mRNA_M-pyrifera_M_contig99105.22805.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99105.22805.1
Unique NamemRNA_M-pyrifera_M_contig99105.22805.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: UPI000E1DE079 (uncharacterized protein LOC101265259 isoform X3 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI000E1DE079)

HSP 1 Score: 54.3 bits (129), Expect = 5.170e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 FPSILFQPFFAAE--RKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            FP  L Q F   +  R+AEAS++R  +TDR+PVIVE+A+RSD+P I K K
Sbjct:   41 FPPFLVQSFSTKKEKRRAEASRIREKYTDRIPVIVEKAERSDIPNIDKKK 90          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: UPI000532B144 (autophagy-related protein 8f isoform X2 n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=UPI000532B144)

HSP 1 Score: 54.3 bits (129), Expect = 9.590e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    4 FPSILFQPFFAAE--RKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            FP  L Q F   +  R+AEAS++R  +TDR+PVIVE+A+RSD+P I K K
Sbjct:   41 FPPFLVQSFSTKKEKRRAEASRIREKYTDRIPVIVEKAERSDIPNIDKKK 90          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: A0A445HN73_GLYSO (Autophagy-related protein (Fragment) n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445HN73_GLYSO)

HSP 1 Score: 53.5 bits (127), Expect = 1.980e-7
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   10 SILFQPFFAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            S L++ F    R+AEAS++R  + DR+PVIVERA++SDVPEI K K
Sbjct:   47 SNLWKHFMPERRQAEASRIREKYPDRIPVIVERAEKSDVPEIDKKK 92          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: A0A2P6S294_ROSCH (Autophagy-related protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S294_ROSCH)

HSP 1 Score: 52.0 bits (123), Expect = 3.650e-7
Identity = 23/36 (63.89%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   40 ERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            +R+AEA+++R  + DRVPVIVERA++SDVP+I KNK
Sbjct:   14 QREAEAARIRENYPDRVPVIVERAEKSDVPDIEKNK 49          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: UPI00080A57AD (autophagy-related protein 8f isoform X3 n=2 Tax=Vigna TaxID=3913 RepID=UPI00080A57AD)

HSP 1 Score: 51.2 bits (121), Expect = 5.270e-7
Identity = 22/40 (55.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   28 FFAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            FF  +R+AEA+++R  + DR+PVIVE+A+RSD+P I K K
Sbjct:   14 FFPEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKK 53          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: A0A6N2B6J8_SOLCI (Autophagy-related protein n=2 Tax=asterids TaxID=71274 RepID=A0A6N2B6J8_SOLCI)

HSP 1 Score: 51.2 bits (121), Expect = 7.290e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   10 SILFQPFFAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            S+  Q     +R+AEAS++R  +TDR+PVIVE+A+RSD+P I K K
Sbjct:    4 SLFKQEHDLEKRRAEASRIREKYTDRIPVIVEKAERSDIPNIDKKK 49          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: M1AXH6_SOLTU (Autophagy-related protein n=2 Tax=Solanum TaxID=4107 RepID=M1AXH6_SOLTU)

HSP 1 Score: 50.8 bits (120), Expect = 1.090e-6
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 ERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            +R+AEAS++R  +TDR+PVIVE+A+RSD+P I K K
Sbjct:   14 KRRAEASRIREKYTDRIPVIVEKAERSDIPNIDKKK 49          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: A0A4S4E0D2_CAMSI (Autophagy-related protein n=5 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4E0D2_CAMSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.150e-6
Identity = 24/46 (52.17%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   10 SILFQPFFAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            +I+FQ  F+ +R+AEA+++R  + DR+PVIVE+A+RSD+P I K K
Sbjct:    9 NIVFQ--FSDKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKK 52          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: I1LRP9_SOYBN (Autophagy-related protein n=3 Tax=fabids TaxID=91835 RepID=I1LRP9_SOYBN)

HSP 1 Score: 50.1 bits (118), Expect = 1.230e-6
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   43 RKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            R+AEAS++R  + DR+PVIVERA++SDVPEI K K
Sbjct:   15 RQAEASRIREKYPDRIPVIVERAEKSDVPEIDKKK 49          
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Match: UPI001BF20C2C (Uncharacterized protein n=4 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF20C2C)

