mRNA_M-pyrifera_M_contig99096.22800.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99096.22800.1
Unique NamemRNA_M-pyrifera_M_contig99096.22800.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99096.22800.1 vs. uniprot
Match: A0A0X3PS14_SCHSO (Abhydrolase domain-containing protein 8 (Fragment) n=2 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PS14_SCHSO)

HSP 1 Score: 57.0 bits (136), Expect = 2.730e-6
Identity = 51/172 (29.65%), Postives = 80/172 (46.51%), Query Frame = 1 
Query:   79 GCAMVAYDALGCGEAKKPAEPDG---CCRGEEVGEMGLYAE-EEMAKDCLAVFEEFV----LPYRRKWPRGR---------ILIVGHSFGTVLALRL--SRTVEVDGLVLLGCSRDIPAGVRHPILSAPEMIMECLRPLLDQGFVQGAFGNEVDPAVLAYFRSIAVVNPMHV 537
            G + +  + L CGE+   A  +    CCR  +   +      EE  KD  AVF+++V    L  + +    R         +++VGHS+GT LA+RL  SR+  VD LVL+     IP      +LS P M +    P +  GF++ AFG    P  + ++   +   P+ V
Sbjct:   99 GNSPLLANYLFCGESSLLANENSVVVCCRCPKTQPLRQQCHFEEHVKDVQAVFDKYVATQILTLKVEETNVRETLELEDFHVIVVGHSYGTSLAVRLAESRSQLVDRLVLISGGAPIPLKPEPGLLSLPSMCLALCTPCIRWGFLRLAFGK---PRPIEHYPESSTSKPVTV 267
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99096.22800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0X3PS14_SCHSO2.730e-629.65Abhydrolase domain-containing protein 8 (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99096contigM-pyrifera_M_contig99096:95..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score87.8
Seed ortholog evalue5.9e-15
Seed eggNOG ortholog1005395.CSV86_26572
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsCOG2267@1,COG2267@2
COG Functional cat.I
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.8934455-CDS-M-pyrifera_M_contig99096:94..6611622816907.8934455-CDS-M-pyrifera_M_contig99096:94..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99096 95..661 -
1692278248.7985194-CDS-M-pyrifera_M_contig99096:94..6611692278248.7985194-CDS-M-pyrifera_M_contig99096:94..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99096 95..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99096.22800.1prot_M-pyrifera_M_contig99096.22800.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99096 95..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99096.22800.1

>prot_M-pyrifera_M_contig99096.22800.1 ID=prot_M-pyrifera_M_contig99096.22800.1|Name=mRNA_M-pyrifera_M_contig99096.22800.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
DGVVVFCVHGSLGTWRHFEPIWGKIGGCAMVAYDALGCGEAKKPAEPDGC
CRGEEVGEMGLYAEEEMAKDCLAVFEEFVLPYRRKWPRGRILIVGHSFGT
VLALRLSRTVEVDGLVLLGCSRDIPAGVRHPILSAPEMIMECLRPLLDQG
FVQGAFGNEVDPAVLAYFRSIAVVNPMHVVRPFYRDMLW
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mRNA from alignment at M-pyrifera_M_contig99096:95..661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99096.22800.1 ID=mRNA_M-pyrifera_M_contig99096.22800.1|Name=mRNA_M-pyrifera_M_contig99096.22800.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig99096:95..661- (Macrocystis pyrifera P11B4 male)
GATGGAGTGGTGGTCTTCTGTGTGCATGGTTCTCTAGGCACGTGGCGTCA
TTTTGAGCCGATTTGGGGCAAGATAGGAGGTTGTGCAATGGTGGCGTACG
ATGCGCTGGGTTGTGGGGAGGCAAAGAAGCCAGCAGAACCTGATGGGTGT
TGTAGGGGAGAGGAGGTGGGTGAGATGGGTCTGTATGCAGAGGAAGAGAT
GGCAAAGGATTGTTTGGCTGTGTTTGAGGAGTTTGTGTTGCCTTATCGGC
GGAAATGGCCCCGTGGGCGGATTTTGATTGTTGGACATTCGTTTGGTACA
GTGTTGGCATTGCGATTAAGTCGTACTGTGGAGGTGGATGGGTTGGTTTT
GTTAGGTTGTAGTCGAGATATCCCTGCAGGAGTACGCCATCCCATCTTAA
GTGCTCCTGAGATGATAATGGAGTGCTTGAGGCCTCTTCTGGATCAAGGG
TTTGTGCAGGGCGCATTTGGAAACGAAGTAGACCCCGCAGTGTTGGCCTA
TTTTCGTTCCATTGCTGTTGTAAACCCGATGCATGTGGTGAGACCTTTCT
ATAGAGATATGCTATGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99096:95..661-

>mRNA_M-pyrifera_M_contig99096.22800.1 ID=mRNA_M-pyrifera_M_contig99096.22800.1|Name=mRNA_M-pyrifera_M_contig99096.22800.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig99096:95..661- (Macrocystis pyrifera P11B4 male)
GATGGAGTGGTGGTCTTCTGTGTGCATGGTTCTCTAGGCACGTGGCGTCA
TTTTGAGCCGATTTGGGGCAAGATAGGAGGTTGTGCAATGGTGGCGTACG
ATGCGCTGGGTTGTGGGGAGGCAAAGAAGCCAGCAGAACCTGATGGGTGT
TGTAGGGGAGAGGAGGTGGGTGAGATGGGTCTGTATGCAGAGGAAGAGAT
GGCAAAGGATTGTTTGGCTGTGTTTGAGGAGTTTGTGTTGCCTTATCGGC
GGAAATGGCCCCGTGGGCGGATTTTGATTGTTGGACATTCGTTTGGTACA
GTGTTGGCATTGCGATTAAGTCGTACTGTGGAGGTGGATGGGTTGGTTTT
GTTAGGTTGTAGTCGAGATATCCCTGCAGGAGTACGCCATCCCATCTTAA
GTGCTCCTGAGATGATAATGGAGTGCTTGAGGCCTCTTCTGGATCAAGGG
TTTGTGCAGGGCGCATTTGGAAACGAAGTAGACCCCGCAGTGTTGGCCTA
TTTTCGTTCCATTGCTGTTGTAAACCCGATGCATGTGGTGAGACCTTTCT
ATAGAGATATGCTATGGGATGGAGTGGTGGTCTTCTGTGTGCATGGTTCT
CTAGGCACGTGGCGTCATTTTGAGCCGATTTGGGGCAAGATAGGAGGTTG
TGCAATGGTGGCGTACGATGCGCTGGGTTGTGGGGAGGCAAAGAAGCCAG
CAGAACCTGATGGGTGTTGTAGGGGAGAGGAGGTGGGTGAGATGGGTCTG
TATGCAGAGGAAGAGATGGCAAAGGATTGTTTGGCTGTGTTTGAGGAGTT
TGTGTTGCCTTATCGGCGGAAATGGCCCCGTGGGCGGATTTTGATTGTTG
GACATTCGTTTGGTACAGTGTTGGCATTGCGATTAAGTCGTACTGTGGAG
GTGGATGGGTTGGTTTTGTTAGGTTGTAGTCGAGATATCCCTGCAGGAGT
ACGCCATCCCATCTTAAGTGCTCCTGAGATGATAATGGAGTGCTTGAGGC
CTCTTCTGGATCAAGGGTTTGTGCAGGGCGCATTTGGAAACGAAGTAGAC
CCCGCAGTGTTGGCCTATTTTCGTTCCATTGCTGTTGTAAACCCGATGCA
TGTGGTGAGACCTTTCTATAGAGATATGCTATGG
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