mRNA_M-pyrifera_M_contig9910.22801.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9910.22801.1
Unique NamemRNA_M-pyrifera_M_contig9910.22801.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9910.22801.1 vs. uniprot
Match: D8LL20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL20_ECTSI)

HSP 1 Score: 392 bits (1007), Expect = 1.500e-125
Identity = 226/389 (58.10%), Postives = 256/389 (65.81%), Query Frame = 1 
Query:   58 MQAVLSSASLHPPPGASLDAVASPATLGGXXXXASGLAPDLMAVSEKLDLVVLCAGNTIRAVNLAEPSDGGSYSXXXXXXXXXXXXXXXXXXXXXXXHQHDPFREVSFAADCAPRPGDDTIPSDSIPAKTPIKGLEFSPSGHSLLVWGESYVAVARLPRSASRGGLLGGPNPTS------------RDDGGATPVRGDGGRRG--GDPGARWKWTLVDMSGYVVDVRRQRVVQAVWHPASDSCVTLLTVGRED------GGGGGAFVMLHVPGRERPEQVVQIPDGPSASPPVAIAHGRSAGWQRYAIWIARRDGSVAALCPVVPENAKIDSEELLDLWSVTADTLVAARWER--HSGNAVQNQSALDEEIARLEQQQAWLRDTFGNVF 1158
            MQ VL SASLHPP                X   AS +A +LMAVS  L L +LC  NTIRAV+L +  D  +++                        + DPF  VSF+ADCAPRPGDD IPSDSIP KTPIKGL+FSPSGHSLL+WGESYVAVARLPRSA      GG NPT             RD   +   RG  G  G  GD  ARWKWTLVDMSGY VDV RQR+V A WHPASD CVTLLT G++D      G G  AFVMLHVPGRERPEQV+ IPDGP+ SPPVA+AH    GWQR+ IWIA++DGSV ALCPVVP+ AK+DSEEL+ LWS T DTLVAARWE+   SG   Q QSALDEE+ARLEQQ+ WLR+TF +VF
Sbjct:    1 MQLVLRSASLHPPXXXXXXXX----XXXXXGATASVVASELMAVSAGLHLAMLCRSNTIRAVSLMDVPDAAAHAPSSGSIRTPSSAQQR--------REDDPFHAVSFSADCAPRPGDDVIPSDSIPPKTPIKGLQFSPSGHSLLIWGESYVAVARLPRSAR---TTGGSNPTHGVPPATPFLSPPRDLTASGRRRGTAGGDGTSGDKSARWKWTLVDMSGYAVDVMRQRIVHAAWHPASDGCVTLLTAGKDDVYVAVAGVGAKAFVMLHVPGRERPEQVLPIPDGPNVSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCPVVPQTAKVDSEELVGLWSATCDTLVAARWEQAHQSGTDSQQQSALDEEVARLEQQKGWLRETFSHVF 374
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9910.22801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL20_ECTSI1.500e-12558.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9910contigM-pyrifera_M_contig9910:285..3631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1158
Cds size1158
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9910.22801.1prot_M-pyrifera_M_contig9910.22801.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9910 285..3631 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.9314573-CDS-M-pyrifera_M_contig9910:284..3591622816907.9314573-CDS-M-pyrifera_M_contig9910:284..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 285..359 -
