mRNA_M-pyrifera_M_contig99159.22810.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99159.22810.1
Unique NamemRNA_M-pyrifera_M_contig99159.22810.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: L8HCN7_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCN7_ACACA)

HSP 1 Score: 102 bits (254), Expect = 1.930e-23
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 GFHRVLQQWTTVTEMYTCSHFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPES-PNLHRARAAAVCAAQPEDFSPSPLGKKLFGL 333
            G+H+ L+ W   T ++    FV V  +  +  H +KI  RKGS VVWSS +PHCNYPN    FRF QY++MFPA V+P +  ++   RA  +    P+ F PS LG+ +FGL
Sbjct:  265 GYHKFLETWAKQTPIFNKGSFVYVPKEDPLREHSQKITARKGSLVVWSSRMPHCNYPNTGPNFRFVQYLKMFPAVVMPPTNSSIWSVRAQVLRHRLPQGFEPSELGQLVFGL 376          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: A0A7S4K3M7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K3M7_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 4.970e-17
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 1
Query:    1 GFHRVLQQWTTVTEMYTCSHFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQPEDFSPSPLGKKLFGL 333
            GF ++L++W       +   F+ +     +      I  R+GS +VWSS LPHCNYPN S+ FRF QY++MFP+ ++ +       RA AV    P+D+  S +G +  G+
Sbjct:  285 GFQKILKEWAKQNRKASSMSFIQINKTDEMIEKATPITARRGSFIVWSSELPHCNYPNKSENFRFAQYIKMFPSKMVEDKEG----RAQAVKMRLPKDYVVSEVGMQTLGM 391          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: D2V6L9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V6L9_NAEGR)

HSP 1 Score: 79.0 bits (193), Expect = 8.430e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   61 FVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQPEDFSPSPLGKKLFGL 333
            F+ VR +  + +  +K+P+RKGS ++++S LPH N+PN SD+FR CQY++M P      S    R RA  V     +DF P+ +GK++FG 
Sbjct:  338 FLSVRKEDPLISQTQKVPVRKGSLIIFNSLLPHANFPNSSDRFRVCQYIKMVPKK---GSEEFQRLRATMVHDLMSQDFVPNEIGKEVFGF 425          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: A0A024UQ82_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQ82_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.150e-14
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   58 HFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQ--PEDFSPSPLGKKLFGL 333
            +F++V    ++     KIPM+ GS ++W+S LPH N+PND   FR  QYV+M P A     P +  ++      A+  P DF+P+PLG KLFGL
Sbjct:  244 NFIEVPEDDDMRREITKIPMKAGSLLIWNSQLPHGNFPNDGFNFRMVQYVKMIPTADTEFRPAMQLSK---FDRAEWFPSDFTPTPLGNKLFGL 334          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: A0A2D4C748_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C748_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 2.790e-13
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   58 HFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQPEDFSPSPLGKKLFGLPD 339
            +F++V     +    K+IPM+ GS ++W+S LPH N+PN    FR  QY++M PA    E     + +     A  P D+SPS LG+KLFGL D
Sbjct:  248 NFIEVPDDDPMRQEIKRIPMKAGSLLIWNSQLPHGNFPNTGFDFRMVQYIKMIPADDPREFRPAMQLQKFESSAWFPSDYSPSSLGRKLFGLDD 341          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: UPI001CFF0B11 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFF0B11)

HSP 1 Score: 73.9 bits (180), Expect = 4.970e-13
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 GFHRVLQQW----TTVTEMYTCSHFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCA-AQPEDFSPSPLGKKLFGL 333
            GFH   +++    T +     C+ F+ V    N+ +  +K+P + GS +VW++ LPH NYPN SD+FR CQY++M P      S +  + RA  +   A+   F+PS  GK++FG 
Sbjct:  309 GFHNHAKEYAEKLTAIRPGPKCT-FLSVFKGDNLLSQTQKVPAKAGSLIVWNTLLPHANYPNHSDRFRICQYIKMIPKK---GSESFQKLRATKIEEHARAYSFAPSETGKQVFGF 420          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: A0A6A5BG88_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BG88_NAEFO)

