTGTCCTACA
TTGATGAACCCTTTGCTCTTGCTGTTGATCGTGCGGAAAAGGCAGGACGC
GCACTAGCACAGAGTATCAAGGATGGAGCACATGGTTCACGCCCAGTGAC
ACTCATCGGGTTTTCTCTTGGAGCACGTGTGGTGTTTTCGTGTCTGGAAG
CACTTATGGAAGAAGCAAGAGCTGCTGGAAAAGAGTGGAATGAAGGCTGG
TTTCGACGTCTTGTTCCATATGGAGATCCATATGTACTGGAGTATGACCC
TGAAGTGCTTGCAGCATTGTCACAGTACTTGGAGAAATGGGTCAAGAGCT
TTGTGCGAGGAAAAGTTGTGGGGGAAATTGCCAAACACACAATCCTTGCA
GGACTCTTTGCTGCTTGGTCATGGCCATCATATGCCACATCCTTGTTGTC
CTACATTGATGAACCCTTTGCTCTTGCTGTTGATCGTGCGGAAAAGGCAG
GACGCGCACTAGCACAGAGTATCAAGGATGGAGCACATGGTTCACGCCCA
GTGACACTCATCGGGTTTTCTCTTGGAGCACGTGTGGTGTTTTCGTGTCT
GGAAGCACTT
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