1692278248.8129435-CDS-M-pyrifera_M_contig9910:284..3591692278248.8129435-CDS-M-pyrifera_M_contig9910:284..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 285..359 -
1622816907.943407-CDS-M-pyrifera_M_contig9910:1171..12521622816907.943407-CDS-M-pyrifera_M_contig9910:1171..1252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 1172..1252 -
1692278248.827144-CDS-M-pyrifera_M_contig9910:1171..12521692278248.827144-CDS-M-pyrifera_M_contig9910:1171..1252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 1172..1252 -
1622816907.9573057-CDS-M-pyrifera_M_contig9910:2118..22861622816907.9573057-CDS-M-pyrifera_M_contig9910:2118..2286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 2119..2286 -
1692278248.8394318-CDS-M-pyrifera_M_contig9910:2118..22861692278248.8394318-CDS-M-pyrifera_M_contig9910:2118..2286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 2119..2286 -
1622816907.968867-CDS-M-pyrifera_M_contig9910:2797..36311622816907.968867-CDS-M-pyrifera_M_contig9910:2797..3631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 2798..3631 -
1692278248.8601358-CDS-M-pyrifera_M_contig9910:2797..36311692278248.8601358-CDS-M-pyrifera_M_contig9910:2797..3631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9910 2798..3631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9910.22801.1

>prot_M-pyrifera_M_contig9910.22801.1 ID=prot_M-pyrifera_M_contig9910.22801.1|Name=mRNA_M-pyrifera_M_contig9910.22801.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=386bp
MAMYTTPVARRTPSAAATHMQAVLSSASLHPPPGASLDAVASPATLGGGG
GGASGLAPDLMAVSEKLDLVVLCAGNTIRAVNLAEPSDGGSYSSSNNNNN
GSRNSGGTAAQRQQQQHQHDPFREVSFAADCAPRPGDDTIPSDSIPAKTP
IKGLEFSPSGHSLLVWGESYVAVARLPRSASRGGLLGGPNPTSRDDGGAT
PVRGDGGRRGGDPGARWKWTLVDMSGYVVDVRRQRVVQAVWHPASDSCVT
LLTVGREDGGGGGAFVMLHVPGRERPEQVVQIPDGPSASPPVAIAHGRSA
GWQRYAIWIARRDGSVAALCPVVPENAKIDSEELLDLWSVTADTLVAARW
ERHSGNAVQNQSALDEEIARLEQQQAWLRDTFGNVF