HSP 1 Score: 72.0 bits (175), Expect = 2.390e-12
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 GFHRVLQQW----TTVTEMYTCSHFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCA-AQPEDFSPSPLGKKLFGL 333
            GFH   Q++    +++     C+     RG  N+    +K+P + GS +VW++ LPH NYPN S++FR CQY++M P      S +  + RA+ +   A+   F PS  GK++FG 
Sbjct:  310 GFHNHAQEYVEKLSSIRPGPKCTFLSVFRGD-NLLTQTQKVPAKAGSLIVWNTLLPHANYPNHSERFRICQYIKMIPRK---GSESFQKLRASKIQEHARHFSFVPSETGKQVFGF 421          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: D2VY01_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VY01_NAEGR)

HSP 1 Score: 69.7 bits (169), Expect = 1.430e-11
Identity = 35/119 (29.41%), Postives = 64/119 (53.78%), Query Frame = 1
Query:    4 FHRVLQQWTTVTEMYTCSHFVDV------RGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPA---AVLPESPNLHRARAAAVCAAQPEDFSPSPLGKKLFGL 333
            F+++ ++WT +T     + +VD       R +  +     +IP++ G  ++W   +PH + PN+SD++R CQ+++MFP+        + +L   R     A +    +P+PLG KLFGL
Sbjct:  262 FNKIFKEWTQLTRNTLANKYVDSSFVVLSRQEKELFNKAVRIPLKAGDMLIWDICMPHGSAPNESDRYRLCQFLKMFPSYKPTTKQGNSSLEIRRKIIRKALERYRMNPTPLGNKLFGL 380          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: A0A7S3ZDQ0_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZDQ0_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 5.950e-11
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:   94 AHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQPEDFSPSPLGKKLFGL 333
            AH +  P+R+GS ++W S +PHC +PN S + R  QY++M P       P LH    A      P DF+P+ LGKK++G 
Sbjct:  100 AHVQTCPVREGSLLIWDSRIPHCTFPNKSQRGRMIQYIKMAPVDDKAIQP-LH----APYPGLLPPDFTPTELGKKIYGF 174          
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Match: K0S8J8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S8J8_THAOC)

HSP 1 Score: 67.8 bits (164), Expect = 6.530e-11
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   58 HFVDVRGKVNIGAHGKKIPMRKGSAVVWSSSLPHCNYPNDSDQ-FRFCQYVRMFPAAVLPE-SPNLHRARAAAV----CAAQPEDFSPSPLGKKLFGLPD 339
            +F++V  +  +  H KK+PM +GS ++W+S LPH N+PN S++ FR  QY++M P     E  P +  AR           + E F+PS LG+ LFGL D
Sbjct:  248 NFIEVPREDTMRRHVKKVPMPRGSLLIWNSMLPHGNFPNSSNEHFRMVQYIKMIPRNDPREFEPAMTSARFHESDWFPTEPEAEGFAPSKLGRCLFGLDD 347          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99159.22810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HCN7_ACACA1.930e-2343.75Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S4K3M7_9EUKA4.970e-1735.14Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
D2V6L9_NAEGR8.430e-1540.66Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A024UQ82_9STRA7.150e-1441.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2D4C748_PYTIN2.790e-1340.43Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
UPI001CFF0B114.970e-1335.34uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BG88_NAEFO2.390e-1234.48Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
D2VY01_NAEGR1.430e-1129.41Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A7S3ZDQ0_9EUKA5.950e-1140.00Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
K0S8J8_THAOC6.530e-1139.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99159contigM-pyrifera_M_contig99159:2..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue5.8e-13
Seed eggNOG ortholog5762.XP_002680209.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs28MMB@1,2QU52@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size351
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.3612702-CDS-M-pyrifera_M_contig99159:1..3521622816908.3612702-CDS-M-pyrifera_M_contig99159:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99159 2..352 +
1692278249.1070802-CDS-M-pyrifera_M_contig99159:1..3521692278249.1070802-CDS-M-pyrifera_M_contig99159:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99159 2..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99159.22810.1prot_M-pyrifera_M_contig99159.22810.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99159 2..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99159.22810.1

