mRNA_M-pyrifera_M_contig99149.22807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99149.22807.1
Unique NamemRNA_M-pyrifera_M_contig99149.22807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A0A3N4V3F7_9MICO (Type IV pilus assembly protein PilM n=1 Tax=Frondihabitans sp. PhB153 TaxID=2485191 RepID=A0A3N4V3F7_9MICO)

HSP 1 Score: 58.5 bits (140), Expect = 2.470e-8
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSGG---KPRA--WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAI 210
            M+R +VGV +   +LR +E++G    KP    +GEVPL +GT+ +G V++  A + ALK LW  AG K+K+V +
Sbjct:    1 MSRNIVGVDIGTSSLRAVEIAGATSAKPTIVRYGEVPLSEGTVSRGEVLEPHAVAAALKTLWAEAGFKSKQVVL 74          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A0A3N1Q9M6_9MICO (Type IV pilus assembly protein PilM n=1 Tax=Frondihabitans sp. PhB188 TaxID=2485200 RepID=A0A3N1Q9M6_9MICO)

HSP 1 Score: 57.8 bits (138), Expect = 4.630e-8
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSGG---KPRA--WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAI 210
            M++ +VGV +   +LR +E+SG    KP    +GEVPLP G + +G V++    + ALK LW  +G K+K+V +
Sbjct:    1 MSKNIVGVDIGTSSLRAVEISGAASAKPTLVRYGEVPLPDGAVSRGEVLEPQTVAQALKTLWSQSGFKSKQVVL 74          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: UPI00131DAD29 (type IV pilus assembly protein PilM n=1 Tax=Leifsonia sp. AG29 TaxID=2598860 RepID=UPI00131DAD29)

HSP 1 Score: 54.7 bits (130), Expect = 5.740e-7
Identity = 29/74 (39.19%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSG-GKPRA----WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAI 210
            MA+ +VGV +  +T+R +EL   GKPR     + EVPL +G + +G V++       LK LW   G KTK+V +
Sbjct:    1 MAKTIVGVDIGSETIRAVELGDPGKPRPTLLRYAEVPLTEGAVSRGEVLEPNTVGMLLKELWNVGGFKTKKVVL 74          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A0A7L8D6B8_9MICO (Type IV pilus assembly protein PilM n=3 Tax=Microbacteriaceae TaxID=85023 RepID=A0A7L8D6B8_9MICO)

HSP 1 Score: 54.3 bits (129), Expect = 7.860e-7
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSGG---KP---RAWGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAIAV 216
            M  PVVGV +   TLR +EL      KP   RA  EVPLP+G++++G VI+    + A K LW   G +TK VA+ +
Sbjct:    1 MTGPVVGVDIGSTTLRAVELDDAAKAKPTIVRAH-EVPLPEGSVKRGDVIEVHTLASAFKRLWAAGGFRTKDVALGI 76          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: UPI0018C99C0D (type IV pilus assembly protein PilM n=1 Tax=Frigoribacterium sp. CG_9.8 TaxID=2787733 RepID=UPI0018C99C0D)

HSP 1 Score: 52.8 bits (125), Expect = 2.760e-6
Identity = 30/74 (40.54%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSG---GKPRA--WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAI 210
            MAR VVGV +   ++R +E+SG   GK     + E+PLP+G + +G V++  A    +K LW   G KTK VA+
Sbjct:    1 MARNVVGVDIGSTSVRAVEVSGASTGKTTLVRFLELPLPEGAVSRGEVLEPHAVGAIIKRLWSTGGFKTKNVAL 74          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: UPI001C639C6E (type IV pilus assembly protein PilM n=1 Tax=Salinibacterium sp. M195 TaxID=2583374 RepID=UPI001C639C6E)