HSP 1 Score: 50.8 bits (120), Expect = 1.240e-6
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   31 FAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK 147
            FA +R+AEA+++R  + DR+PVIVE+A+RSD+P I K K
Sbjct:   23 FAEQRRAEAARIRKKYADRIPVIVEKAERSDIPYIDKKK 61          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99105.22805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E1DE0795.170e-854.00uncharacterized protein LOC101265259 isoform X3 n=... [more]
UPI000532B1449.590e-854.00autophagy-related protein 8f isoform X2 n=1 Tax=So... [more]
A0A445HN73_GLYSO1.980e-756.52Autophagy-related protein (Fragment) n=2 Tax=Glyci... [more]
A0A2P6S294_ROSCH3.650e-763.89Autophagy-related protein n=1 Tax=Rosa chinensis T... [more]
UPI00080A57AD5.270e-755.00autophagy-related protein 8f isoform X3 n=2 Tax=Vi... [more]
A0A6N2B6J8_SOLCI7.290e-752.17Autophagy-related protein n=2 Tax=asterids TaxID=7... [more]
M1AXH6_SOLTU1.090e-661.11Autophagy-related protein n=2 Tax=Solanum TaxID=41... [more]
A0A4S4E0D2_CAMSI1.150e-652.17Autophagy-related protein n=5 Tax=Camellia sinensi... [more]
I1LRP9_SOYBN1.230e-665.71Autophagy-related protein n=3 Tax=fabids TaxID=918... [more]
UPI001BF20C2C1.240e-656.41Uncharacterized protein n=4 Tax=Carya illinoinensi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99105contigM-pyrifera_M_contig99105:419..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.1223722-CDS-M-pyrifera_M_contig99105:418..5651622816908.1223722-CDS-M-pyrifera_M_contig99105:418..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99105 419..565 +
1692278248.9583483-CDS-M-pyrifera_M_contig99105:418..5651692278248.9583483-CDS-M-pyrifera_M_contig99105:418..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99105 419..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99105.22805.1prot_M-pyrifera_M_contig99105.22805.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99105 419..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99105.22805.1

>prot_M-pyrifera_M_contig99105.22805.1 ID=prot_M-pyrifera_M_contig99105.22805.1|Name=mRNA_M-pyrifera_M_contig99105.22805.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
LFPSILFQPFFAAERKAEASKVRSGFTDRVPVIVERAKRSDVPEISKNK
back to top

mRNA from alignment at M-pyrifera_M_contig99105:419..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99105.22805.1 ID=mRNA_M-pyrifera_M_contig99105.22805.1|Name=mRNA_M-pyrifera_M_contig99105.22805.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig99105:419..565+ (Macrocystis pyrifera P11B4 male)
CTATTCCCGTCCATCCTCTTCCAACCCTTTTTTGCAGCGGAGCGAAAGGC GGAGGCGAGTAAAGTCAGGTCGGGCTTCACGGACCGGGTGCCCGTCATCG TCGAGCGAGCCAAGCGCTCTGACGTGCCTGAAATTTCCAAGAACAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99105:419..565+

>mRNA_M-pyrifera_M_contig99105.22805.1 ID=mRNA_M-pyrifera_M_contig99105.22805.1|Name=mRNA_M-pyrifera_M_contig99105.22805.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig99105:419..565+ (Macrocystis pyrifera P11B4 male)
CTATTCCCGTCCATCCTCTTCCAACCCTTTTTTGCAGCGGAGCGAAAGGC
GGAGGCGAGTAAAGTCAGGTCGGGCTTCACGGACCGGGTGCCCGTCATCG
TCGAGCGAGCCAAGCGCTCTGACGTGCCTGAAATTTCCAAGAACAAGCTA
TTCCCGTCCATCCTCTTCCAACCCTTTTTTGCAGCGGAGCGAAAGGCGGA
GGCGAGTAAAGTCAGGTCGGGCTTCACGGACCGGGTGCCCGTCATCGTCG
AGCGAGCCAAGCGCTCTGACGTGCCTGAAATTTCCAAGAACAAG
back to top