>prot_M-pyrifera_M_contig99159.22810.1 ID=prot_M-pyrifera_M_contig99159.22810.1|Name=mRNA_M-pyrifera_M_contig99159.22810.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
GFHRVLQQWTTVTEMYTCSHFVDVRGKVNIGAHGKKIPMRKGSAVVWSSS
LPHCNYPNDSDQFRFCQYVRMFPAAVLPESPNLHRARAAAVCAAQPEDFS
PSPLGKKLFGLPDDLA*
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mRNA from alignment at M-pyrifera_M_contig99159:2..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99159.22810.1 ID=mRNA_M-pyrifera_M_contig99159.22810.1|Name=mRNA_M-pyrifera_M_contig99159.22810.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig99159:2..352+ (Macrocystis pyrifera P11B4 male)
GGATTTCACCGTGTGCTTCAGCAATGGACAACAGTCACCGAGATGTACAC CTGCTCCCACTTCGTCGACGTCCGTGGCAAGGTGAATATTGGCGCCCATG GCAAGAAGATTCCCATGAGAAAGGGGAGTGCTGTCGTGTGGAGTTCTTCA CTGCCCCACTGTAATTATCCCAACGACAGCGACCAATTTCGCTTTTGCCA ATACGTGAGGATGTTCCCTGCAGCTGTGCTGCCAGAGAGCCCCAATTTGC ACCGTGCCAGAGCGGCAGCTGTGTGCGCTGCTCAGCCAGAAGATTTCTCA CCCAGCCCTCTGGGGAAGAAGTTGTTTGGGCTGCCAGACGATCTTGCGTA A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99159:2..352+

>mRNA_M-pyrifera_M_contig99159.22810.1 ID=mRNA_M-pyrifera_M_contig99159.22810.1|Name=mRNA_M-pyrifera_M_contig99159.22810.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig99159:2..352+ (Macrocystis pyrifera P11B4 male)
GGATTTCACCGTGTGCTTCAGCAATGGACAACAGTCACCGAGATGTACAC
CTGCTCCCACTTCGTCGACGTCCGTGGCAAGGTGAATATTGGCGCCCATG
GCAAGAAGATTCCCATGAGAAAGGGGAGTGCTGTCGTGTGGAGTTCTTCA
CTGCCCCACTGTAATTATCCCAACGACAGCGACCAATTTCGCTTTTGCCA
ATACGTGAGGATGTTCCCTGCAGCTGTGCTGCCAGAGAGCCCCAATTTGC
ACCGTGCCAGAGCGGCAGCTGTGTGCGCTGCTCAGCCAGAAGATTTCTCA
CCCAGCCCTCTGGGGAAGAAGTTGTTTGGGCTGCCAGACGATCTTGCGTA
AGGATTTCACCGTGTGCTTCAGCAATGGACAACAGTCACCGAGATGTACA
CCTGCTCCCACTTCGTCGACGTCCGTGGCAAGGTGAATATTGGCGCCCAT
GGCAAGAAGATTCCCATGAGAAAGGGGAGTGCTGTCGTGTGGAGTTCTTC
ACTGCCCCACTGTAATTATCCCAACGACAGCGACCAATTTCGCTTTTGCC
AATACGTGAGGATGTTCCCTGCAGCTGTGCTGCCAGAGAGCCCCAATTTG
CACCGTGCCAGAGCGGCAGCTGTGTGCGCTGCTCAGCCAGAAGATTTCTC
ACCCAGCCCTCTGGGGAAGAAGTTGTTTGGGCTGCCAGACGATCTTGCGT
AA
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