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mRNA from alignment at M-pyrifera_M_contig9910:285..3631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9910.22801.1 ID=mRNA_M-pyrifera_M_contig9910.22801.1|Name=mRNA_M-pyrifera_M_contig9910.22801.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3347bp|location=Sequence derived from alignment at M-pyrifera_M_contig9910:285..3631- (Macrocystis pyrifera P11B4 male)
ATGGCAATGTATACCACCCCGGTGGCTCGCCGGACGCCGTCCGCAGCAGC
TACACACATGCAGGCCGTGCTAAGCAGCGCGTCCTTGCACCCACCTCCTG
GTGCCAGCCTCGACGCCGTGGCCTCCCCAGCCACCCTCGGCGGCGGCGGC
GGCGGCGCGAGCGGCTTGGCTCCCGATCTCATGGCCGTGAGCGAAAAGCT
CGATCTTGTCGTTCTGTGCGCCGGCAATACGATACGCGCGGTCAACCTCG
CCGAGCCATCCGACGGTGGTAGCTACAGCAGCAGCAACAACAACAACAAC
GGCAGCAGGAACAGCGGAGGAACAGCTGCACAGCGGCAGCAGCAGCAGCA
CCAACACGACCCCTTCCGTGAAGTATCTTTCGCGGCAGACTGCGCTCCCA
GGCCCGGGGACGACACCATCCCCAGCGACTCCATCCCCGCCAAGACGCCC
ATAAAGGGGCTGGAGTTTTCCCCCTCCGGCCACAGCCTGCTGGTCTGGGG
CGAGAGCTACGTCGCGGTTGCCCGCCTTCCGCGATCTGCTTCGCGGGGAG
GACTGCTGGGCGGCCCCAACCCCACGTCTCGGGACGACGGCGGAGCGACC
CCGGTCAGGGGGGATGGCGGTCGGCGAGGAGGCGACCCGGGCGCTCGGTG
GAAGTGGACGCTGGTGGACATGTCGGGGTACGTGGTGGACGTGAGGCGGC
AGAGGGTGGTGCAAGCCGTATGGCACCCGGCGAGCGATAGCTGTGTGACG
CTGCTTACGGTTGGGAGGGAAGACGGCGGCGGTGGCGGGGCGTTCGTGAT
GCTGCACGTCCCTGGGCGCGAGCGGCCGGAGCAGGTATGATACTACTGTA
TTCTTGCGAGGGTATTAGGGAAGAGAAAAAGGGGTTGTGTGGAGTGGTGG
TCATAATTTGTTGTTCTTGGCGATGGTGGTGGTGGTGGTGGTGGTGGTGG
TGGTTGCGAGACGATGTCATGTACGGATATATATAGGTGGGTAGAGCTGC
AGGTTGTGGGCGTGTTGGCGCTACGTCTACGTTAGAGTGTTAATACCAGG
TACCAGGTACCTAAAAGTAATAGGAGATGCTATTAATATATACCAATGGT
ACTGGTAAGCGTTGCACCAGTACTACTGCAGGTGTCGACTTCAGTGCGTG
GCCTGCTGGAGCTTATGTCAAAGAGAAATAAATGATGTCAGCGCCACGAA
ACAGTCGGTATAGGTATCCTAACAGGCGTACTGCACGCGTCGGCTCTCCC
TTGTCCTGGCGTTTCTCTCTGCTGTCCCTCCCACGGTCATACCTCCCCCA
TTTTTACCCTGCTTGTTCGCTTTTCTGTGTGACTTTCTTTTTCAGGTGGT
ACAAATCCCCGACGGACCGAGCGCATCGCCGCCGGTCGCCATCGCCCACG
GGCGCAGCGCGGGGTGGCAGCGCTACGCCATTTGGATCGCTAGGAGGGAC
GGATCGGTGGCTGCCCTGTGCCCAGTCGTTCCAGAAAACGCCAAGATCGA
CTCGGAAGAACTGGTGAGCGGGCCGCGCCGAAATAACGACAAGTTTTGCT
TGTGATGTGCTCTTGATGATCTTAAGGCGTGTTACTGTACGGGGAGAGAG
AGGGAAGAGGGTTACCAACATGCATCAATGGTTGTCGGTTTCGCCCCTCC
CCCGTTGGGTCGGAGTGGTCTGGCCTGCGTGATCTATTGGCACTGACGGC
GTGGAGGGTCTCTCTCTCTCTCTCTCGGTCGCGCGCGCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCGGTGCTCGGTCATCTGAGAAGGAGACGAGAGC