HSP 1 Score: 51.2 bits (121), Expect = 9.680e-6
Identity = 27/76 (35.53%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSG-GKPRA----WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAIAV 216
            M + +VG+ +    +R +E+   G  R     +GEVPLP G +  G VID A  + A++ LW  +G+KT+ V + V
Sbjct:    1 MGKKLVGLDIGSTAIRAVEVENPGHQRPTILRFGEVPLPDGAVRAGEVIDAATVTAAIRKLWSSSGIKTRDVVLGV 76          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A0A3M8L103_9MICO (Type IV pilus assembly protein PilM n=1 Tax=Cryobacterium tepidiphilum TaxID=2486026 RepID=A0A3M8L103_9MICO)

HSP 1 Score: 51.2 bits (121), Expect = 9.750e-6
Identity = 25/73 (34.25%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSGGKPRA----WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAI 210
            M+  VVG+ +    +R +E++ GK +A    + +VPLP+G + +G V++    + ALK LW   G K+K V +
Sbjct:    1 MSANVVGIDIGTAGVRAVEVAAGKNKASVVRFHQVPLPEGAVNRGEVVEPNTVASALKQLWSTGGFKSKNVVL 73          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A0A4Y8KSX4_9MICO (Type IV pilus assembly protein PilM n=1 Tax=Cryobacterium psychrophilum TaxID=41988 RepID=A0A4Y8KSX4_9MICO)

HSP 1 Score: 50.8 bits (120), Expect = 1.330e-5
Identity = 27/76 (35.53%), Postives = 45/76 (59.21%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELS-GGK--PRA--WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAIAV 216
            M + +VG+ +    +R +EL+  GK  P+   + EVPLP+G + +G V++    + ALK LW   G K+KRV + +
Sbjct:    1 MTKNIVGIDIGTSGIRAVELADAGKASPKLVRYHEVPLPEGAVSRGEVVEPNTVATALKTLWSAGGFKSKRVVLGI 76          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: A4AFF7_9ACTN (Pilus-associated protein pilM n=2 Tax=Actinomycetia TaxID=1760 RepID=A4AFF7_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 1.810e-5
Identity = 25/76 (32.89%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSGGK-PRA----WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRVAIAV 216
            M + +VG+ +    +R +E+   + PR     +GEVPLP+G +  G VID+A  + +++ LW  +G++T+ V + V
Sbjct:    1 MGKKLVGLDIGSTAIRAVEVENPQQPRPTILRFGEVPLPEGAVRAGEVIDSATVTASIRKLWTQSGIRTRDVVLGV 76          
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Match: UPI0018CA1EF7 (Type IV pilus assembly protein PilM n=2 Tax=Cryobacterium sp. MP_M3 TaxID=2787716 RepID=UPI0018CA1EF7)