ACGCGGGGGTGTTGAGAGTGCAAGCTATTAACAGGTTGGTTTGGAACGTG
TTCCTTGGTATTTGCCCGTGATGTAGCGTGGCTGGCGAGGGTGACAACCA
TTTCATGCGCTCTGGCGTGACTTTGGGACGTGTCTGTCTGTTCTGAGCGC
TGCCGAGCCGAGCAGAGCAGAGTTGCGATGTGTCGTTTTTTCGCCAATCC
GCCTAACCCTATCTAGGGTACCCGGGTACCCAACCTGGTTGTTTTGGTCG
TACTCGGGTAGATACCCGGGTGCCTCCAGAGAATATATATATACTCTGGG
GTGCCGGGGTACCTAACCTGGTTATTTTGGTCGTATTCGGGTAAGGTACC
CGGGTACCTCCTGAGTATATACTCTATTAAACATCAACATATACCAGGTA
TATACTCTTGGGCACAGCTATGGCAGCTACAGCAGCAGCATCTACCATCT
GATGTACGGCAAATACGGGTCGTCTTGCAATCTCTTTTGTCAACACCTCA
CCCCCCGTTCCCGCCGCAAAACTCCTCCCCTCCCGCGCGCTCGCTCACGC
GTGTGTGTGTGTTTTGTTCGATCGTGCAGCTGGATTTGTGGTCGGTGACG
GCGGACACATTGGTCGCCGCGAGGTGGGAACGTCACTCCGGCAACGCGGT
GCAGAATCAGGTTAGGACGCGCTCGCTCGAGGCGTGCCGTGACAGGGGAA
GCGTGTGGGAAGAGGGAAAGCCAAGGAGTCTGCTGTTTGCTGACCCCGAT
TTGGGATTGGCTGTTGCTGACGCCGATTTGGAGTCTGCTACTCCTGACCC
CGATTTTGAAGGGCCCCCTTTGGCGGTTTTTCATGCTGTGGTTTGTGCTG
CGTCTGGAGGTTTCGGTGGGGCAGGGGACGTGACGCGTGGACGGAGCTAT
TAATAGACTGTTGGATGGGATCGCTTGCCTATTCGGATTTTCTCGTGCTT
TTCCGAGCTCCTAAGCAATGCCGCTGGCTTTTGCGAGTGGAAATGTGTTT
CGTATGTACGTGCCCTCGTGAAGTCTACTGTGGCTGTCTCTTTTTGTTTT
GTGAGAGGCGCCGGCCTAAGTTTGGAACCGCGGTTTCAGTTTGTGGCGGA
GAGCCAAGACGTGAGGTACGGGAGTAGTAGATGTCGCGTCTATCGTCGCC
ACTACCGCCAACATTGCCATTTTAGACAGCGTTATCCGCGATTGTTATTT
GCGCGTTTGCTGTCCAAAGTCCACTGTGCTTGTCGGCACAAGCTTTCACT
GCTGTGTTTGTACATCCTCTGAATATACGGCCGCACGTACGCCCGGTAGG
TGCCCTAATTTTAGTTTCCGATATCGCCCTGGCCCTGCCTGGCCTTACCC
CAATCGGTGAGCCCCATTTTTTTACTGCCAATATCTCCTGCCCCTGGTCG
TGACCACCCCGGTCGGTGCGCTAATATTTTGACTTCTAATATCGCCTCGC
CCTGCGCCCGTCGCTGACACAGAGCGCCTTGGACGAAGAGATAGCACGCC
TGGAGCAGCAGCAGGCGTGGCTGAGGGACACGTTCGGCAACGTCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9910:285..3631-

>mRNA_M-pyrifera_M_contig9910.22801.1 ID=mRNA_M-pyrifera_M_contig9910.22801.1|Name=mRNA_M-pyrifera_M_contig9910.22801.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2316bp|location=Sequence derived from alignment at M-pyrifera_M_contig9910:285..3631- (Macrocystis pyrifera P11B4 male)
ATGGCAATGTATACCACCCCGGTGGCTCGCCGGACGCCGTCCGCAGCAGC
TACACACATGCAGGCCGTGCTAAGCAGCGCGTCCTTGCACCCACCTCCTG
GTGCCAGCCTCGACGCCGTGGCCTCCCCAGCCACCCTCGGCGGCGGCGGC
GGCGGCGCGAGCGGCTTGGCTCCCGATCTCATGGCCGTGAGCGAAAAGCT
CGATCTTGTCGTTCTGTGCGCCGGCAATACGATACGCGCGGTCAACCTCG
CCGAGCCATCCGACGGTGGTAGCTACAGCAGCAGCAACAACAACAACAAC
GGCAGCAGGAACAGCGGAGGAACAGCTGCACAGCGGCAGCAGCAGCAGCA
CCAACACGACCCCTTCCGTGAAGTATCTTTCGCGGCAGACTGCGCTCCCA
GGCCCGGGGACGACACCATCCCCAGCGACTCCATCCCCGCCAAGACGCCC
ATAAAGGGGCTGGAGTTTTCCCCCTCCGGCCACAGCCTGCTGGTCTGGGG
CGAGAGCTACGTCGCGGTTGCCCGCCTTCCGCGATCTGCTTCGCGGGGAG
GACTGCTGGGCGGCCCCAACCCCACGTCTCGGGACGACGGCGGAGCGACC
CCGGTCAGGGGGGATGGCGGTCGGCGAGGAGGCGACCCGGGCGCTCGGTG
GAAGTGGACGCTGGTGGACATGTCGGGGTACGTGGTGGACGTGAGGCGGC
AGAGGGTGGTGCAAGCCGTATGGCACCCGGCGAGCGATAGCTGTGTGACG
CTGCTTACGGTTGGGAGGGAAGACGGCGGCGGTGGCGGGGCGTTCGTGAT
GCTGCACGTCCCTGGGCGCGAGCGGCCGGAGCAGATGGCAATGTATACCA
CCCCGGTGGCTCGCCGGACGCCGTCCGCAGCAGCTACACACATGCAGGCC
GTGCTAAGCAGCGCGTCCTTGCACCCACCTCCTGGTGCCAGCCTCGACGC
CGTGGCCTCCCCAGCCACCCTCGGCGGCGGCGGCGGCGGCGCGAGCGGCT
TGGCTCCCGATCTCATGGCCGTGAGCGAAAAGCTCGATCTTGTCGTTCTG
TGCGCCGGCAATACGATACGCGCGGTCAACCTCGCCGAGCCATCCGACGG
TGGTAGCTACAGCAGCAGCAACAACAACAACAACGGCAGCAGGAACAGCG
GAGGAACAGCTGCACAGCGGCAGCAGCAGCAGCACCAACACGACCCCTTC
CGTGAAGTATCTTTCGCGGCAGACTGCGCTCCCAGGCCCGGGGACGACAC
CATCCCCAGCGACTCCATCCCCGCCAAGACGCCCATAAAGGGGCTGGAGT
TTTCCCCCTCCGGCCACAGCCTGCTGGTCTGGGGCGAGAGCTACGTCGCG
GTTGCCCGCCTTCCGCGATCTGCTTCGCGGGGAGGACTGCTGGGCGGCCC
CAACCCCACGTCTCGGGACGACGGCGGAGCGACCCCGGTCAGGGGGGATG
GCGGTCGGCGAGGAGGCGACCCGGGCGCTCGGTGGAAGTGGACGCTGGTG
GACATGTCGGGGTACGTGGTGGACGTGAGGCGGCAGAGGGTGGTGCAAGC
CGTATGGCACCCGGCGAGCGATAGCTGTGTGACGCTGCTTACGGTTGGGA
GGGAAGACGGCGGCGGTGGCGGGGCGTTCGTGATGCTGCACGTCCCTGGG
CGCGAGCGGCCGGAGCAGGTGGTACAAATCCCCGACGGACCGAGCGCATC
GCCGCCGGTCGCCATCGCCCACGGGCGCAGCGCGGGGTGGCAGCGCTACG
CCATTTGGATCGCTAGGAGGGACGGATCGGTGGCTGCCCTGTGCCCAGTC
GTTCCAGAAAACGCCAAGATCGACTCGGAAGAACTGGTGGTACAAATCCC
CGACGGACCGAGCGCATCGCCGCCGGTCGCCATCGCCCACGGGCGCAGCG
CGGGGTGGCAGCGCTACGCCATTTGGATCGCTAGGAGGGACGGATCGGTG
GCTGCCCTGTGCCCAGTCGTTCCAGAAAACGCCAAGATCGACTCGGAAGA
ACTGCTGGATTTGTGGTCGGTGACGGCGGACACATTGGTCGCCGCGAGGT
GGGAACGTCACTCCGGCAACGCGGTGCAGAATCAGCTGGATTTGTGGTCG
GTGACGGCGGACACATTGGTCGCCGCGAGGTGGGAACGTCACTCCGGCAA
CGCGGTGCAGAATCAGAGCGCCTTGGACGAAGAGATAGCACGCCTGGAGC
AGCAGCAGGCGTGGCTGAGGGACACGTTCGGCAACGTCTTTAGCGCCTTG
GACGAAGAGATAGCACGCCTGGAGCAGCAGCAGGCGTGGCTGAGGGACAC
GTTCGGCAACGTCTTT
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