HSP 1 Score: 50.4 bits (119), Expect = 1.820e-5
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    4 MARPVVGVTLHDDTLRGIELSG-GKPRA----WGEVPLPQGTIEQGVVIDTAAFSDALKALWKPAGLKTKRV 204
            MA  VVG+ +   +LR +E+ G GK +     + EVPLP+G +  G VI+    + ALK LW   G K+K V
Sbjct:    1 MATSVVGIDIGSSSLRAVEVGGQGKSKPTLLRYFEVPLPEGAVNSGEVIEPNTVAAALKHLWTAGGFKSKDV 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99149.22807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A3N4V3F7_9MICO2.470e-841.89Type IV pilus assembly protein PilM n=1 Tax=Frondi... [more]
A0A3N1Q9M6_9MICO4.630e-839.19Type IV pilus assembly protein PilM n=1 Tax=Frondi... [more]
UPI00131DAD295.740e-739.19type IV pilus assembly protein PilM n=1 Tax=Leifso... [more]
A0A7L8D6B8_9MICO7.860e-742.86Type IV pilus assembly protein PilM n=3 Tax=Microb... [more]
UPI0018C99C0D2.760e-640.54type IV pilus assembly protein PilM n=1 Tax=Frigor... [more]
UPI001C639C6E9.680e-635.53type IV pilus assembly protein PilM n=1 Tax=Salini... [more]
A0A3M8L103_9MICO9.750e-634.25Type IV pilus assembly protein PilM n=1 Tax=Cryoba... [more]
A0A4Y8KSX4_9MICO1.330e-535.53Type IV pilus assembly protein PilM n=1 Tax=Cryoba... [more]
A4AFF7_9ACTN1.810e-532.89Pilus-associated protein pilM n=2 Tax=Actinomyceti... [more]
UPI0018CA1EF71.820e-540.28Type IV pilus assembly protein PilM n=2 Tax=Cryoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99149contigM-pyrifera_M_contig99149:14..229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.1949658-CDS-M-pyrifera_M_contig99149:13..2261622816908.1949658-CDS-M-pyrifera_M_contig99149:13..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99149 14..226 -
1692278248.9895625-CDS-M-pyrifera_M_contig99149:13..2261692278248.9895625-CDS-M-pyrifera_M_contig99149:13..226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99149 14..226 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.2073913-UTR-M-pyrifera_M_contig99149:226..2291622816908.2073913-UTR-M-pyrifera_M_contig99149:226..229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99149 227..229 -
1692278249.0098305-UTR-M-pyrifera_M_contig99149:226..2291692278249.0098305-UTR-M-pyrifera_M_contig99149:226..229Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99149 227..229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99149.22807.1prot_M-pyrifera_M_contig99149.22807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99149 14..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99149.22807.1

>prot_M-pyrifera_M_contig99149.22807.1 ID=prot_M-pyrifera_M_contig99149.22807.1|Name=mRNA_M-pyrifera_M_contig99149.22807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MARPVVGVTLHDDTLRGIELSGGKPRAWGEVPLPQGTIEQGVVIDTAAFS
DALKALWKPAGLKTKRVAIAV
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mRNA from alignment at M-pyrifera_M_contig99149:14..229-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99149.22807.1 ID=mRNA_M-pyrifera_M_contig99149.22807.1|Name=mRNA_M-pyrifera_M_contig99149.22807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig99149:14..229- (Macrocystis pyrifera P11B4 male)
CTGATGGCTCGACCAGTAGTGGGTGTGACCCTTCATGACGACACCCTGCG TGGCATCGAGCTCTCGGGTGGCAAGCCCCGCGCCTGGGGTGAAGTCCCGC TGCCCCAGGGGACGATCGAACAGGGCGTCGTCATCGACACTGCGGCCTTC TCCGATGCGCTGAAGGCGCTCTGGAAGCCGGCCGGGCTCAAGACCAAACG GGTCGCCATCGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99149:14..229-

>mRNA_M-pyrifera_M_contig99149.22807.1 ID=mRNA_M-pyrifera_M_contig99149.22807.1|Name=mRNA_M-pyrifera_M_contig99149.22807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig99149:14..229- (Macrocystis pyrifera P11B4 male)
ATGGCTCGACCAGTAGTGGGTGTGACCCTTCATGACGACACCCTGCGTGG
CATCGAGCTCTCGGGTGGCAAGCCCCGCGCCTGGGGTGAAGTCCCGCTGC
CCCAGGGGACGATCGAACAGGGCGTCGTCATCGACACTGCGGCCTTCTCC
GATGCGCTGAAGGCGCTCTGGAAGCCGGCCGGGCTCAAGACCAAACGGGT
CGCCATCGCCGTCATGGCTCGACCAGTAGTGGGTGTGACCCTTCATGACG
ACACCCTGCGTGGCATCGAGCTCTCGGGTGGCAAGCCCCGCGCCTGGGGT
GAAGTCCCGCTGCCCCAGGGGACGATCGAACAGGGCGTCGTCATCGACAC
TGCGGCCTTCTCCGATGCGCTGAAGGCGCTCTGGAAGCCGGCCGGGCTCA
AGACCAAACGGGTCGCCATCGCCGTC
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